MELO3C001494 (gene) Melon (DHL92) v4

Overview
NameMELO3C001494
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPectinesterase
Locationchr08: 4051118 .. 4051309 (+)
RNA-Seq ExpressionMELO3C001494
SyntenyMELO3C001494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACTCTGTACCTACATTATGGAAGACAGTATTTGAAGGATTGTTACATCGAAGGAAGTGTGGACTTCATATTTGGCAACAGCACTGCTTTGTTGGAGCATTGTCATGTCCACTGCAAGTCGAAAGGCTTTATTACTGCACAGAGCAGAAAATCTTCTCAAGAGACGACAGGTTACGTGTTCTTGAGGTGC

mRNA sequence

GATACTCTGTACCTACATTATGGAAGACAGTATTTGAAGGATTGTTACATCGAAGGAAGTGTGGACTTCATATTTGGCAACAGCACTGCTTTGTTGGAGCATTGTCATGTCCACTGCAAGTCGAAAGGCTTTATTACTGCACAGAGCAGAAAATCTTCTCAAGAGACGACAGGTTACGTGTTCTTGAGGTGC

Coding sequence (CDS)

GATACTCTGTACCTACATTATGGAAGACAGTATTTGAAGGATTGTTACATCGAAGGAAGTGTGGACTTCATATTTGGCAACAGCACTGCTTTGTTGGAGCATTGTCATGTCCACTGCAAGTCGAAAGGCTTTATTACTGCACAGAGCAGAAAATCTTCTCAAGAGACGACAGGTTACGTGTTCTTGAGGTGC

Protein sequence

DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYVFLRC
Homology
BLAST of MELO3C001494 vs. NCBI nr
Match: KAA0039456.1 (pectinesterase 31 [Cucumis melo var. makuwa] >TYK00646.1 pectinesterase 31 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV
Sbjct: 145 DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 204

Query: 61  FLRC 65
           FLRC
Sbjct: 205 FLRC 208

BLAST of MELO3C001494 vs. NCBI nr
Match: XP_008459702.1 (PREDICTED: pectinesterase 31 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV
Sbjct: 145 DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 204

Query: 61  FLRC 65
           FLRC
Sbjct: 205 FLRC 208

BLAST of MELO3C001494 vs. NCBI nr
Match: XP_004141450.1 (pectinesterase 31 [Cucumis sativus] >KGN52482.1 hypothetical protein Csa_007777 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 2.8e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV
Sbjct: 145 DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 204

Query: 61  FLRC 65
           FLRC
Sbjct: 205 FLRC 208

BLAST of MELO3C001494 vs. NCBI nr
Match: XP_027926811.1 (pectinesterase 31 [Vigna unguiculata] >QCE12608.1 pectinesterase [Vigna unguiculata])

HSP 1 Score: 138.7 bits (348), Expect = 1.8e-29
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYG+QYLKDCYIEGSVDFIFGNSTALLEHCHVHCKS+GFITAQSRKSSQETTGYV
Sbjct: 143 DTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSEGFITAQSRKSSQETTGYV 202

Query: 61  FLRC 65
           FLRC
Sbjct: 203 FLRC 206

BLAST of MELO3C001494 vs. NCBI nr
Match: XP_020988315.1 (pectinesterase 31 isoform X3 [Arachis duranensis] >XP_025624067.1 pectinesterase 31 isoform X3 [Arachis hypogaea])

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYG+QYLKDCYIEGSVDFIFGNSTALLEHCH+HCKS+GFITAQSRKSSQETTGYV
Sbjct: 174 DTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSQETTGYV 233

Query: 61  FLRC 65
           FLRC
Sbjct: 234 FLRC 237

BLAST of MELO3C001494 vs. ExPASy Swiss-Prot
Match: Q9LVQ0 (Pectinesterase 31 OS=Arabidopsis thaliana OX=3702 GN=PME31 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.4e-31
Identity = 59/64 (92.19%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLH+G+QYLKDCYIEGSVDFIFGNSTALLEHCH+HCKS+GFITAQSRKSSQE+TGYV
Sbjct: 144 DTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYV 203

Query: 61  FLRC 65
           FLRC
Sbjct: 204 FLRC 207

BLAST of MELO3C001494 vs. ExPASy Swiss-Prot
Match: Q8VYZ3 (Probable pectinesterase 53 OS=Arabidopsis thaliana OX=3702 GN=PME53 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-16
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVH--CKSKGFITAQSRKSSQETTG 60
           DTLY H GR Y KDCYIEGSVDFIFGN+ +L E CHVH      G +TAQ R S  E TG
Sbjct: 224 DTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTG 283

Query: 61  YVFLRC 65
           + F++C
Sbjct: 284 FSFVKC 289

BLAST of MELO3C001494 vs. ExPASy Swiss-Prot
Match: O49298 (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana OX=3702 GN=PME6 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCK-----SKGFITAQSRKSSQE 60
           DTLYLH  RQ+L++C I G+VDFIFG++TA+L++C+++ +      K  ITAQSRK   E
Sbjct: 380 DTLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEPDE 439

BLAST of MELO3C001494 vs. ExPASy Swiss-Prot
Match: Q4PT34 (Probable pectinesterase 56 OS=Arabidopsis thaliana OX=3702 GN=PME56 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.6e-12
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKG-----FITAQSRKSSQE 60
           DTLY + GRQ+ +DCYI G+VDFIFG + A+ ++C +  +  G      +TAQSR+    
Sbjct: 173 DTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTA 232

Query: 61  TTGYVFLRC 65
           T+G+ F +C
Sbjct: 233 TSGFSFQKC 241

BLAST of MELO3C001494 vs. ExPASy Swiss-Prot
Match: O04953 (Putative pectinesterase 52 OS=Arabidopsis thaliana OX=3702 GN=PME52 PE=2 SV=2)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCK--------SKGFITAQSRKS 60
           DT++ + GR + K+CYIEG++DFIFG+  ++ E CH++          S G+ITAQ R S
Sbjct: 123 DTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSS 182

Query: 61  SQETTGYVFLR 64
             + +G+VFLR
Sbjct: 183 DSDPSGFVFLR 193

BLAST of MELO3C001494 vs. ExPASy TrEMBL
Match: A0A5A7TBP8 (Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002680 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV
Sbjct: 145 DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 204

Query: 61  FLRC 65
           FLRC
Sbjct: 205 FLRC 208

BLAST of MELO3C001494 vs. ExPASy TrEMBL
Match: A0A0A0KVN5 (Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_5G637720 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV
Sbjct: 145 DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 204

Query: 61  FLRC 65
           FLRC
Sbjct: 205 FLRC 208

BLAST of MELO3C001494 vs. ExPASy TrEMBL
Match: A0A1S3CAW3 (Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103498742 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV
Sbjct: 145 DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 204

Query: 61  FLRC 65
           FLRC
Sbjct: 205 FLRC 208

BLAST of MELO3C001494 vs. ExPASy TrEMBL
Match: A0A4D6NGW6 (Pectinesterase OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g3855 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 8.8e-30
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYG+QYLKDCYIEGSVDFIFGNSTALLEHCHVHCKS+GFITAQSRKSSQETTGYV
Sbjct: 143 DTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSEGFITAQSRKSSQETTGYV 202

Query: 61  FLRC 65
           FLRC
Sbjct: 203 FLRC 206

BLAST of MELO3C001494 vs. ExPASy TrEMBL
Match: A0A1S3TVZ7 (Pectinesterase OS=Vigna radiata var. radiata OX=3916 GN=LOC106759333 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-29
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLHYG+QYLKDCYIEGSVDFIFGNSTALLEHCH+HCKS+GFITAQSRKSSQETTGYV
Sbjct: 143 DTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSEGFITAQSRKSSQETTGYV 202

Query: 61  FLRC 65
           FLRC
Sbjct: 203 FLRC 206

BLAST of MELO3C001494 vs. TAIR 10
Match: AT3G29090.1 (pectin methylesterase 31 )

HSP 1 Score: 134.8 bits (338), Expect = 2.4e-32
Identity = 59/64 (92.19%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKGFITAQSRKSSQETTGYV 60
           DTLYLH+G+QYLKDCYIEGSVDFIFGNSTALLEHCH+HCKS+GFITAQSRKSSQE+TGYV
Sbjct: 144 DTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSQGFITAQSRKSSQESTGYV 203

Query: 61  FLRC 65
           FLRC
Sbjct: 204 FLRC 207

BLAST of MELO3C001494 vs. TAIR 10
Match: AT5G19730.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-17
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVH--CKSKGFITAQSRKSSQETTG 60
           DTLY H GR Y KDCYIEGSVDFIFGN+ +L E CHVH      G +TAQ R S  E TG
Sbjct: 224 DTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLGAVTAQGRSSVLEDTG 283

Query: 61  YVFLRC 65
           + F++C
Sbjct: 284 FSFVKC 289

BLAST of MELO3C001494 vs. TAIR 10
Match: AT1G23200.1 (Plant invertase/pectin methylesterase inhibitor superfamily )

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-15
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCK-----SKGFITAQSRKSSQE 60
           DTLYLH  RQ+L++C I G+VDFIFG++TA+L++C+++ +      K  ITAQSRK   E
Sbjct: 380 DTLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSGQKNTITAQSRKEPDE 439

BLAST of MELO3C001494 vs. TAIR 10
Match: AT1G11370.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCKSKG-----FITAQSRKSSQE 60
           DTLY + GRQ+ +DCYI G+VDFIFG + A+ ++C +  +  G      +TAQSR+    
Sbjct: 173 DTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTA 232

Query: 61  TTGYVFLRC 65
           T+G+ F +C
Sbjct: 233 TSGFSFQKC 241

BLAST of MELO3C001494 vs. TAIR 10
Match: AT5G26810.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 9.6e-13
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 1   DTLYLHYGRQYLKDCYIEGSVDFIFGNSTALLEHCHVHCK--------SKGFITAQSRKS 60
           DT++ + GR + K+CYIEG++DFIFG+  ++ E CH++          S G+ITAQ R S
Sbjct: 123 DTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSS 182

Query: 61  SQETTGYVFLR 64
             + +G+VFLR
Sbjct: 183 DSDPSGFVFLR 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039456.12.8e-30100.00pectinesterase 31 [Cucumis melo var. makuwa] >TYK00646.1 pectinesterase 31 [Cucu... [more]
XP_008459702.12.8e-30100.00PREDICTED: pectinesterase 31 [Cucumis melo][more]
XP_004141450.12.8e-30100.00pectinesterase 31 [Cucumis sativus] >KGN52482.1 hypothetical protein Csa_007777 ... [more]
XP_027926811.11.8e-2996.88pectinesterase 31 [Vigna unguiculata] >QCE12608.1 pectinesterase [Vigna unguicul... [more]
XP_020988315.12.4e-2995.31pectinesterase 31 isoform X3 [Arachis duranensis] >XP_025624067.1 pectinesterase... [more]
Match NameE-valueIdentityDescription
Q9LVQ03.4e-3192.19Pectinesterase 31 OS=Arabidopsis thaliana OX=3702 GN=PME31 PE=1 SV=1[more]
Q8VYZ32.4e-1660.61Probable pectinesterase 53 OS=Arabidopsis thaliana OX=3702 GN=PME53 PE=2 SV=1[more]
O492981.1e-1353.85Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana OX=37... [more]
Q4PT343.6e-1243.48Probable pectinesterase 56 OS=Arabidopsis thaliana OX=3702 GN=PME56 PE=2 SV=1[more]
O049531.4e-1143.66Putative pectinesterase 52 OS=Arabidopsis thaliana OX=3702 GN=PME52 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A5A7TBP81.4e-30100.00Pectinesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00268... [more]
A0A0A0KVN51.4e-30100.00Pectinesterase OS=Cucumis sativus OX=3659 GN=Csa_5G637720 PE=4 SV=1[more]
A0A1S3CAW31.4e-30100.00Pectinesterase OS=Cucumis melo OX=3656 GN=LOC103498742 PE=4 SV=1[more]
A0A4D6NGW68.8e-3096.88Pectinesterase OS=Vigna unguiculata OX=3917 GN=DEO72_LG10g3855 PE=4 SV=1[more]
A0A1S3TVZ71.1e-2995.31Pectinesterase OS=Vigna radiata var. radiata OX=3916 GN=LOC106759333 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G29090.12.4e-3292.19pectin methylesterase 31 [more]
AT5G19730.11.7e-1760.61Pectin lyase-like superfamily protein [more]
AT1G23200.17.9e-1553.85Plant invertase/pectin methylesterase inhibitor superfamily [more]
AT1G11370.12.5e-1343.48Pectin lyase-like superfamily protein [more]
AT5G26810.19.6e-1343.66Pectin lyase-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 1..64
e-value: 5.3E-18
score: 64.8
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..64
e-value: 6.8E-26
score: 93.4
NoneNo IPR availablePANTHERPTHR31321:SF12PECTINESTERASE 31coord: 1..64
NoneNo IPR availablePANTHERPTHR31321ACYL-COA THIOESTER HYDROLASE YBHC-RELATEDcoord: 1..64
IPR033131Pectinesterase, Asp active sitePROSITEPS00503PECTINESTERASE_2coord: 17..26
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C001494.1MELO3C001494.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042545 cell wall modification
molecular_function GO:0030599 pectinesterase activity