MELO3C003032 (gene) Melon (DHL92) v4

Overview


Name	MELO3C003032
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cold shock protein 2-like
Location	chr09: 10331315 .. 10332499 (+)
RNA-Seq Expression	MELO3C003032
Synteny	MELO3C003032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATAAGGTTGAAAGCGGATTAAGCAGCTCATAACGGTCTGATCCCCGAATCCTTCTTTTCCCACGAATCTCTCTATCCGAGAGACATCCACTTTCGAAAACTGAATCAATACTCAAAGAAAGGGAAGGAAAAATCAATTGGCCGCCATTGGTTCCTTCTGTGAATGACATGCAGCTTATTCATCTAGATATACATTGCTGCAGCTTTTCAATTGTCCTTTCTTTCCTTTTTCTTTCTTTTACACTTTTTCCTTTTCATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCACAGAAGGGGTTTGGGTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACCTCCATTCGTTCAGAAGGATTTCGGACTCTTTTCGATGGTCAAACTGTTGAGTTTACCATCGATTATGACCAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGATAGATCTACCAGATATGGAGGAGGTCGCGGGGGTGGGAGAGGTAGAGGTGGTTCTTATGGAAGATTCGGTGGCGGCGGCCGCGGTTTTGGCAGAGGAAGATGGTACGATGGTCCAAGCGGTGGTGGTGGTCGTGGCGGTGGGGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATAGGGGTAATGGCGGTGCTCCTCCTGGCCGTAGATACGAAGGTGGTCGAGGTTATGGTGGTGGTGGGGGCGGTAGAGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGAAGAATGTTGGTCTTCCTTTAAGCGGTACACATTACAATTTTTCTGAAAATTATTTTGGTTGGCCTGTTAATTTTTTTATGCGAAATCTGGGATTTTTTAGTGTGTCAGTGACTTCAAGTCTGCAATTGAGGGCACGAGGATCTGGCGGTAATAAATCATAAGGCTTCATCTCGTCAATGTTTCTCCTTTTGGGTCTTCCATAATTTGTTGTTCATAATTAGATGATGAAACCAATTGTTTGTATATGCTATACCTTTCTGGCATTTCTAATTCATTCTTTCTTTGCTTGTTGTTTTATAGAATCATAATATGATATTTGTAATCTGTCAAAAGGTATAAGTTCATACCATTTTTTATTTCTTATATACGTTTCACTTTT

mRNA sequence

GGATAAGGTTGAAAGCGGATTAAGCAGCTCATAACGGTCTGATCCCCGAATCCTTCTTTTCCCACGAATCTCTCTATCCGAGAGACATCCACTTTCGAAAACTGAATCAATACTCAAAGAAAGGGAAGGAAAAATCAATTGGCCGCCATTGGTTCCTTCTGTGAATGACATGCAGCTTATTCATCTAGATATACATTGCTGCAGCTTTTCAATTGTCCTTTCTTTCCTTTTTCTTTCTTTTACACTTTTTCCTTTTCATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCACAGAAGGGGTTTGGGTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACCTCCATTCGTTCAGAAGGATTTCGGACTCTTTTCGATGGTCAAACTGTTGAGTTTACCATCGATTATGACCAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGATAGATCTACCAGATATGGAGGAGGTCGCGGGGGTGGGAGAGGTAGAGGTGGTTCTTATGGAAGATTCGGTGGCGGCGGCCGCGGTTTTGGCAGAGGAAGATGGTACGATGGTCCAAGCGGTGGTGGTGGTCGTGGCGGTGGGGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATAGGGGTAATGGCGGTGCTCCTCCTGGCCGTAGATACGAAGGTGGTCGAGGTTATGGTGGTGGTGGGGGCGGTAGAGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGAAGAATGTTGGTCTTCCTTTAAGCGTGTGTCAGTGACTTCAAGTCTGCAATTGAGGGCACGAGGATCTGGCGGTAATAAATCATAAGGCTTCATCTCGTCAATGTTTCTCCTTTTGGGTCTTCCATAATTTGTTGTTCATAATTAGATGATGAAACCAATTGTTTGTATATGCTATACCTTTCTGGCATTTCTAATTCATTCTTTCTTTGCTTGTTGTTTTATAGAATCATAATATGATATTTGTAATCTGTCAAAAGGTATAAGTTCATACCATTTTTTATTTCTTATATACGTTTCACTTTT

Coding sequence (CDS)

ATGGCTGAGGTGAAGAGATCGAGCGGTACTGTAAGGTGGTTTAGTGCACAGAAGGGGTTTGGGTTCATAGCTCCAGATGATGCTAGCGACGATCTTTTTGTCCACCAGACCTCCATTCGTTCAGAAGGATTTCGGACTCTTTTCGATGGTCAAACTGTTGAGTTTACCATCGATTATGACCAAGATCAACGCGCCAAGGCCGTCGACGTCACTGTAATTGATAGATCTACCAGATATGGAGGAGGTCGCGGGGGTGGGAGAGGTAGAGGTGGTTCTTATGGAAGATTCGGTGGCGGCGGCCGCGGTTTTGGCAGAGGAAGATGGTACGATGGTCCAAGCGGTGGTGGTGGTCGTGGCGGTGGGGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTATAGGGGTAATGGCGGTGCTCCTCCTGGCCGTAGATACGAAGGTGGTCGAGGTTATGGTGGTGGTGGGGGCGGTAGAGGTTGTTATAATTGTGGAGATACAGGACATTTTGCTAGGGATTGTCAAAACGAAAGCAAATGA

Protein sequence

MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNESK

Homology

[Close]

BLAST of MELO3C003032 vs. NCBI nr
Match: XP_008465791.1 (PREDICTED: cold shock protein 2-like [Cucumis melo] >XP_008465792.1 PREDICTED: cold shock protein 2-like [Cucumis melo] >KAA0047448.1 cold shock protein 2-like [Cucumis melo var. makuwa] >TYJ98642.1 cold shock protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 360.9 bits (925), Expect = 6.4e-96
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120
           QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120

Query: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180
           GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE
Sbjct: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180

Query: 181 SK 183
           SK
Sbjct: 181 SK 182

[Close]

BLAST of MELO3C003032 vs. NCBI nr
Match: XP_004140332.1 (cold shock protein 2 [Cucumis sativus] >XP_011655173.1 cold shock protein 2 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 173/182 (95.05%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAE+KRS+GTVRWFSAQKGFGFIAPDDA+DDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD
Sbjct: 1   MAELKRSTGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120
           QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRW +GPS GGGRGG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWNEGPS-GGGRGG 120

Query: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180
           GECYNCGRMGHLARDCYRGNGGAP GRRY+GGRGYGGGGGGRGCYNCGDTGH ARDCQNE
Sbjct: 121 GECYNCGRMGHLARDCYRGNGGAPSGRRYDGGRGYGGGGGGRGCYNCGDTGHLARDCQNE 180

Query: 181 SK 183
           SK
Sbjct: 181 SK 181

[Close]

BLAST of MELO3C003032 vs. NCBI nr
Match: KGN51220.2 (hypothetical protein Csa_008318 [Cucumis sativus])

HSP 1 Score: 332.8 bits (852), Expect = 1.9e-87
Identity = 169/178 (94.94%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQR 64
           +RS+GTVRWFSAQKGFGFIAPDDA+DDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQR
Sbjct: 322 RRSTGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQR 381

Query: 65  AKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGGGECY 124
           AKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRW +GPS GGGRGGGECY
Sbjct: 382 AKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWNEGPS-GGGRGGGECY 441

Query: 125 NCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNESK 183
           NCGRMGHLARDCYRGNGGAP GRRY+GGRGYGGGGGGRGCYNCGDTGH ARDCQNESK
Sbjct: 442 NCGRMGHLARDCYRGNGGAPSGRRYDGGRGYGGGGGGRGCYNCGDTGHLARDCQNESK 498

[Close]

BLAST of MELO3C003032 vs. NCBI nr
Match: XP_038906549.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 166/187 (88.77%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDAS+DLFVHQTSIRSEGFRTLFDGQ VEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASEDLFVHQTSIRSEGFRTLFDGQAVEFTIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSG-----G 120
           +DQR+KAVDVTVI RST YGGGRGGGRGRGG+YGRFGGGGRGFGRG  Y+  SG     G
Sbjct: 61  EDQRSKAVDVTVIGRSTGYGGGRGGGRGRGGAYGRFGGGGRGFGRGGRYEDSSGGFGGRG 120

Query: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFAR 180
           GGRGGGECYNCGRMGHLARDCYRGNGGAPPGR Y GGRGYGGG GG GCYNCGDTGHFAR
Sbjct: 121 GGRGGGECYNCGRMGHLARDCYRGNGGAPPGRGYGGGRGYGGGAGG-GCYNCGDTGHFAR 180

Query: 181 DCQNESK 183
           DCQNESK
Sbjct: 181 DCQNESK 186

[Close]

BLAST of MELO3C003032 vs. NCBI nr
Match: XP_022993723.1 (cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016506.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 4.2e-79
Identity = 167/196 (85.20%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA+DDLFVHQTSI+SEGFRTLFDGQ VEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGG----GGRGFGRGRW-YDGPS-- 120
           +DQRAKAVDVTV  RS+ YGGGRGG RGRGG YGRFGG    GGRGFGRG   YDGPS  
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 ---GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGYGGGGGGRGCYN 180
              GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGYGGGGGGRGCYN
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGRGCYN 180

Query: 181 CGDTGHFARDCQNESK 183
           CGDTGHFARDCQNESK
Sbjct: 181 CGDTGHFARDCQNESK 196

[Close]

BLAST of MELO3C003032 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.1e-39
Identity = 105/200 (52.50%), Postives = 124/200 (62.00%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQR 64
           +R  G+V+WF  QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L   + VEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVTVIDRST--------------RYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYD 124
            KA+DV+  D +                +GGGRGGGRG GG Y   GGGG G+G GR   
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGY---GGGGGGYG-GR--- 128

Query: 125 GPSGGGGRGGGECYNCGRMGHLARDCYRGNGG-APPGRRYEGGRGYGGGGGGRG------ 178
              GGGGRGG +CY CG  GH+ARDC  G GG    G  Y GG GYGGGGGG G      
Sbjct: 129 ---GGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGG 188

[Close]

BLAST of MELO3C003032 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.1e-37
Identity = 107/207 (51.69%), Postives = 125/207 (60.39%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQR 64
           +R+ GTV+WFS QKGFGFI PDD  +DLFVHQ+ IRSEGFR+L +G+TVEF ++   D R
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 65  AKAVDVTVID----RSTRYGGGRGGGR---GRGGSYGRFGGGGR-----------GFGRG 124
            KAVDVT  D    +  R GGG GGGR   G GG  G +GGGGR           G+G G
Sbjct: 67  TKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGG 126

Query: 125 RWYDGPS---------------GGGGRGGGE-CYNCGRMGHLARDCYRGNGGAPPGRRYE 178
             Y G S               GGGG GGG  C+ CG  GH ARDC +  GG   G R+ 
Sbjct: 127 GGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG-GGGRFG 186

[Close]

BLAST of MELO3C003032 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.7e-35
Identity = 99/183 (54.10%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRA 65
           R  GTV+WF  QKGFGFI P D  DDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRW-YDGPSGG---GGRGGG 125
           KA++V+  D      G  GGG   GG  G  GGGGRG GRG   Y G  GG   GGRGGG
Sbjct: 74  KAIEVSGPD-GAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGG 133

Query: 126 ----ECYNCGRMGHLARDCYRGNG---GAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFA 178
                C+ CG  GH+AR+C +G G   G   G RY  G G GGGGGG  CY+CG++GHFA
Sbjct: 134 GGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFA 193

[Close]

BLAST of MELO3C003032 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.5e-27
Identity = 95/209 (45.45%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRA 65
           RS G V WFS  KG+GFI PDD  ++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVTV--------IDRSTRYGGGRGGGRGR---------GGSYGR-FGGGG--RGFGR 125
           KA++VT          + S+R  GG     G          GGS G+ FGGGG  R  G 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 126 GRWY----------------DGPSGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPGRRY 179
           G  Y                 G SGGGG GG  CY+CG +GHLA+DC  G+G    G RY
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG----GNRY 189

[Close]

BLAST of MELO3C003032 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-23
Identity = 85/184 (46.20%), Postives = 97/184 (52.72%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRA 65
           RS+G V WF+A KG+GFI PDD S +LFVHQ+SI SEG+R+L  G  VEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVTVID----RSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGG---- 125
           KAV+VT       +      G G  RG GGS G +  G  G        G  GGGG    
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGS-GCYNCGELGHISKDCGIGGGGGGGERRS 129

Query: 126 RGGGECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDC 182
           RGG  CYNCG  GH ARDC     G   G            GG  GCY CGD GH ARDC
Sbjct: 130 RGGEGCYNCGDTGHFARDCTSAGNGDQRG---------ATKGGNDGCYTCGDVGHVARDC 183

[Close]

BLAST of MELO3C003032 vs. ExPASy TrEMBL
Match: A0A1S3CPN9 (cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.1e-96
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120
           QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120

Query: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180
           GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE
Sbjct: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180

Query: 181 SK 183
           SK
Sbjct: 181 SK 182

[Close]

BLAST of MELO3C003032 vs. ExPASy TrEMBL
Match: A0A5A7TX13 (Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00260 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.1e-96
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120
           QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120

Query: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180
           GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE
Sbjct: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180

Query: 181 SK 183
           SK
Sbjct: 181 SK 182

[Close]

BLAST of MELO3C003032 vs. ExPASy TrEMBL
Match: A0A0A0KRF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G374720 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.6e-90
Identity = 173/182 (95.05%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAE+KRS+GTVRWFSAQKGFGFIAPDDA+DDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD
Sbjct: 1   MAELKRSTGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGGRGG 120
           QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRW +GPS GGGRGG
Sbjct: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWNEGPS-GGGRGG 120

Query: 121 GECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDCQNE 180
           GECYNCGRMGHLARDCYRGNGGAP GRRY+GGRGYGGGGGGRGCYNCGDTGH ARDCQNE
Sbjct: 121 GECYNCGRMGHLARDCYRGNGGAPSGRRYDGGRGYGGGGGGRGCYNCGDTGHLARDCQNE 180

Query: 181 SK 183
           SK
Sbjct: 181 SK 181

[Close]

BLAST of MELO3C003032 vs. ExPASy TrEMBL
Match: A0A6J1K351 (cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 167/196 (85.20%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA+DDLFVHQTSI+SEGFRTLFDGQ VEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGG----GGRGFGRGRW-YDGPS-- 120
           +DQRAKAVDVTV  RS+ YGGGRGG RGRGG YGRFGG    GGRGFGRG   YDGPS  
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 ---GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGYGGGGGGRGCYN 180
              GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGYGGGGGGRGCYN
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGRGCYN 180

Query: 181 CGDTGHFARDCQNESK 183
           CGDTGHFARDCQNESK
Sbjct: 181 CGDTGHFARDCQNESK 196

[Close]

BLAST of MELO3C003032 vs. ExPASy TrEMBL
Match: A0A6J1FIQ9 (cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.5e-78
Identity = 167/198 (84.34%), Postives = 171/198 (86.36%), Query Frame = 0


Query: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYD 60
           MAEVKRSSGTVRWFSAQKGFGFIAPDDA+DDLFVHQTSI+SEGFRTLFDGQ VEF IDYD
Sbjct: 1   MAEVKRSSGTVRWFSAQKGFGFIAPDDATDDLFVHQTSIQSEGFRTLFDGQAVEFAIDYD 60

Query: 61  QDQRAKAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGG----GGRGFGRGRW-YDGPS-- 120
           +DQRAKAVDVTV  RS+ YGGGRGG RGRGG YGRFGG    GGRGFGRG   YDGPS  
Sbjct: 61  EDQRAKAVDVTVTGRSSGYGGGRGGARGRGGGYGRFGGEGGYGGRGFGRGGGRYDGPSGG 120

Query: 121 ---GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP----GRRYEGGRGY--GGGGGGRGC 180
              GGGGRGGGECYNCGRMGHLARDCYRGNGGAPP    GR Y GGRGY  GGGGGGRGC
Sbjct: 121 FGGGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPSRGGGRGYGGGRGYGGGGGGGGRGC 180

Query: 181 YNCGDTGHFARDCQNESK 183
           YNCGDTGHFARDCQNESK
Sbjct: 181 YNCGDTGHFARDCQNESK 198

[Close]

BLAST of MELO3C003032 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 164.5 bits (415), Expect = 8.2e-41
Identity = 105/200 (52.50%), Postives = 124/200 (62.00%), Query Frame = 0


Query: 5   KRSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQR 64
           +R  G+V+WF  QKGFGFI PDD  DDLFVHQ+SIRSEGFR+L   + VEF ++ D + R
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 65  AKAVDVTVIDRST--------------RYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYD 124
            KA+DV+  D +                +GGGRGGGRG GG Y   GGGG G+G GR   
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGY---GGGGGGYG-GR--- 128

Query: 125 GPSGGGGRGGGECYNCGRMGHLARDCYRGNGG-APPGRRYEGGRGYGGGGGGRG------ 178
              GGGGRGG +CY CG  GH+ARDC  G GG    G  Y GG GYGGGGGG G      
Sbjct: 129 ---GGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGG 188

[Close]

BLAST of MELO3C003032 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-36
Identity = 99/183 (54.10%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRA 65
           R  GTV+WF  QKGFGFI P D  DDLFVHQ+SIRSEGFR+L   ++VEF ++ D   R 
Sbjct: 14  RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 66  KAVDVTVIDRSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRW-YDGPSGG---GGRGGG 125
           KA++V+  D      G  GGG   GG  G  GGGGRG GRG   Y G  GG   GGRGGG
Sbjct: 74  KAIEVSGPD-GAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGG 133

Query: 126 ----ECYNCGRMGHLARDCYRGNG---GAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFA 178
                C+ CG  GH+AR+C +G G   G   G RY  G G GGGGGG  CY+CG++GHFA
Sbjct: 134 GGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFA 193

[Close]

BLAST of MELO3C003032 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 121.7 bits (304), Expect = 6.1e-28
Identity = 95/209 (45.45%), Postives = 115/209 (55.02%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRA 65
           RS G V WFS  KG+GFI PDD  ++LFVHQ+SI S+GFR+L  G++VE+ I    D + 
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 66  KAVDVTV--------IDRSTRYGGGRGGGRGR---------GGSYGR-FGGGG--RGFGR 125
           KA++VT          + S+R  GG     G          GGS G+ FGGGG  R  G 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 126 GRWY----------------DGPSGGGGRGGGECYNCGRMGHLARDCYRGNGGAPPGRRY 179
           G  Y                 G SGGGG GG  CY+CG +GHLA+DC  G+G    G RY
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG----GNRY 189

[Close]

BLAST of MELO3C003032 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-24
Identity = 85/184 (46.20%), Postives = 97/184 (52.72%), Query Frame = 0


Query: 6   RSSGTVRWFSAQKGFGFIAPDDASDDLFVHQTSIRSEGFRTLFDGQTVEFTIDYDQDQRA 65
           RS+G V WF+A KG+GFI PDD S +LFVHQ+SI SEG+R+L  G  VEF I    D + 
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 66  KAVDVTVID----RSTRYGGGRGGGRGRGGSYGRFGGGGRGFGRGRWYDGPSGGGG---- 125
           KAV+VT       +      G G  RG GGS G +  G  G        G  GGGG    
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGS-GCYNCGELGHISKDCGIGGGGGGGERRS 129

Query: 126 RGGGECYNCGRMGHLARDCYRGNGGAPPGRRYEGGRGYGGGGGGRGCYNCGDTGHFARDC 182
           RGG  CYNCG  GH ARDC     G   G            GG  GCY CGD GH ARDC
Sbjct: 130 RGGEGCYNCGDTGHFARDCTSAGNGDQRG---------ATKGGNDGCYTCGDVGHVARDC 183

The following BLAST results are available for this feature:

BLAST of MELO3C003032 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465791.1	6.4e-96	100.00	PREDICTED: cold shock protein 2-like [Cucumis melo] >XP_008465792.1 PREDICTED: c...	[more]
XP_004140332.1	1.2e-89	95.05	cold shock protein 2 [Cucumis sativus] >XP_011655173.1 cold shock protein 2 [Cuc...	[more]
KGN51220.2	1.9e-87	94.94	hypothetical protein Csa_008318 [Cucumis sativus]	[more]
XP_038906549.1	1.5e-81	88.77	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_022993723.1	4.2e-79	85.20	cold shock protein 2-like [Cucurbita maxima] >KAG6578982.1 Cold shock protein 1,...	[more]

BLAST of MELO3C003032 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41188	1.1e-39	52.50	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
P27484	3.1e-37	51.69	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	1.7e-35	54.10	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q94C69	8.5e-27	45.45	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	4.4e-23	46.20	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of MELO3C003032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPN9	3.1e-96	100.00	cold shock protein 2-like OS=Cucumis melo OX=3656 GN=LOC103503390 PE=4 SV=1	[more]
A0A5A7TX13	3.1e-96	100.00	Cold shock protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KRF7	5.6e-90	95.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G374720 PE=4 SV=1	[more]
A0A6J1K351	2.0e-79	85.20	cold shock protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111489638 PE=4 SV=1	[more]
A0A6J1FIQ9	6.5e-78	84.34	cold shock protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444649 PE=4 SV=...	[more]

BLAST of MELO3C003032 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38680.1	8.2e-41	52.50	glycine rich protein 2	[more]
AT2G21060.1	1.2e-36	54.10	glycine-rich protein 2B	[more]
AT2G17870.1	6.1e-28	45.45	cold shock domain protein 3	[more]
AT4G36020.1	3.1e-24	46.20	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 9..24 score: 60.88 coord: 30..39 score: 58.54 coord: 45..63 score: 35.07
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 8..72 e-value: 1.8E-22 score: 78.9
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 6..72 score: 31.084557
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 9..72 e-value: 1.36948E-22 score: 83.7822
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 163..179 e-value: 1.3E-5 score: 34.7 coord: 122..138 e-value: 2.7E-4 score: 30.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 162..178 e-value: 9.3E-8 score: 31.8 coord: 122..136 e-value: 6.2E-7 score: 29.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 164..179 score: 11.053757
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 123..136 score: 11.070239
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 8..73 e-value: 1.8E-22 score: 90.7
None	No IPR available	GENE3D	2.40.50.140		coord: 1..71 e-value: 2.5E-24 score: 87.0
None	No IPR available	GENE3D	4.10.60.10		coord: 159..182 e-value: 1.7E-6 score: 29.5 coord: 114..153 e-value: 2.1E-6 score: 29.3
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..180
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 20..39
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..73
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 104..137
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 147..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003032.1	MELO3C003032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding