MELO3C004406 (gene) Melon (DHL92) v4

Overview
NameMELO3C004406
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Locationchr05: 26988399 .. 26988716 (+)
RNA-Seq ExpressionMELO3C004406
SyntenyMELO3C004406
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCTCTCTTGTGAAGACGGTTGCTTTTCTTTTCATTTTTCTTTCCATTTTCGACGTCTCGGTTGGACGGTGGCTTCCGGGGTCAAGGGTTCCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCATGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGACGGTGCTGCCAGTGTTCATGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGGTTTGCAGCGGCTTCTATGGTTAATCAAACACAGAAGCAAGATTCTTCTTTGAGCTCTTGA

mRNA sequence

ATGGCTTTCTCTCTTGTGAAGACGGTTGCTTTTCTTTTCATTTTTCTTTCCATTTTCGACGTCTCGGTTGGACGGTGGCTTCCGGGGTCAAGGGTTCCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCATGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGACGGTGCTGCCAGTGTTCATGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGGTTTGCAGCGGCTTCTATGGTTAATCAAACACAGAAGCAAGATTCTTCTTTGAGCTCTTGA

Coding sequence (CDS)

ATGGCTTTCTCTCTTGTGAAGACGGTTGCTTTTCTTTTCATTTTTCTTTCCATTTTCGACGTCTCGGTTGGACGGTGGCTTCCGGGGTCAAGGGTTCCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCATGTTCCTTTATTCCGGGGTTTAGTCGGGGCCGGTGTACGTTGAGCGAGGTGGACGACGGTGCTGCCAGTGTTCATGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGGTTTGCAGCGGCTTCTATGGTTAATCAAACACAGAAGCAAGATTCTTCTTTGAGCTCTTGA

Protein sequence

MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS
Homology
BLAST of MELO3C004406 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 60
           MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 60

Query: 61  TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 106
           TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS
Sbjct: 61  TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of MELO3C004406 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-39
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 106
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of MELO3C004406 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 2.5e-28
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 25  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNA 84
           RWLP  RVP+A+LRG VPSSSRNPCSFIPGFSRGRCTLSE DDGAA+VHGGSSA  GLNA
Sbjct: 11  RWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHGGSSALSGLNA 70

Query: 85  DGFAAASMVNQTQKQDSSL 104
           DGFAAASM N+TQK+D SL
Sbjct: 71  DGFAAASMANKTQKKDPSL 89

BLAST of MELO3C004406 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = 0

Query: 1   MAFSLVKT--VAFLFIFLSIFDVSVGRWLPGSR---VPIAVLRGPVPSSSRNPCSFIPGF 60
           M FS++KT   AF+FI L IF VS  R L G R   V   +LRG VP S RNPCSFIPG 
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRPVSDRMLRGLVPPSGRNPCSFIPGL 60

Query: 61  SRGRCTLSEVDD--GAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSL 104
            RGRCTLSEV+D  G     GGSSAFPG+N DGF+AA+MVN TQKQD SL
Sbjct: 61  GRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

BLAST of MELO3C004406 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-08
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 0

Query: 25  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGGSSAFPGLNA 84
           +WL  + +  ++ RGPVP S  NPC+FIPG +RGRCTLSE+D         ++AFP +  
Sbjct: 41  QWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAPAAAFPDIVV 100

Query: 85  DGFAAA---SMVNQTQKQDSS 103
           D  A     S  N+TQKQDSS
Sbjct: 101 DFGAVTAGNSGANETQKQDSS 121

BLAST of MELO3C004406 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.1e-49
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 60
           MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGRWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRC 60

Query: 61  TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 106
           TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS
Sbjct: 61  TLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of MELO3C004406 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 6.9e-40
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 106
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of MELO3C004406 vs. ExPASy TrEMBL
Match: A0A5B6Z868 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 32  VPIAVL-RGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAAS--VHGGSSAFPGLNADGFA 91
           +PI  L RGPVPSS  NPC++IPG   GRCTL+E +   A   V     AFP    + FA
Sbjct: 43  LPIQSLQRGPVPSSGSNPCTYIPGRGTGRCTLAENEMNFAGELVAHAPPAFPDFMVN-FA 102

Query: 92  AASMVNQTQKQDS 102
           AAS  N TQK+D+
Sbjct: 103 AASKANDTQKKDT 114

BLAST of MELO3C004406 vs. ExPASy TrEMBL
Match: A0A6A3B4G4 (Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110321pilonHSYRG00407 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-05
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 38  RGPVPSSSRNPCSFIPGFSRGRCTLSEVD----DGAASVHGGSSAFPGLNADGFAAASMV 97
           RGPVP S+ NPC+ IPG SRGRCTL+E++    DG A+ H    AFP       +A++ +
Sbjct: 53  RGPVPPSAGNPCTNIPGRSRGRCTLTEMNTVGGDGVAAYHAAPPAFPEFVVKFASASAGI 112

Query: 98  NQTQKQ 100
           N T K+
Sbjct: 113 NGTDKK 118

BLAST of MELO3C004406 vs. ExPASy TrEMBL
Match: A0A5B6Z7Q1 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.2e-05
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 25  RWLPGSRVPIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDDGAASVHGG-----SSAF 84
           +WL       ++ RGPVPSS  NPC++IPG   GRCTL+E +   A  H        +AF
Sbjct: 72  QWLKKGLHIQSLPRGPVPSSGSNPCTYIPGRGTGRCTLAENEMNFAGGHDNVAPAPPAAF 131

Query: 85  PGLNADGFAAASMVNQTQKQDSS 103
           P      FAAAS  N T+K+D+S
Sbjct: 132 PDFMVK-FAAASKDNDTRKKDTS 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063581.11.7e-48100.00hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KGN60782.11.4e-3982.88hypothetical protein Csa_019261 [Cucumis sativus][more]
KAG6599331.12.5e-2883.54hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586324.16.0e-2262.73hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.14.9e-0846.91uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VCY28.1e-49100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJ846.9e-4082.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5B6Z8683.2e-0550.68Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_009662 PE=4 SV=1[more]
A0A6A3B4G44.2e-0546.97Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 OS=Hibiscus sy... [more]
A0A5B6Z7Q14.2e-0543.37Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_009663... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 8..99
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 8..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004406.1MELO3C004406.1mRNA