MELO3C003216 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003216
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	transcription termination/antitermination protein NusG
Location	chr08: 31822892 .. 31825722 (+)
RNA-Seq Expression	MELO3C003216
Synteny	MELO3C003216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCAACCAAACGACAAATGGGAGTTTCAATAACGACCACTCATCGGCGTTTATCGTTGCCGGCGACTCCACAGCCTACCCAGTAATTGGAAACTTGTTTCCGCAAGCACAATGGCCTATGGGCTTCTGATTTGGAGCCCAATTTCCCTTGCTCTACCTCTTTACCTGCACTTTCCTTCTCTCTCTCTTCTTCCAGACGTACCCAATTATCAATATCCGCCTCCGTCGAAACCCCCGCCGCCGCCGCTGATGATGTTCAGCAGCTGTCGGCAAGGGATCGGAGGAAGCTGAGGAACGAGAGAAGAGAGATTAAAACCACCACCAATTGGAGGGAAGAAGTAGAAGAGAGGCTCTGCAGGAAGCCCAAGAAGGAATTTGCCACTTGGACTGAGAAGCTCAACCTTGATTACCTCGCTAAATTGGGTCCTCAATGGTGGGTTATGCGTGTTGCTCGTGTTCGAGGCCAAGAAATTGTCGAACGCCTTGCTCGTTCTCTTGCTAGGAACTACCCTGACCTCGATTTTAAGGTGAAATTTCTTCATTCCACTGTTTTGAGTCTGGGTTTGTGGCACAAATTGTATGGATTCTGTTGTGTTGCTTTCGAAATTCATTAACAGAACCCAGTATATGAAAATCTACTGAGTTCCATTGTTTGGGAACTGGAGGGAATGCTTAAATGTTTCTGTAAACATAAATGTATATCTATATTTCATTAGCTTGATTATCTTACAATGTAGTATTTAGATTGGAGAAGAAAGAATTTGAAACAACAGCTAAAAGATTAAATAATGAGGTGGTTTTTTTTTTCAATTTTATATAAGATGCCAAAGAAACAAAGGTTATCTAAAAAGGAATGAAGAAATGGGATTTATTTTTTTAGTTGCTACAAATGGTAGAGACGATAATGTATATCAACATCTCAAGTTCTTCGGTTGGATTGCAGATATATTACCCGTCGGTTAAGGAGAAGAGGAAATTAAAGAATGGTACTTACACCGTTAAACCGAAAGCTGTTTTTCCTGGATCTGTATTTATAAGGTGTGTCATGAACAAGGAGATTCATGACTTCATTAGAGAGTGTGATGGAGTTGGAGGCTTTGTTGGTGCGAAGGTCGGAAACACGTGAGTCTTTATTGTTTTCTTCTTTGTAAAATCAGTTGAGCAATTATTTGTTTTCTGGGAACACTCTACTTGAAATTACTTGAGACTCCCGACAGGGAATGAGGGAACTGTATTGGCCCTTTGAGATTATGTAATTTGTATTTCTTGTAGTCTATAGATTCTGGAGTCTAGGAGGTTATGGCACTTAACTGATTCATAACTTGATCTGGATTTCAAAATTAGGAATAATTTTGGATTCAAATTTCAGATTTTCATACTAAGATTGACGGTAGCTTTCATCCGAAATTTTAGATAAAGAAAGATGTATATTTCTCTATGTCAATTATGTGTTCTCAGTCCGTCTGTTGTTCTGATATAGTTTTGGCAATATACAGTAAACGACAGATAAATAAACCGAAGCCAGTATCCGAAGCTGACATGGAAGCAATCTTCAAAGAGGCAAAGGAAGAGCAAGAAAGACACGACCAGGCTTTCCTAGAGAAAGAGCAAGAGGAAGCTCCAAACTCTAGCGCACTCAAAACTGACTTAGATACAAATGGTACTACTGCTACGAAGCACAAAGGAAGAGGCAAAAAAGCTGTTAATACTTTGTCGCCAGGGTCAACAGTTCGAGTGGCATCAGGGACTTTTGCAGAATTTGAAGGCTCTCTTAAGAAGCTGAACCGTAAAAGTGGAAAGGTTTGCTGTTTTCTTTTAGATGAAGAGTTTGCTATAAAGAGAATAATTAGAAGAAAGTTGTGTCCTTGAGACCAGAGGGCTTGTTAGAAATCTGTTAACCATAATTGATTTCCTTCATGCAGGTAACTGTGGGATTCACACTATTTGGGAAGGAAACCCTTGTAGATCTTGACATTGGTGATATTATAGTAGAGACAAAATGAATGAATGTACTTTCTCAGTCATGGTAAGTAAAGTAATCACAAGACCCATTTATTTGAGGTTTCTTTCTTATATTTTGATGCAAAATGGTATAATCAGTCAAAACCTATACCTATTTCATGTAAGTACAAGTGGAAAACAGAGAAGCCATATAAACCATTAGCCTTAGTCAATTCATAATCATCACAAGAACTTGCTAGGATCTTGTTTTGGTCTTTCAAATCATCCAACAAACTGTTGAAATCGTTAATAATAGGCCTTTATTTGTAATGAATCTTTTCCAAATCACAATAGATGCAGATTTAGTAATCATGTCTGCAAGATTTTGGCAAAAGATATCATGGTTTTGTTACTTCATAACGCTTCGTACTCAATCTTTGTAGGAGTTGTGGATTTAAAGAAACGGAAGATTTTTCTGAGAATATTGTTTCAAGATTTGAGTTGTTGGAAACGCTAATCGGAGCGTCTTTGATAGCTGGACACTTCACTTTACTCTGTCACTGTTTTGCAGTAAAGTGTGGAAGAAATTCTCGGAGTTGGAGGATAAGCAAGCAGCTCCAGCTCTCAGCTCTCAAAGCACATCCATGAACCAAAGAACATGAAAGTACTGTTGCTTGAATTGCCAAACAGCTCACGTTGATGAACATGTCCACAAATCAGCTTTGCTTCTTTGAAATTACTCTGCATTTGGAGATTCTTATTGGAAATCAAATAGAATCTTGAAGGAATTGGCAGCCAAATGTATTCTTGTTAGACTTTTGAGAAAATCAAACTAGGAAATATTATGATGAAATCATACCTGAGTAGCACTTGTAAATTCAAATATTTCT

mRNA sequence

CATCAACCAAACGACAAATGGGAGTTTCAATAACGACCACTCATCGGCGTTTATCGTTGCCGGCGACTCCACAGCCTACCCAGTAATTGGAAACTTGTTTCCGCAAGCACAATGGCCTATGGGCTTCTGATTTGGAGCCCAATTTCCCTTGCTCTACCTCTTTACCTGCACTTTCCTTCTCTCTCTCTTCTTCCAGACGTACCCAATTATCAATATCCGCCTCCGTCGAAACCCCCGCCGCCGCCGCTGATGATGTTCAGCAGCTGTCGGCAAGGGATCGGAGGAAGCTGAGGAACGAGAGAAGAGAGATTAAAACCACCACCAATTGGAGGGAAGAAGTAGAAGAGAGGCTCTGCAGGAAGCCCAAGAAGGAATTTGCCACTTGGACTGAGAAGCTCAACCTTGATTACCTCGCTAAATTGGGTCCTCAATGGTGGGTTATGCGTGTTGCTCGTGTTCGAGGCCAAGAAATTGTCGAACGCCTTGCTCGTTCTCTTGCTAGGAACTACCCTGACCTCGATTTTAAGATATATTACCCGTCGGTTAAGGAGAAGAGGAAATTAAAGAATGGTACTTACACCGTTAAACCGAAAGCTGTTTTTCCTGGATCTGTATTTATAAGGTGTGTCATGAACAAGGAGATTCATGACTTCATTAGAGAGTGTGATGGAGTTGGAGGCTTTGTTGGTGCGAAGGTCGGAAACACTAAACGACAGATAAATAAACCGAAGCCAGTATCCGAAGCTGACATGGAAGCAATCTTCAAAGAGGCAAAGGAAGAGCAAGAAAGACACGACCAGGCTTTCCTAGAGAAAGAGCAAGAGGAAGCTCCAAACTCTAGCGCACTCAAAACTGACTTAGATACAAATGGTACTACTGCTACGAAGCACAAAGGAAGAGGCAAAAAAGCTGTTAATACTTTGTCGCCAGGGTCAACAGTTCGAGTGGCATCAGGGACTTTTGCAGAATTTGAAGGCTCTCTTAAGAAGCTGAACCGTAAAAGTGGAAAGGTAACTGTGGGATTCACACTATTTGGGAAGGAAACCCTTGTAGATCTTGACATTGGTGATATTATAGTAGAGACAAAATGAATGAATGTACTTTCTCAGTCATGGAGTTGTGGATTTAAAGAAACGGAAGATTTTTCTGAGAATATTGTTTCAAGATTTGAGTTGTTGGAAACGCTAATCGGAGCGTCTTTGATAGCTGGACACTTCACTTTACTCTGTCACTGTTTTGCAGTAAAGTGTGGAAGAAATTCTCGGAGTTGGAGGATAAGCAAGCAGCTCCAGCTCTCAGCTCTCAAAGCACATCCATGAACCAAAGAACATGAAAGTACTGTTGCTTGAATTGCCAAACAGCTCACGTTGATGAACATGTCCACAAATCAGCTTTGCTTCTTTGAAATTACTCTGCATTTGGAGATTCTTATTGGAAATCAAATAGAATCTTGAAGGAATTGGCAGCCAAATGTATTCTTGTTAGACTTTTGAGAAAATCAAACTAGGAAATATTATGATGAAATCATACCTGAGTAGCACTTGTAAATTCAAATATTTCT

Coding sequence (CDS)

ATGCGTGTTGCTCGTGTTCGAGGCCAAGAAATTGTCGAACGCCTTGCTCGTTCTCTTGCTAGGAACTACCCTGACCTCGATTTTAAGATATATTACCCGTCGGTTAAGGAGAAGAGGAAATTAAAGAATGGTACTTACACCGTTAAACCGAAAGCTGTTTTTCCTGGATCTGTATTTATAAGGTGTGTCATGAACAAGGAGATTCATGACTTCATTAGAGAGTGTGATGGAGTTGGAGGCTTTGTTGGTGCGAAGGTCGGAAACACTAAACGACAGATAAATAAACCGAAGCCAGTATCCGAAGCTGACATGGAAGCAATCTTCAAAGAGGCAAAGGAAGAGCAAGAAAGACACGACCAGGCTTTCCTAGAGAAAGAGCAAGAGGAAGCTCCAAACTCTAGCGCACTCAAAACTGACTTAGATACAAATGGTACTACTGCTACGAAGCACAAAGGAAGAGGCAAAAAAGCTGTTAATACTTTGTCGCCAGGGTCAACAGTTCGAGTGGCATCAGGGACTTTTGCAGAATTTGAAGGCTCTCTTAAGAAGCTGAACCGTAAAAGTGGAAAGGTAACTGTGGGATTCACACTATTTGGGAAGGAAACCCTTGTAGATCTTGACATTGGTGATATTATAGTAGAGACAAAATGA

Protein sequence

MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFIRCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQAFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGSLKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK

Homology

[Close]

BLAST of MELO3C003216 vs. NCBI nr
Match: XP_008448915.1 (PREDICTED: transcription termination/antitermination protein NusG [Cucumis melo] >XP_008448924.1 PREDICTED: transcription termination/antitermination protein NusG [Cucumis melo])

HSP 1 Score: 420.6 bits (1080), Expect = 8.0e-114
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI
Sbjct: 111 MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 170

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ
Sbjct: 171 RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 230

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 231 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 290

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK
Sbjct: 291 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 326

[Close]

BLAST of MELO3C003216 vs. NCBI nr
Match: XP_004147896.1 (uncharacterized protein LOC101211195 [Cucumis sativus] >KGN54344.1 hypothetical protein Csa_018004 [Cucumis sativus])

HSP 1 Score: 408.7 bits (1049), Expect = 3.2e-110
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVR QEIVERLAR LARNYPDLDFKIYYPSVKEKRKLKNGTYTV PKAVFPGSVFI
Sbjct: 111 MRVARVRSQEIVERLARCLARNYPDLDFKIYYPSVKEKRKLKNGTYTVTPKAVFPGSVFI 170

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAK+EQERHDQ
Sbjct: 171 RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKDEQERHDQ 230

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQEEAPN+SALKTDLDTNGTTATKHKGR KKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 231 AFLEKEQEEAPNTSALKTDLDTNGTTATKHKGRPKKAVNTLSPGSTVRVASGTFAEFEGS 290

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK
Sbjct: 291 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 326

[Close]

BLAST of MELO3C003216 vs. NCBI nr
Match: XP_038880828.1 (transcription termination/antitermination protein NusG isoform X1 [Benincasa hispida])

HSP 1 Score: 406.8 bits (1044), Expect = 1.2e-109
Identity = 208/216 (96.30%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSV+EKRKLKNGTYTVKPKA+FPGSVFI
Sbjct: 110 MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVQEKRKLKNGTYTVKPKALFPGSVFI 169

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RC+MNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ
Sbjct: 170 RCIMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 229

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQ+ APNSSAL+TDLDTNGTTATK KGR KKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 230 AFLEKEQDRAPNSSALETDLDTNGTTATKQKGRPKKAVNTLSPGSTVRVASGTFAEFEGS 289

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK
Sbjct: 290 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 325

[Close]

BLAST of MELO3C003216 vs. NCBI nr
Match: KAA0045071.1 (transcription termination/antitermination protein NusG [Cucumis melo var. makuwa] >TYJ96256.1 transcription termination/antitermination protein NusG [Cucumis melo var. makuwa])

HSP 1 Score: 405.6 bits (1041), Expect = 2.7e-109
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI
Sbjct: 104 MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 163

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ
Sbjct: 164 RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 223

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 224 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 283

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDI 209
           LKKLNRKSGKVTVGFTLFGKETLVDLDI
Sbjct: 284 LKKLNRKSGKVTVGFTLFGKETLVDLDI 311

[Close]

BLAST of MELO3C003216 vs. NCBI nr
Match: XP_023518856.1 (uncharacterized protein LOC111782252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 1.4e-105
Identity = 199/216 (92.13%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRV+RVRGQEIVERLARSLARNYPDLDFKIYYPSV EKRKLKNG+YTVKPKAVFPGSVFI
Sbjct: 107 MRVSRVRGQEIVERLARSLARNYPDLDFKIYYPSVHEKRKLKNGSYTVKPKAVFPGSVFI 166

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RC+MNKE+HDFIRECDGVGGFVGAKVGNTKRQINKPKPVS+ DMEAIFKEAKE+QERHDQ
Sbjct: 167 RCIMNKEMHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSQDDMEAIFKEAKEQQERHDQ 226

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKE+E+APN S L+TDLDTNGTTATKHKGR KKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 227 AFLEKEKEQAPNPSVLETDLDTNGTTATKHKGRPKKAVNTLSPGSTVRVASGTFAEFEGS 286

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKK+NRKSGKVTVGFTLFGKETLV+LDIGDI VETK
Sbjct: 287 LKKVNRKSGKVTVGFTLFGKETLVELDIGDIKVETK 322

[Close]

BLAST of MELO3C003216 vs. ExPASy Swiss-Prot
Match: Q06795 (Transcription termination/antitermination protein NusG OS=Bacillus subtilis (strain 168) OX=224308 GN=nusG PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 52/187 (27.81%), Postives = 77/187 (41.18%), Query Frame = 0


Query: 25  DLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFIRCVMNKEIHDFIRECDGVGGFVGA 84
           D  F++  P  +E+  +KNG   V  K VFPG V +  VM  +    +R   GV GFVG+
Sbjct: 33  DKIFRVVVPE-EEETDIKNGKKKVVKKKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGS 92

Query: 85  KVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQAFLEKEQEEAPNSSALKTDLDTNG 144
                    +KP P+   + E I K    ++ + D  F  KE                  
Sbjct: 93  AGSG-----SKPTPLLPGEAETILKRMGMDERKTDIDFELKE------------------ 152

Query: 145 TTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGSLKKLNRKSGKVTVGFTLFGKETLV 204
                                TV+V  G FA F GS+++++    KV V   +FG+ET V
Sbjct: 153 ---------------------TVKVIDGPFANFTGSIEEIDYDKSKVKVFVNMFGRETPV 174

Query: 205 DLDIGDI 212
           +L+   I
Sbjct: 213 ELEFTQI 174

[Close]

BLAST of MELO3C003216 vs. ExPASy Swiss-Prot
Match: P35872 (Transcription termination/antitermination protein NusG OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=nusG PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 51/193 (26.42%), Postives = 81/193 (41.97%), Query Frame = 0


Query: 25  DLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFIRCVMN-----KEIHDFIRECDGVG 84
           D  F++  P+ +     + G   V  K +FPG +FI+  +       E  + +R   G+ 
Sbjct: 33  DKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEAWEVVRGTPGIT 92

Query: 85  GFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQAFLEKEQEEAPNSSALKTD 144
           GFVGA +        +P P+S  ++  I                                
Sbjct: 93  GFVGAGM--------RPVPLSPDEVRHI-------------------------------- 152

Query: 145 LDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGSLKKLNRKSGKVTVGFTLFG 204
           L+ +G    K      KA      G  VRV SG FA+F G++ ++N + GKV V  T+FG
Sbjct: 153 LEVSGLLGKK---EAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFG 182

Query: 205 KETLVDLDIGDII 213
           +ET V+LD   ++
Sbjct: 213 RETPVELDFSQVV 182

[Close]

BLAST of MELO3C003216 vs. ExPASy Swiss-Prot
Match: Q9HWC4 (Transcription termination/antitermination protein NusG OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=nusG PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 38/176 (21.59%), Postives = 71/176 (40.34%), Query Frame = 0


Query: 36  KEKRKLKNGTYTVKPKAVFPGSVFIRCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINK 95
           +E  +++NG      +  FPG V ++  MN+     +++   V GF+G          +K
Sbjct: 43  EEVVEMRNGQKRKSERKFFPGYVLVQMEMNEGTWHLVKDTPRVMGFIGGTA-------DK 102

Query: 96  PKPVSEADMEAIFKEAKEEQERHDQAFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGK 155
           P P+++ + +AI +   +                                      G   
Sbjct: 103 PAPITDREADAILRRVAD-------------------------------------SGDKP 162

Query: 156 KAVNTLSPGSTVRVASGTFAEFEGSLKKLNRKSGKVTVGFTLFGKETLVDLDIGDI 212
           K      PG TVRV  G FA+F G ++++N +  ++ V   +FG+ T V+L+   +
Sbjct: 163 KPKTLFEPGETVRVIDGPFADFNGVVEEVNYEKSRIQVAVLIFGRSTPVELEFSQV 174

[Close]

BLAST of MELO3C003216 vs. ExPASy Swiss-Prot
Match: P29397 (Transcription termination/antitermination protein NusG OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=nusG PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-07
Identity = 44/166 (26.51%), Postives = 76/166 (45.78%), Query Frame = 0


Query: 46  YTVKPKAVFPGSVFIRCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADME 105
           Y  K + +FPG VF+  +MN E ++F+R    V GFV +          +P PV + +M 
Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSG--------GQPVPVKDREMR 283

Query: 106 AIFKEAKEEQERHDQAFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGS 165
            I + A  E         E E+++ P    +K +L                       G 
Sbjct: 284 PILRLAGLE---------EYEEKKKP----VKVELG-------------------FKVGD 343

Query: 166 TVRVASGTFAEFEGSLKKLNRKSGKVTVGFTLFGKETLVDLDIGDI 212
            V++ SG F +F G +K+++ +  ++ V  T+FG+ET V L + ++
Sbjct: 344 MVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEV 349

[Close]

BLAST of MELO3C003216 vs. ExPASy Swiss-Prot
Match: P65591 (Transcription termination/antitermination protein NusG OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=nusG PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-07
Identity = 45/199 (22.61%), Postives = 81/199 (40.70%), Query Frame = 0


Query: 13  ERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFIRCVMNKEIHDFI 72
           ER+AR    +Y    F      V++   ++NG  T+  +  +PG V +   M  +    +
Sbjct: 24  ERIAREEMGDY----FGQILVPVEKVVDIRNGRKTISERKSYPGYVLVEMEMTDDSWHLV 83

Query: 73  RECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQAFLEKEQEEAPN 132
           +    V GF+G +        N+P P+S+ + E I ++         Q  +EK + +   
Sbjct: 84  KSTPRVSGFIGGRA-------NRPTPISQREAEIILQQV--------QTGIEKPKPKV-- 143

Query: 133 SSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGSLKKLNRKSGKVT 192
                                          G  VRV  G FA+F G ++++N +  K+ 
Sbjct: 144 ---------------------------EFEVGQQVRVNEGPFADFNGVVEEVNYERNKLR 174

Query: 193 VGFTLFGKETLVDLDIGDI 212
           V   +FG+ET V+L+   +
Sbjct: 204 VSVQIFGRETPVELEFSQV 174

[Close]

BLAST of MELO3C003216 vs. ExPASy TrEMBL
Match: A0A1S3BKU2 (transcription termination/antitermination protein NusG OS=Cucumis melo OX=3656 GN=LOC103490936 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI
Sbjct: 111 MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 170

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ
Sbjct: 171 RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 230

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 231 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 290

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK
Sbjct: 291 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 326

[Close]

BLAST of MELO3C003216 vs. ExPASy TrEMBL
Match: A0A0A0KZV1 (NGN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G307370 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.5e-110
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVR QEIVERLAR LARNYPDLDFKIYYPSVKEKRKLKNGTYTV PKAVFPGSVFI
Sbjct: 111 MRVARVRSQEIVERLARCLARNYPDLDFKIYYPSVKEKRKLKNGTYTVTPKAVFPGSVFI 170

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAK+EQERHDQ
Sbjct: 171 RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKDEQERHDQ 230

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQEEAPN+SALKTDLDTNGTTATKHKGR KKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 231 AFLEKEQEEAPNTSALKTDLDTNGTTATKHKGRPKKAVNTLSPGSTVRVASGTFAEFEGS 290

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK
Sbjct: 291 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 326

[Close]

BLAST of MELO3C003216 vs. ExPASy TrEMBL
Match: A0A5D3BBK0 (Transcription termination/antitermination protein NusG OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00460 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI
Sbjct: 104 MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 163

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ
Sbjct: 164 RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 223

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS
Sbjct: 224 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 283

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDI 209
           LKKLNRKSGKVTVGFTLFGKETLVDLDI
Sbjct: 284 LKKLNRKSGKVTVGFTLFGKETLVDLDI 311

[Close]

BLAST of MELO3C003216 vs. ExPASy TrEMBL
Match: A0A6J1EV13 (uncharacterized protein LOC111438223 OS=Cucurbita moschata OX=3662 GN=LOC111438223 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.7e-106
Identity = 199/216 (92.13%), Postives = 210/216 (97.22%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRV+RVRGQEIVERLARSLARNYPDLDFKIYYPSV EKRKLKNG+YTVKPKAVFPGSVFI
Sbjct: 107 MRVSRVRGQEIVERLARSLARNYPDLDFKIYYPSVHEKRKLKNGSYTVKPKAVFPGSVFI 166

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RC+MNKE+HDFIRECDGVGGFVGAKVGNTKRQINKPKPVS+ DMEAIFKEAKEEQERHDQ
Sbjct: 167 RCIMNKEMHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSQDDMEAIFKEAKEEQERHDQ 226

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
           AFLEKE+E+APN S L+TDLDTNGTTATKHKGR KKAVNTLSPGSTVRV+SGTFAEFEGS
Sbjct: 227 AFLEKEKEQAPNPSVLETDLDTNGTTATKHKGRPKKAVNTLSPGSTVRVSSGTFAEFEGS 286

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVETK 217
           LKK+NRKS KVTVGFTLFGKETLV+LDIGDIIVETK
Sbjct: 287 LKKVNRKSKKVTVGFTLFGKETLVELDIGDIIVETK 322

[Close]

BLAST of MELO3C003216 vs. ExPASy TrEMBL
Match: A0A6J1DDH4 (uncharacterized protein LOC111019492 OS=Momordica charantia OX=3673 GN=LOC111019492 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.5e-105
Identity = 201/215 (93.49%), Postives = 208/215 (96.74%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSV+EKR+LKNGTY VKP+AVFPGSVFI
Sbjct: 109 MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVQEKRRLKNGTYMVKPRAVFPGSVFI 168

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RC+MNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ
Sbjct: 169 RCIMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 228

Query: 121 AFLEKEQEEAPNSSALKTDLDTNGTTATKHKGRGKKAVNTLSPGSTVRVASGTFAEFEGS 180
            FLEKEQE+APNS+  KTDLDTNGTTATK KGR KKAVN LSPGSTVRVASGTFAEFEGS
Sbjct: 229 DFLEKEQEKAPNSTIHKTDLDTNGTTATKPKGRLKKAVNALSPGSTVRVASGTFAEFEGS 288

Query: 181 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVET 216
           LKKLNRKSGKVTVGFTLFGKETLVDLDIGDI+VET
Sbjct: 289 LKKLNRKSGKVTVGFTLFGKETLVDLDIGDIVVET 323

[Close]

BLAST of MELO3C003216 vs. TAIR 10
Match: AT3G09210.1 (plastid transcriptionally active 13 )

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-64
Identity = 131/234 (55.98%), Postives = 172/234 (73.50%), Query Frame = 0


Query: 1   MRVARVRGQEIVERLARSLARNYPDLDFKIYYPSVKEKRKLKNGTYTVKPKAVFPGSVFI 60
           +RV+R+RG E  + LAR+LAR +P+++F +Y PSV+ KRKLKNG+ +VKPK VFPG +FI
Sbjct: 101 VRVSRLRGHETAQILARALARQFPEMEFTVYAPSVQVKRKLKNGSISVKPKPVFPGCIFI 160

Query: 61  RCVMNKEIHDFIRECDGVGGFVGAKVGNTKRQINKPKPVSEADMEAIFKEAKEEQERHDQ 120
           RC++NKEIHD IR+ DGVGGF+G+KVGNTKRQINKP+PV ++D+EAIFK+AKE QE+ D 
Sbjct: 161 RCILNKEIHDSIRDVDGVGGFIGSKVGNTKRQINKPRPVDDSDLEAIFKQAKEAQEKADS 220

Query: 121 AFLE--KEQEEA-----------PNSSALKTDLDT-------NGTTATKHKGRGKKAVNT 180
            F E  + +EEA            NS  ++T  ++         T AT+ K + KK    
Sbjct: 221 EFEEADRAEEEASILASQELLALSNSDVIETVAESKPKRAPRKATLATETKAKKKK---- 280

Query: 181 LSPGSTVRVASGTFAEFEGSLKKLNRKSGKVTVGFTLFGKETLVDLDIGDIIVE 215
           L+ GSTVRV SGTFAEF G+LKKLNRK+ K TVGFTLFGKETLV++DI +++ E
Sbjct: 281 LAAGSTVRVLSGTFAEFVGNLKKLNRKTAKATVGFTLFGKETLVEIDINELVPE 330

The following BLAST results are available for this feature:

BLAST of MELO3C003216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448915.1	8.0e-114	100.00	PREDICTED: transcription termination/antitermination protein NusG [Cucumis melo]...	[more]
XP_004147896.1	3.2e-110	97.22	uncharacterized protein LOC101211195 [Cucumis sativus] >KGN54344.1 hypothetical ...	[more]
XP_038880828.1	1.2e-109	96.30	transcription termination/antitermination protein NusG isoform X1 [Benincasa his...	[more]
KAA0045071.1	2.7e-109	100.00	transcription termination/antitermination protein NusG [Cucumis melo var. makuwa...	[more]
XP_023518856.1	1.4e-105	92.13	uncharacterized protein LOC111782252 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C003216 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06795	4.3e-09	27.81	Transcription termination/antitermination protein NusG OS=Bacillus subtilis (str...	[more]
P35872	2.1e-08	26.42	Transcription termination/antitermination protein NusG OS=Thermus thermophilus (...	[more]
Q9HWC4	2.3e-07	21.59	Transcription termination/antitermination protein NusG OS=Pseudomonas aeruginosa...	[more]
P29397	2.3e-07	26.51	Transcription termination/antitermination protein NusG OS=Thermotoga maritima (s...	[more]
P65591	4.0e-07	22.61	Transcription termination/antitermination protein NusG OS=Neisseria meningitidis...	[more]

BLAST of MELO3C003216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKU2	3.9e-114	100.00	transcription termination/antitermination protein NusG OS=Cucumis melo OX=3656 G...	[more]
A0A0A0KZV1	1.5e-110	97.22	NGN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G307370 PE=4 SV...	[more]
A0A5D3BBK0	1.3e-109	100.00	Transcription termination/antitermination protein NusG OS=Cucumis melo var. maku...	[more]
A0A6J1EV13	8.7e-106	92.13	uncharacterized protein LOC111438223 OS=Cucurbita moschata OX=3662 GN=LOC1114382...	[more]
A0A6J1DDH4	1.5e-105	93.49	uncharacterized protein LOC111019492 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of MELO3C003216 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09210.1	2.8e-64	55.98	plastid transcriptionally active 13	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 108..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..147
None	No IPR available	PANTHER	PTHR30265:SF4	TRANSCRIPTION ANTITERMINATION PROTEIN RFAH	coord: 2..213
None	No IPR available	CDD	cd06091	KOW_NusG	coord: 161..211 e-value: 5.39487E-12 score: 56.6968
None	No IPR available	CDD	cd09890	NGN_plant	coord: 2..108 e-value: 2.72422E-45 score: 144.803
IPR006645	NusG, N-terminal	SMART	SM00738	nusgn_4	coord: 3..111 e-value: 1.0E-12 score: 58.3
IPR006645	NusG, N-terminal	PFAM	PF02357	NusG	coord: 14..107 e-value: 6.0E-9 score: 36.3
IPR036735	NusG, N-terminal domain superfamily	GENE3D	3.30.70.940		coord: 1..113 e-value: 1.6E-16 score: 62.3
IPR036735	NusG, N-terminal domain superfamily	SUPERFAMILY	82679	N-utilization substance G protein NusG, N-terminal domain	coord: 13..113
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 159..212 e-value: 1.7E-12 score: 49.1
IPR043425	NusG-like	PANTHER	PTHR30265	RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG	coord: 2..213
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 161..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003216.1	MELO3C003216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated