MELO3C002022 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002022
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	H/ACA ribonucleoprotein complex subunit 4
Location	chr12: 25424737 .. 25427241 (+)
RNA-Seq Expression	MELO3C002022
Synteny	MELO3C002022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGAACCCCCCATGTCGAAGTTCAGCCATTTCCTCTAAAACTTCGTCTCTCAAGATTTCGGCTCTTTTTGGAGAAAACCATCTGGCAGTTCAGCCATGTCGAAGCACAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCGCCAAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAATGGCCTATTCTTCTGAAAAACTACGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCGTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCGAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTCGATCCGAAGGTTACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTAGTGAAATCGCAACAGGGTGCAGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCACCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGAGAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTACGTTAGGACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTTGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAACGATATTGGTGTTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGATTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCCACTGGTGGGGACTTTTTGGTTGCAAGTGCTTTCGCTACCGAATCCGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGACGGAGGGCGGAAGCGAAAACTAGATGAAGATACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGGTACAGCAGAAGAACCTTCTAATGAGGAGATTGTTGAGTATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACCGAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAGTCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAAGATGATCACATTCTACTTTATATTTGGGTAACTCTGATTGTATGGCCATCTATTTCAGTTTCTAGATTTTGCGAGTTCTTTTATTATGTGCTTCCTGTAGAATTTTTGTTTCAACATTTCGACTAAAAAATGTAGGCTTTTCGATTCTCCAAATCTTCCTTCCTATACCTTATTTATTTATTTCAACTTTTGCAAGCTGATGATAATGTTAGTGATGATATGCACCATAGTTTCCCAAGGTAAAATTCCCAGCTCCAATTTTGACTTGCAAGTTGATGTAAATTTAAATTACACATTCTTTTGCAGATGAAAGTTGATGCATGGTGAGCGTACTTGGTAACACCTCTAGGCTCTATTAAGACTGTAATGTTTGTTATGTGCAACAATACTCCATTAAAGAACTGATAAGTGGAAGCAGTTGATATCCAATTAACGATCTGTTGAGTATCCAAATATAAATCCAATGGCCTTGACTTCAACGAGGACATTACTCTTGGAAAGTTGGATTATCCTAAAGGTCTCCACTGTTAGGTTGGTGATCGATTCGATCACCAAAAACAAATGACTATAAAAATTGAAGCATTGTTTTCTATGTCTTTCCTAGTAGATTTGAAGACTGGATATCCATTTTTAGAAGTTTTTGAGAATGTGTTCGATACTTTTTTTCCAAAAGAATAAACATGAAATTCTTTGTATAGCCTTTCA

mRNA sequence

ACTGAACCCCCCATGTCGAAGTTCAGCCATTTCCTCTAAAACTTCGTCTCTCAAGATTTCGGCTCTTTTTGGAGAAAACCATCTGGCAGTTCAGCCATGTCGAAGCACAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCGCCAAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAATGGCCTATTCTTCTGAAAAACTACGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCGTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCGAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTCGATCCGAAGGTTACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTAGTGAAATCGCAACAGGGTGCAGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCACCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGAGAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTACGTTAGGACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTTGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAACGATATTGGTGTTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGATTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCCACTGGTGGGGACTTTTTGGTTGCAAGTGCTTTCGCTACCGAATCCGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGACGGAGGGCGGAAGCGAAAACTAGATGAAGATACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGGTACAGCAGAAGAACCTTCTAATGAGGAGATTGTTGAGTATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACCGAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAGTCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAAGATGATCACATTCTACTTTATATTTGGATGAAAGTTGATGCATGGTGAGCGTACTTGGTAACACCTCTAGGCTCTATTAAGACTGTAATGTTTGTTATGTGCAACAATACTCCATTAAAGAACTGATAAGTGGAAGCAGTTGATATCCAATTAACGATCTGTTGAGTATCCAAATATAAATCCAATGGCCTTGACTTCAACGAGGACATTACTCTTGGAAAGTTGGATTATCCTAAAGGTCTCCACTGTTAGGTTGGTGATCGATTCGATCACCAAAAACAAATGACTATAAAAATTGAAGCATTGTTTTCTATGTCTTTCCTAGTAGATTTGAAGACTGGATATCCATTTTTAGAAGTTTTTGAGAATGTGTTCGATACTTTTTTTCCAAAAGAATAAACATGAAATTCTTTGTATAGCCTTTCA

Coding sequence (CDS)

ATGTCGAAGCACAGCAGCAAGTCATCGGCTGTTAGTTCCGACGAACAGCCGCCAAAGGAAGTTGCTGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTCGACACCTCTCAATGGCCTATTCTTCTGAAAAACTACGACCGTCTTAATGTACGTACTGGTCATTACACTCCATTGCCGTCTGGTTATTTGCCTCTCAAACGGCCTCTTGCTGAGTATATCAGGTATGGCATTCTCAATCTTGATAAACCAGCGAATCCTTCTTCGCATGAAGTTGTGGCTTGGATTAAGCGGATTCTTCGGGTTGATAAAACCGGTCATAGTGGTACTCTCGATCCGAAGGTTACTGGGAACCTGATTGTGTGCATTGATCGAGCCACGCGGCTAGTGAAATCGCAACAGGGTGCAGGTAAAGAGTACGTGTGTGTTGCTCGGTTGCATTCTGCTGTGCCCGATGTTTCTAAGGTTGCTCGGGCTCTGGAGACGCTCACTGGGGCTGTGTTTCAGAGGCCACCGTTGATATCTGCTGTGAAAAGACAGCTTAGGATTAGAACTATATATGAAAGCAAGCTTCTTGAGTATGATGCTGAGAAACATTTGGTTGTGTTTTGGATTTCTTGTGAAGCGGGAACTTACGTTAGGACGTTATGCGTACACTTGGGTTTGATTCTTGGCGTTGGAGGGCATATGCAGGAGCTTAGAAGGGTGAGATCTGGGATTTTGGGTGAGAAGGATAACATGGTTACAATGCATGATGTGATGGATGCTCAATGGGTTTATGATAATTTCAAGGATGAAAGCTATCTGAGGAGGGTAATTATGCCTCTTGAGGTTGTTTTGACGAGCTATAAAAGATTGGTTGTCAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCGAAGTTGATGATTCCAGGGCTGTTGAGATTTGAAAACGATATTGGTGTTGGGGAAGAAGTTGTACTTATGACTACCAAAGGTGAAGCTATTGCTCTTGGTATTGCAGAGATGACTACTGCAGTGATGGCAACTTGTGACCATGGTGTTGTAGCGAAGATCAAAAGGGTTGTGATGGATCGAGATACTTACCCAAGAAAGTGGGGATTAGGTCCGAGGGCATCAATGAAGAAAAAACTTATTGGGGAAGGGAAGTTGGACAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGCTGAGGAATTTGGTTTTACCCACTGGTGGGGACTTTTTGGTTGCAAGTGCTTTCGCTACCGAATCCGCAACTGCTAAGCCTACTGCTGCAGAAGAGTCAGGAAAAGATGACGGAGGGCGGAAGCGAAAACTAGATGAAGATACTGAAGCTGCTCCAGCTAAGAAACTGAAGACTGAGGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAAAAGAAGAAAGACAAGGAGAAGGGTACAGCAGAAGAACCTTCTAATGAGGAGATTGTTGAGTATTCAGAGAAGAAGAAAAAGAAGAAGGACAAAGAAGCTAAAGAAGCAGGTACACCTGAGACACCGAAGTCCGAGAAGAAAAAGAAAAAGAAAGATAAGGAGTCTGGAAATGATGATTCTCAATTACCTGCTGCTGATGTTCAAAATGGTGAAGCACATGATCACGATGATGGAAGTGAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAATAAAGAAGATGCTGAAGAATAA

Protein sequence

MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE

Homology

[Close]

BLAST of MELO3C002022 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 763.8 bits (1971), Expect = 1.3e-219
Identity = 419/571 (73.38%), Postives = 472/571 (82.66%), Query Frame = 0


Query: 6   SKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYL 65
           SK       E    +  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+ 
Sbjct: 9   SKKKKQDKTENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 66  PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCID 125
           PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCID
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 128

Query: 126 RATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIR 185
           RATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIR
Sbjct: 129 RATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIR 188

Query: 186 TIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEK 245
           TIYESKLLEYDA++HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE 
Sbjct: 189 TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN 248

Query: 246 DNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMI 305
           +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMI
Sbjct: 249 NNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMI 308

Query: 306 PGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP 365
           PGLLRFENDI VG EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYP
Sbjct: 309 PGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 368

Query: 366 RKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATESATA 425
           RKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD ++A A A   A  
Sbjct: 369 RKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAA---APE 428

Query: 426 KPTAAEESGKDDGGRKRKLDED--------TEAAPAKKLKTEEVEEVGKKEKKKKKKDKE 485
           +  A  E+G+    RKRK D+         T+ +  K+++ EE EE  K  KKKKKKDKE
Sbjct: 429 EIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKE 488

Query: 486 KGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAAD 545
           +   EE  +E+     ++KKKKKDK+ +      +PKSEKKKKKK K++        A D
Sbjct: 489 EEKEEEAGSEK-----KEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTE------AAVD 548

Query: 546 VQNGEAHDHDDGSEKKK-KKKKKKNKEDAEE 568
            ++  A +  +  +KKK KKKK K+ ED EE
Sbjct: 549 AEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of MELO3C002022 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 614.8 bits (1584), Expect = 1.0e-174
Identity = 323/510 (63.33%), Postives = 396/510 (77.65%), Query Frame = 0


Query: 3   KHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPS 62
           +   K S    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNV T HYTPLPS
Sbjct: 13  RKKDKRSLPDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLNVLTTHYTPLPS 72

Query: 63  GYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIV 122
           G  PLKR +++Y+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG LIV
Sbjct: 73  GANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 132

Query: 123 CIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQL 182
           CI+RATRLVKSQQ AGKEYV + RLH+A+   +++ARA+ETLTGA+FQRPPLI+AVKRQL
Sbjct: 133 CIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQRPPLIAAVKRQL 192

Query: 183 RIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIL 242
           R+RTIYESKL+EYD E+ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRSGIL
Sbjct: 193 RVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRSGIL 252

Query: 243 GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAK 302
           GE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KDSAVNAICYGAK
Sbjct: 253 GEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKDSAVNAICYGAK 312

Query: 303 LMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRD 362
           +M+PG+LR+E+ I + +E+V++TTKGEAI L IA MTTAV++TCDHGVVAKIKRV+M+RD
Sbjct: 313 IMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVVAKIKRVIMERD 372

Query: 363 TYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATES 422
           TYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +  V     D+  +S    + 
Sbjct: 373 TYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKKEYV-----DYRESS---KKE 432

Query: 423 ATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGTAE 482
           A   P A  E  +    ++    E+   +P     T   EE+ KKEKKKKKK+K+   A 
Sbjct: 433 AAKVPQAVSEVERAPKRKRESESENEAVSPPPSPATPPPEELSKKEKKKKKKEKKAKEAA 492

Query: 483 EPSNEEIVEYSE-----KKKKKKDKEAKEA 508
           E   E++   SE     KKKKKK KE +E+
Sbjct: 493 ESGEEQVEVISESSAKKKKKKKKQKEVEES 514

[Close]

BLAST of MELO3C002022 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 600.9 bits (1548), Expect = 1.5e-170
Identity = 321/508 (63.19%), Postives = 398/508 (78.35%), Query Frame = 0


Query: 3   KHSSKSSAVSSDEQPPKEV---ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTP 62
           KH  K       E    E+    DF+IKP+S    +DTSQWP+LLKN+DRLNVRT HYTP
Sbjct: 13  KHKKKKERKPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHYTP 72

Query: 63  LPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGN 122
           +P G  PLKR + EY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG 
Sbjct: 73  IPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 132

Query: 123 LIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVK 182
           LIVCI+RATRLVKSQQ AGKEYV V RLH+A+   ++++RALETLTGA+FQRPPLI+AVK
Sbjct: 133 LIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAAVK 192

Query: 183 RQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRS 242
           RQLR+RTIYES+++EYD E+ L VFW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRS
Sbjct: 193 RQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 252

Query: 243 GILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICY 302
           G++GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+KRLV+KDSAVNAICY
Sbjct: 253 GVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAICY 312

Query: 303 GAKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVM 362
           GAK+M+PGLLR+E+ I V +EVV++TTKGEA+ + IA MTTAV++TCDHGVVAKIKRV+M
Sbjct: 313 GAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRVIM 372

Query: 363 DRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFA 422
           +RDTYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ V     D+  +S  A
Sbjct: 373 ERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYV-----DYSDSSKKA 432

Query: 423 TES-ATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEK 482
           T + AT  P    ++       KRK D D++A  A    T  V    KKEKKKKK+  + 
Sbjct: 433 TAAEATPGPGVTADAASI---VKRKRDSDSDADEATPTTTPRV----KKEKKKKKEKADG 492

Query: 483 GTAEEPSNEEIVEYSEKKKKKKDKEAKE 507
           G  EE + +   + + KKKKKK + A+E
Sbjct: 493 G--EEAAEDGDGDATRKKKKKKARAAEE 506

[Close]

BLAST of MELO3C002022 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 600.1 bits (1546), Expect = 2.6e-170
Identity = 317/508 (62.40%), Postives = 393/508 (77.36%), Query Frame = 0


Query: 3   KHSSKSSAVSSDEQPPKEV---ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTP 62
           KH  K       E    E+    +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HYTP
Sbjct: 12  KHKKKKDRKPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHYTP 71

Query: 63  LPSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGN 122
           LP G  PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVTG 
Sbjct: 72  LPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGC 131

Query: 123 LIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVK 182
           LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   ++++RALETLTGA+FQRPPLI+AVK
Sbjct: 132 LIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVK 191

Query: 183 RQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRS 242
           RQLR+RTIYESK++EYD E+ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRVRS
Sbjct: 192 RQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRVRS 251

Query: 243 GILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICY 302
           G++ EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAICY
Sbjct: 252 GVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAICY 311

Query: 303 GAKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVM 362
           GAK+M+PGLLR+E+ I V +E+V++TTKGEAI + IA MTTAV++TCDHG+VAKIKRV+M
Sbjct: 312 GAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRVIM 371

Query: 363 DRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLV--LPTGGDFLVASA 422
           +RDTYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ +    +G + LV   
Sbjct: 372 ERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLV--- 431

Query: 423 FATESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKE 482
             TE+  A   AAE         KRK D ++E        ++E   V + ++KKKKKDK+
Sbjct: 432 --TEAVQAPQLAAEAVNV----IKRKRDSESE--------SDETPTVPQLKEKKKKKDKK 491

Query: 483 KGTAEEPSNEEIVEYSEKKKKKKDKEAK 506
             T  E   E     ++  KKKK K+ K
Sbjct: 492 PKTVLESGGETGDGDNDTTKKKKKKKVK 502

[Close]

BLAST of MELO3C002022 vs. ExPASy Swiss-Prot
Match: O14007 (H/ACA ribonucleoprotein complex subunit cbf5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cbf5 PE=3 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 3.3e-170
Identity = 310/482 (64.32%), Postives = 382/482 (79.25%), Query Frame = 0


Query: 23  DFMIKPQSFT-PPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPLKRPLAEYIRYGILN 82
           DFMIKP++ +   +DT++WP+LLKN+D+L VRTGHYTP+P G  PLKRP+AEY+  G++N
Sbjct: 9   DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68

Query: 83  LDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEY 142
           LDKPANPSSHEVVAW+K+ILRV+KTGHSGTLDPKVTG LI+C DRATRLVKSQQ AGKEY
Sbjct: 69  LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128

Query: 143 VCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHL 202
           VCV RLH +V     VA A+ETLTGA+FQRPPLISAVKRQLRIR+IYESKL+E+D E++L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDNERNL 188

Query: 203 VVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVY 262
            VFW SCEAGTY+RTLCVHLGL+LGVGGHMQELRRVRSG L E D++VTMHDV+DAQW+Y
Sbjct: 189 AVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIY 248

Query: 263 DNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIGVGEEV 322
           DN +DESYLRRVI PLE +L  YKR+VVKDSAVNAICYGAKLMIPGLLR+E  I V EE+
Sbjct: 249 DNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEI 308

Query: 323 VLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLI 382
           VL+TTKGEAIA+GIA+M+T  ++TCDHGVVAK+KR +M+RD YPR+WGLGP++  KK L 
Sbjct: 309 VLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLK 368

Query: 383 GEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATESATAKPTAAEESGKDDGGRK 442
            EGKLDK+G+PNENTP +W ++ +  +  +  VA      +  A    AE +G +D  +K
Sbjct: 369 KEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVED-SKK 428

Query: 443 RKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGTAEEPSNEEIVEYSEKKKKKKD 502
           RK  E +E         ++ +E  KKE+K++KK+ +K        +E  E  EKK+KKK 
Sbjct: 429 RKSVESSE---------KDEDEAAKKEEKRRKKEAKK------EKKEKKEKKEKKEKKKK 474

Query: 503 KE 504
            E
Sbjct: 489 SE 474

[Close]

BLAST of MELO3C002022 vs. NCBI nr
Match: XP_008449192.1 (PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucumis melo])

HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 566/567 (99.82%), Postives = 566/567 (99.82%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480
           ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT
Sbjct: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480

Query: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
           AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of MELO3C002022 vs. NCBI nr
Match: XP_011650148.1 (H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus] >KAE8652522.1 hypothetical protein Csa_013456 [Cucumis sativus])

HSP 1 Score: 1056.6 bits (2731), Expect = 7.6e-305
Identity = 555/567 (97.88%), Postives = 560/567 (98.77%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVASAF +
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480
           +SATAKPTAAEESGKDDGGRKRKLDE+TEAAPAKKLKTEEVEEVGKKEKKKKKKDKEK T
Sbjct: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKDT 480

Query: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
           AEEPSNEEIVE SEKKKKKKDKEAKEA TPETPKSEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 AEEPSNEEIVENSEKKKKKKDKEAKEAATPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of MELO3C002022 vs. NCBI nr
Match: XP_038894523.1 (H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida])

HSP 1 Score: 972.6 bits (2513), Expect = 1.4e-279
Identity = 524/569 (92.09%), Postives = 536/569 (94.20%), Query Frame = 0


Query: 8   SSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYLPL 67
           SSAV SDEQP K+V DFMIKP S  PPVDTSQWPILLKNYDRLNVRTGHYTPLPSG+LPL
Sbjct: 2   SSAVGSDEQPWKDVVDFMIKPSSVAPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGFLPL 61

Query: 68  KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA 127
           KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA
Sbjct: 62  KRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRA 121

Query: 128 TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI 187
           TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI
Sbjct: 122 TRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTI 181

Query: 188 YESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN 247
           YESKLLEYD +KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN
Sbjct: 182 YESKLLEYDVDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDN 241

Query: 248 MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG 307
           MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG
Sbjct: 242 MVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPG 301

Query: 308 LLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK 367
           LLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK
Sbjct: 302 LLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRK 361

Query: 368 WGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATESATAKP 427
           WGLGPRASMKKKLIGEGKLDKHGKPNE TPQEWLRNLVLPTGGD LVAS FAT++ATAKP
Sbjct: 362 WGLGPRASMKKKLIGEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSLVASVFATDTATAKP 421

Query: 428 TAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEV----EEVGKKE--KKKKKKDKEKGTA 487
           TAAEE+GKD GGRKRKLDE+TEAAP KKLK ++     EEVGKKE  KKKKKKDKEKGTA
Sbjct: 422 TAAEETGKDGGGRKRKLDEETEAAPGKKLKADKAEDVEEEVGKKEKKKKKKKKDKEKGTA 481

Query: 488 EEPSNEEIVEYSEKKKKKKD---KEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADV 547
           EEPS+EE VE SEKKKKKKD   KEAKEAGTPET KS+KKKKKKD ESGNDDS + AADV
Sbjct: 482 EEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETEKSKKKKKKKDNESGNDDSHIHAADV 541

Query: 548 QNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           QNGEA  H DGSE KKKKKKKKNKEDAEE
Sbjct: 542 QNGEADGHVDGSE-KKKKKKKKNKEDAEE 569

[Close]

BLAST of MELO3C002022 vs. NCBI nr
Match: XP_038894282.1 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida])

HSP 1 Score: 953.7 bits (2464), Expect = 6.9e-274
Identity = 517/575 (89.91%), Postives = 532/575 (92.52%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSK+ S S AV SDEQP K+VADFMIKP S+TPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKNRSMSPAVGSDEQPQKDVADFMIKPNSYTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSG+LPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGFLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYD +KHLVVFWISCEAGTYVRTLCV LGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDVDKHLVVFWISCEAGTYVRTLCVXLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLG-PRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFA 420
           RDTYPRKWGLG P    +K L+ EGKLDKHGKPN NTPQEWLRNLVLPTGGD LVAS  A
Sbjct: 361 RDTYPRKWGLGHPGHQXRKNLLREGKLDKHGKPNANTPQEWLRNLVLPTGGDSLVASILA 420

Query: 421 TESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEV----EEVGKKE-KKKKKK 480
           T++ATAKPT AEE+GKDDGGRKRKLDE+TEAAP KKLK E+     EEVGKKE KKKKKK
Sbjct: 421 TDTATAKPTTAEETGKDDGGRKRKLDEETEAAPGKKLKAEKAEEVEEEVGKKEKKKKKKK 480

Query: 481 DKEKGTAEEPSNEEIVEYSEKKKKKKD---KEAKEAGTPETPKSEKKKKKKDKESGNDDS 540
           DKEKGTAEEPS+EE VE SEKKKKKKD   KEAKEAGTPET KS+KKKKKKD ESGNDDS
Sbjct: 481 DKEKGTAEEPSDEENVENSEKKKKKKDKEAKEAKEAGTPETQKSKKKKKKKDNESGNDDS 540

Query: 541 QLPAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAE 567
           QL AADVQNGEA  H DGSEKKKKKK K+ KE  E
Sbjct: 541 QLHAADVQNGEADGHVDGSEKKKKKKDKEAKEAKE 575

[Close]

BLAST of MELO3C002022 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 944.1 bits (2439), Expect = 5.5e-271
Identity = 511/572 (89.34%), Postives = 526/572 (91.96%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQP K+ ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGY PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KV+RALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI VGEEVVLMTTKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATE 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGD LVAS FA +
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAAD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKT------EEVEEVGKKEKKKKKKD 481
           +A       +E+ KD GGRKRKLDED EAAP KKLKT      EEV+EVGKKEKKKKKKD
Sbjct: 438 AA---DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 497

Query: 482 KEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPA 541
           KEKG   EP++EE VE SEKKKKKKDKEAKEAGTPET KSEKKKKKKDKESGND SQ PA
Sbjct: 498 KEKGNV-EPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPA 557

Query: 542 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
             +QNGEA  H DGSEKKKKKKKK   +DAEE
Sbjct: 558 G-IQNGEADGHVDGSEKKKKKKKK--NKDAEE 582

[Close]

BLAST of MELO3C002022 vs. ExPASy TrEMBL
Match: A0A1S3BLH6 (LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491111 PE=3 SV=1)

HSP 1 Score: 1076.6 bits (2783), Expect = 0.0e+00
Identity = 566/567 (99.82%), Postives = 566/567 (99.82%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420
           RDTYPRKWGLGPRASMK KLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT
Sbjct: 361 RDTYPRKWGLGPRASMKXKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420

Query: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480
           ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT
Sbjct: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480

Query: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
           AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 567

[Close]

BLAST of MELO3C002022 vs. ExPASy TrEMBL
Match: A0A0A0LQ86 (PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039120 PE=3 SV=1)

HSP 1 Score: 961.8 bits (2485), Expect = 1.2e-276
Identity = 507/567 (89.42%), Postives = 512/567 (90.30%), Query Frame = 0


Query: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60
           MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL
Sbjct: 1   MSKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPL 60

Query: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120
           PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL
Sbjct: 61  PSGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNL 120

Query: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180
           IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR
Sbjct: 121 IVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKR 180

Query: 181 QLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240
           QLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG
Sbjct: 181 QLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSG 240

Query: 241 ILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300
           ILGEKDNMVTMHDVMDAQW YDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG
Sbjct: 241 ILGEKDNMVTMHDVMDAQWFYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYG 300

Query: 301 AKLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360
           AKLMIPGLLRFENDIG GEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD
Sbjct: 301 AKLMIPGLLRFENDIGAGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMD 360

Query: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFAT 420
           RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNLVLPTGGD LVASAF +
Sbjct: 361 RDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVS 420

Query: 421 ESATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKTEEVEEVGKKEKKKKKKDKEKGT 480
           +SATAKPTAAEESGKDDGGRKRKLDE+TEAAPAKKLKTEEVEE                 
Sbjct: 421 DSATAKPTAAEESGKDDGGRKRKLDEETEAAPAKKLKTEEVEE----------------- 480

Query: 481 AEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAADVQN 540
                                             SEKKKKKKDKESGNDDSQLPAADVQN
Sbjct: 481 ----------------------------------SEKKKKKKDKESGNDDSQLPAADVQN 516

Query: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 568
           GEAHDHDDGSEKKKKKKKKKNKEDAEE
Sbjct: 541 GEAHDHDDGSEKKKKKKKKKNKEDAEE 516

[Close]

BLAST of MELO3C002022 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 944.1 bits (2439), Expect = 2.7e-271
Identity = 511/572 (89.34%), Postives = 526/572 (91.96%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQP K+ ADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SGY PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI
Sbjct: 78  SGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KV+RALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI VGEEVVLMTTKGEAIALGIAEMTTAVMATCDHG+VAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATE 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGD LVAS FA +
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDSLVASHFAAD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLKT------EEVEEVGKKEKKKKKKD 481
           +A       +E+ KD GGRKRKLDED EAAP KKLKT      EEV+EVGKKEKKKKKKD
Sbjct: 438 AA---DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEAEEVDEVGKKEKKKKKKD 497

Query: 482 KEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPA 541
           KEKG   EP++EE VE SEKKKKKKDKEAKEAGTPET KSEKKKKKKDKESGND SQ PA
Sbjct: 498 KEKGNV-EPADEENVEKSEKKKKKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPA 557

Query: 542 ADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
             +QNGEA  H DGSEKKKKKKKK   +DAEE
Sbjct: 558 G-IQNGEADGHVDGSEKKKKKKKK--NKDAEE 582

[Close]

BLAST of MELO3C002022 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 931.0 bits (2405), Expect = 2.3e-267
Identity = 508/573 (88.66%), Postives = 523/573 (91.27%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQPPK+VADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHS+VPDVSKVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI VGEEVVLMTTKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATE 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGD LVAS FA++
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFASD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLK------TEEVEEVGKKEKKKKKKD 481
           SAT      +E+ KD GGRKRKLDE+TEAAPAKKLK       EEVEE GKKEKKKKKKD
Sbjct: 438 SATV-DEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKD 497

Query: 482 KEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTP-ETPKSEKKKKKKDKESGNDDSQLP 541
           KEKG+  EPS+EE     EKKKKKKDKE KEAGTP ET KSEKKKKKKDKESG       
Sbjct: 498 KEKGSG-EPSDEENTVRLEKKKKKKDKEGKEAGTPEETQKSEKKKKKKDKESG------- 557

Query: 542 AADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
             DVQNGEA DH DGSE KKKKKKKKNKEDAEE
Sbjct: 558 VGDVQNGEADDHVDGSE-KKKKKKKKNKEDAEE 580

[Close]

BLAST of MELO3C002022 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 922.2 bits (2382), Expect = 1.1e-264
Identity = 508/574 (88.50%), Postives = 522/574 (90.94%), Query Frame = 0


Query: 2   SKHSSKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLP 61
           SK    S AV SDEQPPK+VADFMIKPQSFTP VDTSQWPILLKNYDRLNVRTGHYTPLP
Sbjct: 18  SKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILLKNYDRLNVRTGHYTPLP 77

Query: 62  SGYLPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLI 121
           SG+ PLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLI
Sbjct: 78  SGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLI 137

Query: 122 VCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQ 181
           VCIDRATRLVKSQQGAGKEYVCVARLHS+VPDVSKVARALETLTGAVFQRPPLISAVKRQ
Sbjct: 138 VCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQ 197

Query: 182 LRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 241
           LRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI
Sbjct: 198 LRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGI 257

Query: 242 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 301
           LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA
Sbjct: 258 LGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGA 317

Query: 302 KLMIPGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDR 361
           KLMIPGLLRFENDI VGEEVVLMTTKGEAIALGIAEMTT+VMATCDHGVVAKIKRVVMDR
Sbjct: 318 KLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMATCDHGVVAKIKRVVMDR 377

Query: 362 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATE 421
           DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EW+RNLVLPTGGD LVAS FAT+
Sbjct: 378 DTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNLVLPTGGDSLVASVFATD 437

Query: 422 SATAKPTAAEESGKDDGGRKRKLDEDTEAAPAKKLK------TEEVEEVGKKE-KKKKKK 481
           SAT      +E+ KD GGRKRKLDE+TEAAPAKKLK       EEVEE GKKE KKKKKK
Sbjct: 438 SATV-DEGKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDAEEVEEGGKKEKKKKKKK 497

Query: 482 DKEKGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTP-ETPKSEKKKKKKDKESGNDDSQL 541
           DKEKG+  EPS+EE  E SE KKKKKDKE KEAGTP E  KSEKKKKKKDKESG      
Sbjct: 498 DKEKGSG-EPSDEENTEQSE-KKKKKDKEGKEAGTPEEKQKSEKKKKKKDKESG------ 557

Query: 542 PAADVQNGEAHDHDDGSEKKKKKKKKKNKEDAEE 568
              DVQNGEA DH DGSE KKKKKKKKNKEDAEE
Sbjct: 558 -VGDVQNGEADDHVDGSE-KKKKKKKKNKEDAEE 580

[Close]

BLAST of MELO3C002022 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 763.8 bits (1971), Expect = 9.5e-221
Identity = 419/571 (73.38%), Postives = 472/571 (82.66%), Query Frame = 0


Query: 6   SKSSAVSSDEQPPKEVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYL 65
           SK       E    +  D+MIKPQSFTP +DTSQWPILLKNYDRLNVRTGHYTP+ +G+ 
Sbjct: 9   SKKKKQDKTENDAADTGDYMIKPQSFTPAIDTSQWPILLKNYDRLNVRTGHYTPISAGHS 68

Query: 66  PLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCID 125
           PLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+KTGHSGTLDPKVTGNLIVCID
Sbjct: 69  PLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCID 128

Query: 126 RATRLVKSQQGAGKEYVCVARLHSAVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIR 185
           RATRLVKSQQGAGKEYVCVARLHSAVPDV+KVARALE+LTGAVFQRPPLISAVKRQLRIR
Sbjct: 129 RATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLTGAVFQRPPLISAVKRQLRIR 188

Query: 186 TIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEK 245
           TIYESKLLEYDA++HLVVFW+SCEAGTY+RT+CVHLGL+LGVGGHMQELRRVRSGILGE 
Sbjct: 189 TIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLLGVGGHMQELRRVRSGILGEN 248

Query: 246 DNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMI 305
           +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSYKRLVVKDSAVNAICYGAKLMI
Sbjct: 249 NNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYKRLVVKDSAVNAICYGAKLMI 308

Query: 306 PGLLRFENDIGVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYP 365
           PGLLRFENDI VG EVVLMTTKGEAIA+GIAEMTT+VMATCDHGVVAKIKRVVMDRDTYP
Sbjct: 309 PGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDHGVVAKIKRVVMDRDTYP 368

Query: 366 RKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNLVLPTGGDFLVASAFATESATA 425
           RKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+VLPTGGD ++A A A   A  
Sbjct: 369 RKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAA---APE 428

Query: 426 KPTAAEESGKDDGGRKRKLDED--------TEAAPAKKLKTEEVEEVGKKEKKKKKKDKE 485
           +  A  E+G+    RKRK D+         T+ +  K+++ EE EE  K  KKKKKKDKE
Sbjct: 429 EIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKE 488

Query: 486 KGTAEEPSNEEIVEYSEKKKKKKDKEAKEAGTPETPKSEKKKKKKDKESGNDDSQLPAAD 545
           +   EE  +E+     ++KKKKKDK+ +      +PKSEKKKKKK K++        A D
Sbjct: 489 EEKEEEAGSEK-----KEKKKKKDKKEEVIEEVASPKSEKKKKKKSKDTE------AAVD 548

Query: 546 VQNGEAHDHDDGSEKKK-KKKKKKNKEDAEE 568
            ++  A +  +  +KKK KKKK K+ ED EE
Sbjct: 549 AEDESAAEKSEKKKKKKDKKKKNKDSEDDEE 565

[Close]

BLAST of MELO3C002022 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-20
Identity = 64/202 (31.68%), Postives = 98/202 (48.51%), Query Frame = 0


Query: 79  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 138
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 139 KEYVCVARLHSAVPDV-----------------SKVARALETLTGAVFQRPPLISAVK-- 198
           K Y  V RL  A   +                   + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 199 ------RQLRIRTIYES----KLLEYDAEKHL-----VVFWISCEAGTYVRTLCVHLGLI 247
                 +  R  T+  S     + ++D E+ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of MELO3C002022 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	1.3e-219	73.38	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q5ZJH9	1.0e-174	63.33	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
P40615	1.5e-170	63.19	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
Q9ESX5	2.6e-170	62.40	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]
O14007	3.3e-170	64.32	H/ACA ribonucleoprotein complex subunit cbf5 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of MELO3C002022 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449192.1	0.0e+00	99.82	PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 [Cucum...	[more]
XP_011650148.1	7.6e-305	97.88	H/ACA ribonucleoprotein complex subunit 4 [Cucumis sativus] >KAE8652522.1 hypoth...	[more]
XP_038894523.1	1.4e-279	92.09	H/ACA ribonucleoprotein complex subunit 4-like [Benincasa hispida]	[more]
XP_038894282.1	6.9e-274	89.91	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4-like [Benincasa h...	[more]
XP_022145634.1	5.5e-271	89.34	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]

BLAST of MELO3C002022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLH6	0.0e+00	99.82	LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 4 OS=Cucumis melo O...	[more]
A0A0A0LQ86	1.2e-276	89.42	PUA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039120 PE=3 SV...	[more]
A0A6J1CVU2	2.7e-271	89.34	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	2.3e-267	88.66	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	1.1e-264	88.50	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of MELO3C002022 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	9.5e-221	73.38	homologue of NAP57	[more]
AT5G14460.1	2.9e-20	31.68	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 285..359 e-value: 1.0E-23 score: 94.8
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 285..357 e-value: 1.2E-20 score: 73.3
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 36..94 e-value: 1.4E-33 score: 127.6
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 37..94 e-value: 5.8E-30 score: 103.1
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 37..368 e-value: 2.7E-181 score: 603.8
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 70..276 e-value: 2.7E-181 score: 603.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..530
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 421..567
None	No IPR available	PANTHER	PTHR23127:SF3	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4	coord: 3..564
None	No IPR available	PROSITE	PS50890	PUA	coord: 284..359 score: 18.908768
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 76..258 e-value: 5.08303E-135 score: 388.158
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 98..214 e-value: 2.1E-19 score: 70.3
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 44..369 e-value: 1.6E-160 score: 531.5
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 3..564
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 215..281 e-value: 1.2E-22 score: 79.8
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 281..356 e-value: 5.1E-8 score: 31.1
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 284..365
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 37..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002022.1	MELO3C002022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding