MELO3C004151.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C004151.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 25159136 .. 25159615 (-)
RNA-Seq ExpressionMELO3C004151.jh1
SyntenyMELO3C004151.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACACCCAAAATAATTTAATAACCCCTCTCTCTTCAAATCTTCCAACACTCAAAACTTTTTCCTTTCTCTCTTTGCTGTTGCCCTAGCCATGGCTTCATCAGCCAACAACAAAAGACAAAAGCGCCCGAAGTCGACCTCGTGTTGCTTCTCGATCTTCGGTTTGTTCAAGTCTCGAGATGGCGGAAAGAGGTGGGATGATGCAATGACGATGGACGATACACGAAAGGTGTGGCCAAGTGATGGCGACAAAGGTCGACACTGGGTCGCTGAGCCTGGCATTGATAGAAAAGCTAAAGCTTATATCGAAAAGATTCATCACCAAATCCGCTCCTCCGAACCCCAATGACAACTTCACTCCAAACTTAATTTGGATTATTAGTTCTTTCTATCATTATACATACATATATCATTACCTTATATGTATATGTATATAGATATATATAGTTTATATATGCTTTTAAGTGTGTATTATCGTATA

mRNA sequence

AAACACCCAAAATAATTTAATAACCCCTCTCTCTTCAAATCTTCCAACACTCAAAACTTTTTCCTTTCTCTCTTTGCTGTTGCCCTAGCCATGGCTTCATCAGCCAACAACAAAAGACAAAAGCGCCCGAAGTCGACCTCGTGTTGCTTCTCGATCTTCGGTTTGTTCAAGTCTCGAGATGGCGGAAAGAGGTGGGATGATGCAATGACGATGGACGATACACGAAAGGTGTGGCCAAGTGATGGCGACAAAGGTCGACACTGGGTCGCTGAGCCTGGCATTGATAGAAAAGCTAAAGCTTATATCGAAAAGATTCATCACCAAATCCGCTCCTCCGAACCCCAATGACAACTTCACTCCAAACTTAATTTGGATTATTAGTTCTTTCTATCATTATACATACATATATCATTACCTTATATGTATATGTATATAGATATATATAGTTTATATATGCTTTTAAGTGTGTATTATCGTATA

Coding sequence (CDS)

ATGGCTTCATCAGCCAACAACAAAAGACAAAAGCGCCCGAAGTCGACCTCGTGTTGCTTCTCGATCTTCGGTTTGTTCAAGTCTCGAGATGGCGGAAAGAGGTGGGATGATGCAATGACGATGGACGATACACGAAAGGTGTGGCCAAGTGATGGCGACAAAGGTCGACACTGGGTCGCTGAGCCTGGCATTGATAGAAAAGCTAAAGCTTATATCGAAAAGATTCATCACCAAATCCGCTCCTCCGAACCCCAATGA

Protein sequence

MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIEKIHHQIRSSEPQ
Homology
BLAST of MELO3C004151.jh1 vs. NCBI nr
Match: KAA0056089.1 (hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ96428.1 hypothetical protein E5676_scaffold546G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 2.50e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60
          MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85
          EPGIDRKAKAYIEKIHHQIRSSEPQ
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

BLAST of MELO3C004151.jh1 vs. NCBI nr
Match: KAG6599163.1 (hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123 bits (308), Expect = 1.54e-34
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDD-AMTMDDTRKVWPSDGDKGRHWV 60
          MASS  N  +++PKS SCCFSI  LFKSR   KRWDD A+ M+DTRKVWPSD DKGRHWV
Sbjct: 1  MASS--NDERRKPKSPSCCFSISTLFKSRARRKRWDDDAIAMEDTRKVWPSDDDKGRHWV 60

Query: 61 AEPGIDRKAKAYIEKIHHQIRSS 82
          AEPGIDRKAKAYI++IH+QIR S
Sbjct: 61 AEPGIDRKAKAYIDRIHYQIRYS 81

BLAST of MELO3C004151.jh1 vs. NCBI nr
Match: KAG6586063.1 (hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (286), Expect = 3.19e-31
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 4  SANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEPG 63
          S NNKRQK PKS SC FSIF LF+SRD  KR D+  T+DD RKVWPSD D+ R+WVAEPG
Sbjct: 3  STNNKRQK-PKSPSCFFSIFSLFRSRDSRKRRDE--TIDDMRKVWPSDEDRDRYWVAEPG 62

Query: 64 IDRKAKAYIEKIHHQIRSS 82
          IDRKAKAYI+KIH QIRSS
Sbjct: 63 IDRKAKAYIDKIHTQIRSS 78

BLAST of MELO3C004151.jh1 vs. NCBI nr
Match: XP_021898970.1 (uncharacterized protein LOC110815469 [Carica papaya])

HSP 1 Score: 84.7 bits (208), Expect = 3.11e-19
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 12 RPKSTSCCFSIFGLFKSRDGGKRWDDAMT-MDDTRKVWPSDGDKGRHWVAEPGIDRKAKA 71
          R K +S  FSIFGLFKSR   +R  D  T +DDTRKVWPSD DK R+WVAEPGIDRKA A
Sbjct: 5  RQKKSSSSFSIFGLFKSRRSHRRGGDDQTFVDDTRKVWPSDEDK-RNWVAEPGIDRKASA 64

Query: 72 YIEKIH 76
          +I K H
Sbjct: 65 FIAKFH 69

BLAST of MELO3C004151.jh1 vs. NCBI nr
Match: ESR41577.1 (hypothetical protein CICLE_v10013222mg [Citrus clementina])

HSP 1 Score: 75.9 bits (185), Expect = 9.00e-16
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 5  ANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDT----RKVWPSDGDKGRHWVA 64
          A NK++K        FS+  +FKSR   +RW+D    DD     RK+WPSD DKG +WVA
Sbjct: 2  AGNKQKKSS------FSLLNMFKSRRTNRRWEDPW--DDVGSTPRKIWPSDEDKGAYWVA 61

Query: 65 EPGIDRKAKAYIEKIHHQIRSSE 83
          EPGIDRKA A+I K H + R SE
Sbjct: 62 EPGIDRKASAFITKFH-EARISE 75

BLAST of MELO3C004151.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BDY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00610 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.21e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60
          MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85
          EPGIDRKAKAYIEKIHHQIRSSEPQ
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

BLAST of MELO3C004151.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LJ24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 7.92e-55
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 0

Query: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60
          MASSANNKRQKR KSTSCCFSIF LFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85
          EPGIDRKAKAYIEKIHHQIRSS+ Q
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSQTQ 85

BLAST of MELO3C004151.jh1 vs. ExPASy TrEMBL
Match: V4SLM0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.36e-16
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 5  ANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDT----RKVWPSDGDKGRHWVA 64
          A NK++K        FS+  +FKSR   +RW+D    DD     RK+WPSD DKG +WVA
Sbjct: 2  AGNKQKKSS------FSLLNMFKSRRTNRRWEDPW--DDVGSTPRKIWPSDEDKGAYWVA 61

Query: 65 EPGIDRKAKAYIEKIHHQIRSSE 83
          EPGIDRKA A+I K H + R SE
Sbjct: 62 EPGIDRKASAFITKFH-EARISE 75

BLAST of MELO3C004151.jh1 vs. ExPASy TrEMBL
Match: A0A2H5NTQ0 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_073840 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.36e-16
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 5  ANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDT----RKVWPSDGDKGRHWVA 64
          A NK++K        FS+  +FKSR   +RW+D    DD     RK+WPSD DKG +WVA
Sbjct: 2  AGNKQKKSS------FSLLNMFKSRRTNRRWEDPW--DDVGSTPRKIWPSDEDKGAYWVA 61

Query: 65 EPGIDRKAKAYIEKIHHQIRSSE 83
          EPGIDRKA A+I K H + R SE
Sbjct: 62 EPGIDRKASAFIAKFH-EARISE 75

BLAST of MELO3C004151.jh1 vs. ExPASy TrEMBL
Match: A0A067E306 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.18e-16
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 5  ANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDT----RKVWPSDGDKGRHWVA 64
          A NK++K        FS+  +FKSR   +RW+D    DD     RK+WPSD DKG +WVA
Sbjct: 2  AGNKQKKSS------FSLLNMFKSRRTNRRWEDPW--DDVGSAPRKIWPSDEDKGAYWVA 61

Query: 65 EPGIDRKAKAYIEKIH 76
          EPGIDRKA A+I K H
Sbjct: 62 EPGIDRKASAFIAKFH 69

BLAST of MELO3C004151.jh1 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 35 WDDAMTMDDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIEKIH-HQIRSSEPQ 86
          WDD +    TRK W SD DK R+WVAEPGIDRKA A+I K H  ++  SE Q
Sbjct: 17 WDDVIY---TRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQ 64

BLAST of MELO3C004151.jh1 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-08
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 11 KRPKSTSCCFSIFGLFKSR-----DGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEPGID 70
          K    +S  FS+F  FK+R     +    WDD      TRK   SD DK R+WVAEPGID
Sbjct: 4  KNRSHSSKRFSLFSFFKTRRSHRVEADGSWDD---FGYTRKAMASDEDK-RYWVAEPGID 63

Query: 71 RKAKAYIEKIH-HQIRSSEPQ 86
          RKA A+I K H  ++  SE Q
Sbjct: 64 RKASAFIAKFHATRVSESERQ 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056089.12.50e-58100.00hypothetical protein E6C27_scaffold323G00470 [Cucumis melo var. makuwa] >TYJ9642... [more]
KAG6599163.11.54e-3473.49hypothetical protein SDJN03_08941, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586063.13.19e-3174.68hypothetical protein SDJN03_18796, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021898970.13.11e-1966.67uncharacterized protein LOC110815469 [Carica papaya][more]
ESR41577.19.00e-1650.60hypothetical protein CICLE_v10013222mg [Citrus clementina][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BDY21.21e-58100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJ247.92e-5595.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034820 PE=4 SV=1[more]
V4SLM04.36e-1650.60Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013222mg PE=4 ... [more]
A0A2H5NTQ04.36e-1650.60Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_073840 PE=4 SV=1[more]
A0A067E3066.18e-1651.32Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040544mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G26620.11.9e-0857.69unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G05858.12.5e-0845.68unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 5..81
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 5..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004151.jh1.t1MELO3C004151.jh1.t1mRNA