MELO3C001390 (gene) Melon (DHL92) v4

Overview


Name	MELO3C001390
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	WD repeat-containing protein RUP2-like
Location	chr07: 16656178 .. 16656523 (-)
RNA-Seq Expression	MELO3C001390
Synteny	MELO3C001390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGATTCAATCTGACTCAAAACC

mRNA sequence

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGATTCAATCTGACTCAAAACC

Coding sequence (CDS)

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGAATGCACCTTGGTAGCTGGCGGGTCGGATGGCGTTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTTTTTTTGA

Protein sequence

MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF

Homology

[Close]

BLAST of MELO3C001390 vs. NCBI nr
Match: TYK31084.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 237.3 bits (604), Expect = 6.3e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108

[Close]

BLAST of MELO3C001390 vs. NCBI nr
Match: KAA0038490.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 5.3e-58
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 268 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 327

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 328 EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 375

[Close]

BLAST of MELO3C001390 vs. NCBI nr
Match: KAA0035439.1 (WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.3e-56
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRF 108
           EFDGGMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKK F
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKSF 107

[Close]

BLAST of MELO3C001390 vs. NCBI nr
Match: XP_004148378.3 (LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55
Identity = 106/116 (91.38%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRXGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDG--------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDG        GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 330 EFDGGVGVGVGVGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 385

[Close]

BLAST of MELO3C001390 vs. NCBI nr
Match: XP_038887335.1 (WD repeat-containing protein RUP2-like [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 2.9e-48
Identity = 96/107 (89.72%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEE   ARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 272 MWKTEE---ARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDKRWGEPIWVK 331

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRF 108
           EFD  +GSGYGLVSSVCWRQVGE ECTLVAGGSDGVLQVFVG K+ F
Sbjct: 332 EFD-RVGSGYGLVSSVCWRQVGEHECTLVAGGSDGVLQVFVGQKRLF 374

[Close]

BLAST of MELO3C001390 vs. ExPASy Swiss-Prot
Match: Q9FFA7 (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 9.2e-37
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RTYEGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G  +CTLVAGGSDGVLQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]

BLAST of MELO3C001390 vs. ExPASy Swiss-Prot
Match: Q9LTJ6 (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-28
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 9   GARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRTY GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]

BLAST of MELO3C001390 vs. ExPASy Swiss-Prot
Match: P93471 (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V  +   I CGSE   VFVY K   +P+    F      D   
Sbjct: 580 VRTFRGHANEKNFVGLTV--RSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAED 639

Query: 73  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 640 EAGSYFISAVCWK---SDRPTILTANSQGTIKVLV 669

[Close]

BLAST of MELO3C001390 vs. ExPASy Swiss-Prot
Match: P43254 (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-08
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 0


Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]

BLAST of MELO3C001390 vs. ExPASy Swiss-Prot
Match: Q9LJR3 (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-07
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------G 72
           + ++ GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         
Sbjct: 752 LHSFTGHTNLKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLE 811

Query: 73  MGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV 100
           +      +SS+CWR    Q  TLVA  S+G +++
Sbjct: 812 VDDASQFISSICWR---GQSSTLVAANSNGNIKI 840

[Close]

BLAST of MELO3C001390 vs. ExPASy TrEMBL
Match: A0A5D3E556 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003610 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.1e-59
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 108

[Close]

BLAST of MELO3C001390 vs. ExPASy TrEMBL
Match: A0A5A7T553 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00140 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.6e-58
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 268 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 327

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 328 EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 375

[Close]

BLAST of MELO3C001390 vs. ExPASy TrEMBL
Match: A0A5A7T240 (WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00620 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 6.4e-57
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60

Query: 61  EFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRF 108
           EFDGGMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKK F
Sbjct: 61  EFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKSF 107

[Close]

BLAST of MELO3C001390 vs. ExPASy TrEMBL
Match: A0A0A0LHK2 (Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 106/116 (91.38%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDG--------GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           EFDG        GMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKR F
Sbjct: 330 EFDGGVGVGVGVGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRSF 385

[Close]

BLAST of MELO3C001390 vs. ExPASy TrEMBL
Match: A0A6J1GKZ5 (WD repeat-containing protein RUP2-like OS=Cucurbita moschata OX=3662 GN=LOC111455289 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 96/112 (85.71%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MWKTEE----GGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEP 60
           MWK EE    GGGARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGE 
Sbjct: 246 MWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDKRWGEA 305

Query: 61  IWVKEFDGGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRFF 109
           +WV+EFD  +GSGYGLVSSVCWRQVGE ECTLVAGGSDGVL+VFVG KKR F
Sbjct: 306 VWVEEFD-RVGSGYGLVSSVCWRQVGEDECTLVAGGSDGVLKVFVGEKKRSF 356

[Close]

BLAST of MELO3C001390 vs. TAIR 10
Match: AT5G23730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 154.1 bits (388), Expect = 6.5e-38
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RTYEGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G  +CTLVAGGSDGVLQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]

BLAST of MELO3C001390 vs. TAIR 10
Match: AT5G52250.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-29
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 9   GARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRTY GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]

BLAST of MELO3C001390 vs. TAIR 10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-09
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 0


Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]

BLAST of MELO3C001390 vs. TAIR 10
Match: AT3G15354.1 (SPA1-related 3 )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------G 72
           + ++ GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         
Sbjct: 744 LHSFTGHTNLKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLE 803

Query: 73  MGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV 100
           +      +SS+CWR    Q  TLVA  S+G +++
Sbjct: 804 VDDASQFISSICWR---GQSSTLVAANSNGNIKI 832

[Close]

BLAST of MELO3C001390 vs. TAIR 10
Match: AT1G53090.1 (SPA1-related 4 )

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-08
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF-------DGG 72
           + ++ GH N ++FVGLSV    G I  GSE   VFVY K +  P+   +F       +  
Sbjct: 702 LHSFMGHTNVKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELE 761

Query: 73  MGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQV 100
           +      +SSVCWR    Q  TLVA  S G +++
Sbjct: 762 VDDASQFISSVCWR---GQSSTLVAANSTGNIKI 790

The following BLAST results are available for this feature:

BLAST of MELO3C001390 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31084.1	6.3e-59	100.00	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
KAA0038490.1	5.3e-58	99.07	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
KAA0035439.1	1.3e-56	97.20	WD repeat-containing protein RUP2-like [Cucumis melo var. makuwa]	[more]
XP_004148378.3	4.2e-55	91.38	LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Cucumis sativus]	[more]
XP_038887335.1	2.9e-48	89.72	WD repeat-containing protein RUP2-like [Benincasa hispida]	[more]

BLAST of MELO3C001390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFA7	9.2e-37	66.67	WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 S...	[more]
Q9LTJ6	1.6e-28	64.58	WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 S...	[more]
P93471	1.1e-08	35.79	E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1	[more]
P43254	6.9e-08	33.68	E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV...	[more]
Q9LJR3	4.5e-07	35.11	Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1	[more]

BLAST of MELO3C001390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E556	3.1e-59	100.00	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7T553	2.6e-58	99.07	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7T240	6.4e-57	97.20	WD repeat-containing protein RUP2-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LHK2	1.2e-55	91.38	Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV...	[more]
A0A6J1GKZ5	1.4e-48	85.71	WD repeat-containing protein RUP2-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of MELO3C001390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23730.1	6.5e-38	66.67	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52250.1	1.1e-29	64.58	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G32950.1	4.9e-09	33.68	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G15354.1	3.2e-08	35.11	SPA1-related 3	[more]
AT1G53090.1	5.4e-08	36.17	SPA1-related 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..101 e-value: 8.8E-19 score: 69.6
IPR044616	WD repeat-containing protein RUP1/2	PANTHER	PTHR45389	WD REPEAT-CONTAINING PROTEIN RUP1	coord: 1..106
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 9..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C001390.1	MELO3C001390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding