MELO3C001113 (gene) Melon (DHL92) v4

Overview
NameMELO3C001113
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionU4/U6 small nuclear ribonucleoprotein Prp3
Locationchr06: 15373966 .. 15374162 (-)
RNA-Seq ExpressionMELO3C001113
SyntenyMELO3C001113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTGTCAACGGGATATTTGACGGTAGGGCAAGGAGGGACCGGAAGCGGTTTGAGGATCGAGTGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATATAAGTCCAAAGGAGACGTGGGGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAAGGTCACTGGGGAAT

mRNA sequence

GAATTGTCAACGGGATATTTGACGGTAGGGCAAGGAGGGACCGGAAGCGGTTTGAGGATCGAGTGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATATAAGTCCAAAGGAGACGTGGGGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAAGGTCACTGGGGAAT

Coding sequence (CDS)

ATTGTCAACGGGATATTTGACGGTAGGGCAAGGAGGGACCGGAAGCGGTTTGAGGATCGAGTGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGCGAAAGTGATTGAATATAAGTCCAAAGGAGACGTGGGGGATGGAAAAGTTCAGTTTGGAGGCACCACTGATGAAAAAAGGTCACTGGGGAAT

Protein sequence

IVNGIFDGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Homology
BLAST of MELO3C001113 vs. NCBI nr
Match: KAA0047368.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 48  GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 105

BLAST of MELO3C001113 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 213 GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

BLAST of MELO3C001113 vs. NCBI nr
Match: TYK00660.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 6.3e-22
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFE+RVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 62  GRARRDRKRFENRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 119

BLAST of MELO3C001113 vs. NCBI nr
Match: KAA0025992.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 194 GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 251

BLAST of MELO3C001113 vs. NCBI nr
Match: TYK14912.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.1e-21
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0

Query: 7  DGRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
          DGRARRDRKRFEDRVKEED+GGNVDEKHAKVIEYKS+GDVGDGKVQFGGTTDEK SLGN
Sbjct: 9  DGRARRDRKRFEDRVKEEDDGGNVDEKHAKVIEYKSEGDVGDGKVQFGGTTDEKGSLGN 67

BLAST of MELO3C001113 vs. ExPASy TrEMBL
Match: A0A5A7SXX5 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00020 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.1e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 213 GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

BLAST of MELO3C001113 vs. ExPASy TrEMBL
Match: A0A5A7TWT4 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00170 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.1e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 48  GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 105

BLAST of MELO3C001113 vs. ExPASy TrEMBL
Match: A0A1S3CF39 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC103500170 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.1e-23
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 213 GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 270

BLAST of MELO3C001113 vs. ExPASy TrEMBL
Match: A0A5D3BNR8 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002820 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-22
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFE+RVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN
Sbjct: 62  GRARRDRKRFENRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 119

BLAST of MELO3C001113 vs. ExPASy TrEMBL
Match: A0A5A7SLH4 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003130 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.8e-22
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 8   GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEKRSLGN 66
           GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDV DGKVQFGGTTDEKRSLGN
Sbjct: 194 GRARRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVEDGKVQFGGTTDEKRSLGN 251

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047368.11.7e-22100.00U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
XP_008461606.11.7e-22100.00PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019... [more]
TYK00660.16.3e-2298.28U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
KAA0025992.11.4e-2198.28U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
TYK14912.13.1e-2194.92U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SXX58.1e-23100.00U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7TWT48.1e-23100.00U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3CF398.1e-23100.00U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC1035001... [more]
A0A5D3BNR83.1e-2298.28U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7SLH46.8e-2298.28U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C001113.1MELO3C001113.1mRNA