MELO3C003728.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C003728.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	LYR motif-containing protein 2
Location	chr04: 3513303 .. 3513983 (+)
RNA-Seq Expression	MELO3C003728.jh1
Synteny	MELO3C003728.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGGCTACTCAATATCAAAATCGGTCTTCCGTCGTTGAATCCTCAAAGAAATCGGAACCGAACGACAGAAATGATTATACCTCCGATTGAATCAAGCAGGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGGTAATTTCCTACATTCTCGAAGAAATTTACATTGTGCCCTAGTTTTTTTTTTTTTTTATTAGTTCATACAACTCTTCAAAGAATTATTTCGATAATAAATCCTAATCTGCCTATGATTTCTGCACTGAACTGTTTGAATTTGTGATTATGAATGATTGGTTTTGGCATAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCACCTGTTGATGGTCGAGGTAAAGCTTTGTTTAATGGGATTTTATGATGACTTTGTGTTGTGGTTGTGGAAATTTCATGAATTGGATTTGATGATACTGGAACAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAA

mRNA sequence

ATGCCAGGCTACTCAATATCAAAATCGGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAA

Coding sequence (CDS)

ATGCCAGGCTACTCAATATCAAAATCGGGAATTCGCTTCACTTTAATCTGCACCATCAGTGTTATCCTCTTCATTTTGATCATTAAGGAAAGAGAAATCGCGATGGTCTTCTCCCATGATTTACGTGAATTTATTCTTCGAGCAAGAGTGTTGAAACTGTATAGACAGGGTTTAAGAACAGCTCGGAAAGCACCTGTTGATGGTCGAGATGAATTGAGGCATATGATGAGAGAAGAAATGGAGAAGAACAGAAAGTGTAATGATAGACAGAAAATAAGATTTTTGTTGAGCGAAGGAATAGAGAGATTGAAGCAATTAGATGAGATGTTGGATATGCAAGGCCATTAA

Protein sequence

MPGYSISKSGIRFTLICTISVILFILIIKEREIAMVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEGIERLKQLDEMLDMQGH

Homology

[Close]

BLAST of MELO3C003728.jh1 vs. NCBI nr
Match: KAA0063314.1 (LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 3.63e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLKQLDEMLDMQGH
Sbjct: 61  LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. NCBI nr
Match: XP_004136367.1 (LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-containing protein 2 [Cucumis sativus] >KAE8651352.1 hypothetical protein Csa_000719 [Cucumis sativus])

HSP 1 Score: 154 bits (390), Expect = 1.48e-46
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLK+LDEMLDMQGH
Sbjct: 61  LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. NCBI nr
Match: XP_008466455.1 (PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >TYK31461.1 LYR motif-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (388), Expect = 2.98e-46
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLKQLDEMLDMQGH
Sbjct: 61  LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. NCBI nr
Match: XP_038877724.1 (uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877725.1 uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877726.1 uncharacterized protein LOC120069952 [Benincasa hispida])

HSP 1 Score: 124 bits (311), Expect = 1.76e-34
Identity = 64/82 (78.05%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 34  AMVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIR 93
           AM  S DL++FILRARVLKLYRQ LRTARKAPV  R+EL+H MR+EME NR CN+RQKIR
Sbjct: 2   AMALSLDLQDFILRARVLKLYRQALRTARKAPVHAREELKHTMRQEMENNRNCNERQKIR 61

Query: 94  FLLSEGIERLKQLDEMLDMQGH 115
           +L+SEGIERLK+LDEMLDMQGH
Sbjct: 62  YLVSEGIERLKRLDEMLDMQGH 83

[Close]

BLAST of MELO3C003728.jh1 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124 bits (310), Expect = 2.36e-34
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1   MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLK+LDEMLDMQGH
Sbjct: 61  LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy Swiss-Prot
Match: Q5RES3 (LYR motif-containing protein 2 OS=Pongo abelii OX=9601 GN=LYRM2 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.9e-04
Identity = 26/71 (36.62%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 41  LREFILRARVLKLYRQGLRTARKAPVDG-RDELRHMMREEMEKNRKCNDRQKIRFLLSEG 100
           L++F+ R +VL LYR+ L+T R+ P D  R  L+   REE ++N+   +   IR ++++G
Sbjct: 13  LKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFKRNKSATEEDTIRMMITQG 72

Query: 101 IERLKQLDEML 111
             +LK+L++ L
Sbjct: 73  NMQLKELEKTL 83

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy Swiss-Prot
Match: Q9NU23 (LYR motif-containing protein 2 OS=Homo sapiens OX=9606 GN=LYRM2 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.4e-04
Identity = 26/71 (36.62%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 41  LREFILRARVLKLYRQGLRTARKAPVDG-RDELRHMMREEMEKNRKCNDRQKIRFLLSEG 100
           L++F+ R +VL LYR+ L+T R+ P D  R  L+   REE  +N+   +   IR ++++G
Sbjct: 13  LKQFVRRQQVLLLYRRILQTIRQVPNDSDRKYLKDWAREEFRRNKSATEEDTIRMMITQG 72

Query: 101 IERLKQLDEML 111
             +LK+L++ L
Sbjct: 73  NMQLKELEKTL 83

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V7X8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001390 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.76e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLKQLDEMLDMQGH
Sbjct: 61  LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CRB8 (LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.44e-46
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLKQLDEMLDMQGH
Sbjct: 61  LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy TrEMBL
Match: A0A5D3E7B8 (LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007760 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.44e-46
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MVFSHDLREFILRARVLKLYRQGLR ARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF
Sbjct: 1   MVFSHDLREFILRARVLKLYRQGLRIARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLKQLDEMLDMQGH
Sbjct: 61  LLSEGIERLKQLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 2.31e-34
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQK+RF
Sbjct: 1   MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEGIERLK+LDEMLDMQGH
Sbjct: 61  LLSEGIERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IFA5 (uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 9.38e-34
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 35  MVFSHDLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRF 94
           MV + DL+EFILRARVLKLYRQ LRT RKAPV  R+ELRH +R+EME NR C+DRQKIRF
Sbjct: 1   MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 95  LLSEGIERLKQLDEMLDMQGH 115
           LLSEG ERLK+LDEMLDMQGH
Sbjct: 61  LLSEGRERLKRLDEMLDMQGH 81

[Close]

BLAST of MELO3C003728.jh1 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 107.8 bits (268), Expect = 5.7e-24
Identity = 54/76 (71.05%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 40  DLREFILRARVLKLYRQGLRTARKAPVDGRDELRHMMREEMEKNRKCNDRQKIRFLLSEG 99
           DL+ FILRARVLKLYRQ L+ A +APV  R EL+  +R+EMEKNR CND+QKIR+L+SEG
Sbjct: 5   DLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYLISEG 64

Query: 100 IERLKQLDEMLDMQGH 116
           +ER+K LDEMLDMQGH
Sbjct: 65  LERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:

BLAST of MELO3C003728.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063314.1	3.63e-47	100.00	LYR motif-containing protein 2 [Cucumis melo var. makuwa]	[more]
XP_004136367.1	1.48e-46	98.77	LYR motif-containing protein 2 [Cucumis sativus] >XP_011652458.1 LYR motif-conta...	[more]
XP_008466455.1	2.98e-46	98.77	PREDICTED: LYR motif-containing protein 2 [Cucumis melo] >XP_008466456.1 PREDICT...	[more]
XP_038877724.1	1.76e-34	78.05	uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877725.1 unchara...	[more]
XP_023535371.1	2.36e-34	79.01	uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372....	[more]

BLAST of MELO3C003728.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RES3	4.9e-04	36.62	LYR motif-containing protein 2 OS=Pongo abelii OX=9601 GN=LYRM2 PE=3 SV=1	[more]
Q9NU23	6.4e-04	36.62	LYR motif-containing protein 2 OS=Homo sapiens OX=9606 GN=LYRM2 PE=1 SV=1	[more]

BLAST of MELO3C003728.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7X8	1.76e-47	100.00	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3CRB8	1.44e-46	98.77	LYR motif-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103503854 PE=4 SV=1	[more]
A0A5D3E7B8	1.44e-46	98.77	LYR motif-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1F8N3	2.31e-34	79.01	uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]
A0A6J1IFA5	9.38e-34	79.01	uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418...	[more]

BLAST of MELO3C003728.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76065.1	5.7e-24	71.05	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..71 e-value: 2.2E-16 score: 59.6
None	No IPR available	PANTHER	PTHR13675:SF0	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003728.jh1.t1	MELO3C003728.jh1.t1	mRNA
MELO3C003728.jh1.t2	MELO3C003728.jh1.t2	mRNA