MELO3C000611 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000611
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	SUPPRESSOR OF ABI3-5-like
Location	chr03: 541208 .. 541683 (+)
RNA-Seq Expression	MELO3C000611
Synteny	MELO3C000611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGCAGCACAGACAATGATGGACAAGATTGGTGATGATGGTTTAGTTGTAGATGGCAGGAAGCTTTTCTTTGAGTACAGGTTTGTTCATTTGTCTGCATAATTAAGATATATCACTCAATTTGATAGGTCTACCATTTCTCTAATTGTGTATAGGTTTCTTTTCTGTTTCTATTTTTTACTTGGAGTTTGAGAAAAGCTGGGATCATGAGAAATAGTCTCTGTATTTTATTCAATCAACAATACTTTTGTGCAAGTACGAGGCAATTCCATGGTTTAATTTTTCCTGCAAGCTTATTTTGGTTTTCATCTATTATGTACTACAGTAGTAAGCCAACGGGGGGTGCAGGAGGATCTTTTGCTGCAGAAAATACTACAAGATCAGGCCATTTTAGCAAGAACATGACAATGCCATCGGATTGGATGTGCACAATCTGTGGCTGTGTAAATTTTGCACGACGAACGTCTTGTTTTCAG

mRNA sequence

GGAGCAGCACAGACAATGATGGACAAGATTGGTGATGATGGTTTAGTTGTAGATGGCAGGAAGCTTTTCTTTGAGTACAGTAGTAAGCCAACGGGGGGTGCAGGAGGATCTTTTGCTGCAGAAAATACTACAAGATCAGGCCATTTTAGCAAGAACATGACAATGCCATCGGATTGGATGTGCACAATCTGTGGCTGTGTAAATTTTGCACGACGAACGTCTTGTTTTCAG

Coding sequence (CDS)

ATGATGGACAAGATTGGTGATGATGGTTTAGTTGTAGATGGCAGGAAGCTTTTCTTTGAGTACAGTAGTAAGCCAACGGGGGGTGCAGGAGGATCTTTTGCTGCAGAAAATACTACAAGATCAGGCCATTTTAGCAAGAACATGACAATGCCATCGGATTGGATGTGCACAATCTGTGGCTGTGTAAATTTTGCACGACGAACGTCTTGTTTTCAG

Protein sequence

MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICGCVNFARRTSCFQ

Homology

[Close]

BLAST of MELO3C000611 vs. NCBI nr
Match: KAA0046226.1 (RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa] >TYK18970.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 9.4e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG
Sbjct: 407 MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 466

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 467 CVNFARRTSCFQ 478

[Close]

BLAST of MELO3C000611 vs. NCBI nr
Match: XP_016903675.1 (PREDICTED: SUPPRESSOR OF ABI3-5-like [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 9.4e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
          MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG
Sbjct: 1  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60

Query: 61 CVNFARRTSCFQ 73
          CVNFARRTSCFQ
Sbjct: 61 CVNFARRTSCFQ 72

[Close]

BLAST of MELO3C000611 vs. NCBI nr
Match: XP_038876047.1 (LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida])

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICG
Sbjct: 342 MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNVTMPSDWMCTICG 401

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 402 CVNFARRTSCFQ 413

[Close]

BLAST of MELO3C000611 vs. NCBI nr
Match: XP_011655136.1 (SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICG
Sbjct: 342 MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNITMPSDWMCTICG 401

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 402 CVNFARRTSCFQ 413

[Close]

BLAST of MELO3C000611 vs. NCBI nr
Match: XP_031741241.1 (SUPPRESSOR OF ABI3-5 isoform X2 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICG
Sbjct: 342 MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNITMPSDWMCTICG 401

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 402 CVNFARRTSCFQ 413

[Close]

BLAST of MELO3C000611 vs. ExPASy Swiss-Prot
Match: F4JCU0 (SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana OX=3702 GN=SUA PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 7.5e-19
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTIC 60
           MMD+I  DG+V+DGRKL F Y S+PTG AG S   E+ +R  +  S+NM +P+DW+CTIC
Sbjct: 329 MMDRIEHDGIVLDGRKLMFHY-SQPTGRAGVSRRQEHASRRSYGGSRNMIVPTDWICTIC 388

Query: 61  GCVNFARRTSCFQ 73
           GC+NFARRTSCFQ
Sbjct: 389 GCINFARRTSCFQ 400

[Close]

BLAST of MELO3C000611 vs. ExPASy TrEMBL
Match: A0A5D3D622 (RNA-binding protein 5-B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00610 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.6e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG
Sbjct: 407 MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 466

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 467 CVNFARRTSCFQ 478

[Close]

BLAST of MELO3C000611 vs. ExPASy TrEMBL
Match: A0A1S4E6Q5 (SUPPRESSOR OF ABI3-5-like OS=Cucumis melo OX=3656 GN=LOC107992329 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.6e-35
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
          MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG
Sbjct: 1  MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60

Query: 61 CVNFARRTSCFQ 73
          CVNFARRTSCFQ
Sbjct: 61 CVNFARRTSCFQ 72

[Close]

BLAST of MELO3C000611 vs. ExPASy TrEMBL
Match: A0A0A0KR81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G319920 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKN+TMPSDWMCTICG
Sbjct: 342 MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNITMPSDWMCTICG 401

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 402 CVNFARRTSCFQ 413

[Close]

BLAST of MELO3C000611 vs. ExPASy TrEMBL
Match: A0A6J1CIZ6 (SUPPRESSOR OF ABI3-5 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011889 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIG+DGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHF+KNM MPSDWMCTICG
Sbjct: 344 MMDKIGEDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFNKNMAMPSDWMCTICG 403

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 404 CVNFARRTSCFQ 415

[Close]

BLAST of MELO3C000611 vs. ExPASy TrEMBL
Match: A0A6J1CKU1 (SUPPRESSOR OF ABI3-5 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111011889 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFSKNMTMPSDWMCTICG 60
           MMDKIG+DGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHF+KNM MPSDWMCTICG
Sbjct: 344 MMDKIGEDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGHFNKNMAMPSDWMCTICG 403

Query: 61  CVNFARRTSCFQ 73
           CVNFARRTSCFQ
Sbjct: 404 CVNFARRTSCFQ 415

[Close]

BLAST of MELO3C000611 vs. TAIR 10
Match: AT3G54230.2 (suppressor of abi3-5 )

HSP 1 Score: 99.8 bits (247), Expect = 9.8e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTIC 60
           MMD+I  DG+V+DGRKL F YSS+PTG AG S   E+ +R  +  S+NM +P+DW+CTIC
Sbjct: 329 MMDRIEHDGIVLDGRKLMFHYSSQPTGRAGVSRRQEHASRRSYGGSRNMIVPTDWICTIC 388

Query: 61  GCVNFARRTSCFQ 73
           GC+NFARRTSCFQ
Sbjct: 389 GCINFARRTSCFQ 401

[Close]

BLAST of MELO3C000611 vs. TAIR 10
Match: AT3G54230.1 (suppressor of abi3-5 )

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-20
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1   MMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGSFAAENTTRSGH-FSKNMTMPSDWMCTIC 60
           MMD+I  DG+V+DGRKL F Y S+PTG AG S   E+ +R  +  S+NM +P+DW+CTIC
Sbjct: 329 MMDRIEHDGIVLDGRKLMFHY-SQPTGRAGVSRRQEHASRRSYGGSRNMIVPTDWICTIC 388

Query: 61  GCVNFARRTSCFQ 73
           GC+NFARRTSCFQ
Sbjct: 389 GCINFARRTSCFQ 400

The following BLAST results are available for this feature:

BLAST of MELO3C000611 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046226.1	9.4e-35	100.00	RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa] >TYK18970.1 RNA-bi...	[more]
XP_016903675.1	9.4e-35	100.00	PREDICTED: SUPPRESSOR OF ABI3-5-like [Cucumis melo]	[more]
XP_038876047.1	2.7e-34	98.61	LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida]	[more]
XP_011655136.1	2.7e-34	98.61	SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus]	[more]
XP_031741241.1	2.7e-34	98.61	SUPPRESSOR OF ABI3-5 isoform X2 [Cucumis sativus]	[more]

BLAST of MELO3C000611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JCU0	7.5e-19	61.64	SUPPRESSOR OF ABI3-5 OS=Arabidopsis thaliana OX=3702 GN=SUA PE=1 SV=2	[more]

BLAST of MELO3C000611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D622	4.6e-35	100.00	RNA-binding protein 5-B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E6Q5	4.6e-35	100.00	SUPPRESSOR OF ABI3-5-like OS=Cucumis melo OX=3656 GN=LOC107992329 PE=4 SV=1	[more]
A0A0A0KR81	1.3e-34	98.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G319920 PE=4 SV=1	[more]
A0A6J1CIZ6	1.1e-33	95.83	SUPPRESSOR OF ABI3-5 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011889 P...	[more]
A0A6J1CKU1	1.1e-33	95.83	SUPPRESSOR OF ABI3-5 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111011889 P...	[more]

BLAST of MELO3C000611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54230.2	9.8e-22	63.01	suppressor of abi3-5	[more]
AT3G54230.1	5.4e-20	61.64	suppressor of abi3-5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	4.10.1060.10		coord: 45..72 e-value: 2.0E-8 score: 35.4
None	No IPR available	PANTHER	PTHR13948	RNA-BINDING PROTEIN	coord: 1..72
None	No IPR available	PANTHER	PTHR13948:SF3	FI21118P1	coord: 1..72
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 46..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000611.1	MELO3C000611.1	mRNA