MELO3C002760 (gene) Melon (DHL92) v4

Overview
NameMELO3C002760
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr12: 19794471 .. 19794955 (+)
RNA-Seq ExpressionMELO3C002760
SyntenyMELO3C002760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGTAGCAAAAATTTAACAAAGCCATAGGATGAGTTTAAGGCTCATATATCCCATCGCACAAGAAATGGCCGCCAACAACAACAACACCACCCTAACTCCTTCCGCCCAACCATCAACACCACTAACCCGATTTTCAGCGATTGTACCGCCACGCTTCAGCTGCGCTTCGAGACCCCAAATTCAAATTACTCTGTACACCATTTATGAAGAAGAAACTGAGGTCAAATTTTGCCAAGCTTCTTCTTCCTCTGTCTCCTCGGCTCTCTCTTACTTTCGTCCACTTGGATCAGTGAAATGTTCTTGATTGAAGCTTTTTAGTGTTCATACCCATCTCTCTGTTTCTTTGCCTCTAATATTATCTTACTTTTATTAACACTCTGTTTCATCTAATTTTGTTAGTTTCAATTTCTTCGCCATCGATGTGATGATTCTCCCTCCTTTGGTTTTTGGAACCTAATTTTAAATTGTTACTTATTTTTCTT

mRNA sequence

ATTGGTAGCAAAAATTTAACAAAGCCATAGGATGAGTTTAAGGCTCATATATCCCATCGCACAAGAAATGGCCGCCAACAACAACAACACCACCCTAACTCCTTCCGCCCAACCATCAACACCACTAACCCGATTTTCAGCGATTGTACCGCCACGCTTCAGCTGCGCTTCGAGACCCCAAATTCAAATTACTCTGTACACCATTTATGAAGAAGAAACTGAGGTCAAATTTTGCCAAGCTTCTTCTTCCTCTGTCTCCTCGGCTCTCTCTTACTTTCGTCCACTTGGATCAGTGAAATGTTCTTGATTGAAGCTTTTTAGTGTTCATACCCATCTCTCTGTTTCTTTGCCTCTAATATTATCTTACTTTTATTAACACTCTGTTTCATCTAATTTTGTTAGTTTCAATTTCTTCGCCATCGATGTGATGATTCTCCCTCCTTTGGTTTTTGGAACCTAATTTTAAATTGTTACTTATTTTTCTT

Coding sequence (CDS)

ATGAGTTTAAGGCTCATATATCCCATCGCACAAGAAATGGCCGCCAACAACAACAACACCACCCTAACTCCTTCCGCCCAACCATCAACACCACTAACCCGATTTTCAGCGATTGTACCGCCACGCTTCAGCTGCGCTTCGAGACCCCAAATTCAAATTACTCTGTACACCATTTATGAAGAAGAAACTGAGGTCAAATTTTGCCAAGCTTCTTCTTCCTCTGTCTCCTCGGCTCTCTCTTACTTTCGTCCACTTGGATCAGTGAAATGTTCTTGA

Protein sequence

MSLRLIYPIAQEMAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASSSSVSSALSYFRPLGSVKCS
Homology
[Close]
BLAST of MELO3C002760 vs. NCBI nr
Match: KAA0054012.1 (hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK20698.1 hypothetical protein E5676_scaffold480G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 154.8 bits (390), Expect = 3.5e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 13 MAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASS 72
          MAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASS
Sbjct: 1  MAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASS 60

Query: 73 SSVSSALSYFRPLGSVKCS 92
          SSVSSALSYFRPLGSVKCS
Sbjct: 61 SSVSSALSYFRPLGSVKCS 79

[Close]
BLAST of MELO3C002760 vs. NCBI nr
Match: KAE8653296.1 (hypothetical protein Csa_023338 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 3.8e-33
Identity = 81/91 (89.01%), Postives = 82/91 (90.11%), Query Frame = 0 

Query: 1  MSLRLIYPIAQEMAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYE 60
          MSLRLIYPIAQEM ANNN TTLTPS+QPSTPLTRFSAI PPRFSCASRP IQITLYTIYE
Sbjct: 1  MSLRLIYPIAQEM-ANNNTTTLTPSSQPSTPLTRFSAIAPPRFSCASRPHIQITLYTIYE 60

Query: 61 EETEVKFCQASSSSVSSALSYFRPLGSVKCS 92
          EETEVK CQA SSS SSALS FRPL SVKCS
Sbjct: 61 EETEVKICQAPSSSFSSALSCFRPLRSVKCS 90

[Close]
BLAST of MELO3C002760 vs. NCBI nr
Match: KAG6583881.1 (hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = 0 

Query: 1   MSLRLIYPIAQEMAANNNN-TTLTP----SAQPSTPLTRFSAIVPPRFSCASRPQIQITL 60
           MS RL+YPI+QEM  NNN+   + P    S Q S PLTRFSAI PPR    SR QIQ+TL
Sbjct: 1   MSPRLVYPISQEMPNNNNSPKPIAPNPRSSGQASPPLTRFSAIAPPRSGGISRTQIQVTL 60

Query: 61  YTIYEEETEVKFCQ----------ASSSSVSSALSYFRPLGSVKCS 92
            TIYE+E+E + C+             S  S+ALS FRPL S+KCS
Sbjct: 61  QTIYEDESEDRMCRRRRRRRHCYDRKPSFSSAALSCFRPLRSLKCS 106

[Close]
BLAST of MELO3C002760 vs. ExPASy TrEMBL
Match: A0A5D3DAX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00920 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 13 MAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASS 72
          MAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASS
Sbjct: 1  MAANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASS 60

Query: 73 SSVSSALSYFRPLGSVKCS 92
          SSVSSALSYFRPLGSVKCS
Sbjct: 61 SSVSSALSYFRPLGSVKCS 79

[Close]
BLAST of MELO3C002760 vs. ExPASy TrEMBL
Match: A0A0A0M102 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 68/77 (88.31%), Postives = 69/77 (89.61%), Query Frame = 0 

Query: 15 ANNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQASSSS 74
          ANNN TTLTPS+QPSTPLTRFSAI PPRFSCASRP IQITLYTIYEEETEVK CQA SSS
Sbjct: 2  ANNNTTTLTPSSQPSTPLTRFSAIAPPRFSCASRPHIQITLYTIYEEETEVKICQAPSSS 61

Query: 75 VSSALSYFRPLGSVKCS 92
           SSALS FRPL SVKCS
Sbjct: 62 FSSALSCFRPLRSVKCS 78

The following BLAST results are available for this feature:
BLAST of MELO3C002760 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C002760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054012.13.5e-34100.00hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK2069... [more]
KAE8653296.13.8e-3389.01hypothetical protein Csa_023338 [Cucumis sativus][more]
KAG6583881.12.6e-1351.89hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MELO3C002760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DAX81.7e-34100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0M1021.2e-2788.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1[more]
BLAST of MELO3C002760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002760.1MELO3C002760.1mRNA