Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATCTAAATGTTAACGACTAGGTAAACGGTGGGGTGCGAACCGATGAAAACGACAGAGGACTGAGTTTTCGTGG ATGGGAAAGACGAAATCTTGGAAGGCGACTTCATTTCGAGAGAAGGCTCAACAGAAAC ACGACAGAGGATTTGATTTTTGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACGAACAAGGAAGACGAAGAGAAGGTTCGTGCGAGAGAT mRNA sequence
ATGGTGAATCTAAATGTTAACGACTAGGTAAACGGTGGGGTGCGAACCGATGAAAACGACAGAGGACTGAGTTTTCGTGGATGGGAAAGACGAAATCTTGGAAGGCGACTTCATTTCGAGAGAAGGCTCAACAGAAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACGAACAAGGAAGACGAAGAGAAGGTTCGTGCGAGAGAT Coding sequence (CDS)
ATGGGAAAGACGAAATCTTGGAAGGCGACTTCATTTCGAGAGAAGGCTCAACAGAAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACGAACAAGGAAGACGAAGAGAAGGTTCGTGCGAGAGAT Protein sequence
MGKTKSWKATSFREKAQQKQGGRREGSCERFRVMTNKEDEEKVRARD
Homology
BLAST of MELO3C000708 vs. NCBI nr
Match:
KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])
HSP 1 Score: 54.7 bits (130), Expect = 2.5e-04
Identity = 32/44 (72.73%), Postives = 32/44 (72.73%), Query Frame = 0
Query: 8 KATSFREKAQQK---------QGGRREGSCERFRVMTNKEDEEK 43 KA S REKAQQK QGGRREGSCERFRVM NKEDEEK Sbjct: 3 KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46
BLAST of MELO3C000708 vs. ExPASy TrEMBL
Match:
A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 1.2e-04
Identity = 32/44 (72.73%), Postives = 32/44 (72.73%), Query Frame = 0
Query: 8 KATSFREKAQQK---------QGGRREGSCERFRVMTNKEDEEK 43 KA S REKAQQK QGGRREGSCERFRVM NKEDEEK Sbjct: 3 KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0050651.1 2.5e-04 72.73 uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5D3C784 1.2e-04 72.73 Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
A T G G T G A A T C T A A A T G T T A A C G A C T A G G T A A A C G G T G G G G T G C G A A C C G A T G A A A A C G A C A G A G G A C T G A G T T T T C G T G G A T G G G A A A G A C G A A A T C T T G G A A G G C G A C T T C A T T T C G A G A G A A G G C T C A A C A G A A A C A A G G A G G A C G A A G A G A A G G T T C G T G C G A G A G A T T T A G G G T G A T G A C G A A C A A G G A A G A C G A A G A G A A G G T T C G T G C G A G A G A T 20 40 60 80 100 120 140 160 180 200 220 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 8..47
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..47
Relationships
The following mRNA feature(s) are a part of this gene: