MELO3C000601.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C000601.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	DNA-directed RNA polymerase subunit beta'
Location	scaffold_chloroplast2: 152170 .. 154523 (+)
RNA-Seq Expression	MELO3C000601.jh1
Synteny	MELO3C000601.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAACTGTCATCCCATTCAATCGAATTGGGATGCCCCGGATCTGACATGTGGCTTGCTTGGTAGGAGTAACATGAAGCTCAGAATTTTGGGTGTAGTCAATACTCCCATCCCAAATAAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTTTTAGTTCTACCTCGTGAAAAAAAACTTATTTCTTTTGTGTAATTAACCATTCCTTTTTCTTTCAGAAAGAAATGAAATTATGTTCAAATAAGCAAATATGTCATGGTTAAAGGAGTCTATCCATCGCATATAGGCTTTAAGGACATCGTGGCATAACCGTCGAGGTAAAGTAGGGACCTAAAAGATCGAATGGAACGATACAAAGACAAACAAGTAAATCCCTTATGAATTCCAAGATACACTCCTTATTAATTTTCATTAAGGGGATTCATCATTCCAAGGGAAATAGACTACTCAAAAATTTCACATTTCTTTTTTTTTTTTATGTTGTAATTGATATATTGAATATTGATATATTGAATAAAGAACTTAGAAAATTGAAATAAAAAAGCAAAAGAATCAATGTAATGTTCTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTGGGGGGTTTTATTTTATAGAATTTGAAAGCGGGAATCCCTTTATTTGATGTAACTACTTGAGCCGGATGAAAAGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCTTTTGCTAGGCCTATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCAGGGGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGCAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAA

mRNA sequence

ATGAGAAACTGTCATCCCATTCAATCGAATTGGGATGCCCCGGATCTGACATGTGGCTTGCTTGGTAGGAGTAACATGAAGCTCAGAATTTTGGGTGTAGTCAATACTCCCATCCCAAATAAAAGGGGAATTGGTCTATGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCAGGGGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGCAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAA

Coding sequence (CDS)

ATGAGAAACTGTCATCCCATTCAATCGAATTGGGATGCCCCGGATCTGACATGTGGCTTGCTTGGTAGGAGTAACATGAAGCTCAGAATTTTGGGTGTAGTCAATACTCCCATCCCAAATAAAAGGGGAATTGGTCTATGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCAGGGGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAAGGACCCGCAGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATATATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGGCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCCTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGCAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAA

Protein sequence

MRNCHPIQSNWDAPDLTCGLLGRSNMKLRILGVVNTPIPNKRGIGLCIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT

Homology

[Close]

BLAST of MELO3C000601.jh1 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 1023 bits (2645), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. NCBI nr
Match: YP_009738192.1 (RNA polymerase beta' subunit [Siraitia siamensis] >QIB71585.1 RNA polymerase beta' subunit [Siraitia siamensis])

HSP 1 Score: 1021 bits (2640), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNP NRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPCNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. NCBI nr
Match: AAZ94642.1 (RNA polymerase beta I subunit [Cucumis sativus])

HSP 1 Score: 1021 bits (2640), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 182 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 241

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 242 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 301

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 302 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 361

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 362 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 421

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 422 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 481

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 482 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 541

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKN KIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 542 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQK 601

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 602 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 661

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 662 TVGHISLYREIEEAIQGFCRACSYGT 687

[Close]

BLAST of MELO3C000601.jh1 vs. NCBI nr
Match: YP_009674382.1 (RNA polymerase beta' subunit [Siraitia grosvenorii] >QDK59380.1 RNA polymerase beta' subunit [Siraitia grosvenorii] >QIB71496.1 RNA polymerase beta' subunit [Siraitia grosvenorii])

HSP 1 Score: 1021 bits (2640), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNP NRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPCNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. NCBI nr
Match: YP_009004035.1 (RNA polymerase beta [Cucumis hystrix] >AHJ61377.1 RNA polymerase beta [Cucumis hystrix] >ASY96357.1 RNA polymerase beta' subunit [Cucumis melo subsp. agrestis] >ASY97489.1 RNA polymerase beta' subunit [Cucumis sativus var. hardwickii] >AVE15322.1 RpoC1 [Cucumis sativus var. sativus])

HSP 1 Score: 1021 bits (2640), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKN KIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 1027.7 bits (2656), Expect = 4.8e-299
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 415 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 475 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKN KIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 535 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQK 594

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 654

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 554
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 655 TVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy Swiss-Prot
Match: B1A926 (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 981.1 bits (2535), Expect = 5.2e-285
Identity = 478/506 (94.47%), Postives = 495/506 (97.83%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDL++IIDYS +EWKELGEEGP GNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLQIIIDYSFLEWKELGEEGPTGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RK+GRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQH ASN+GVAKSKIREKEPI+WEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 415 IRQHLASNMGVAKSKIREKEPIIWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQD
Sbjct: 475 AICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           ML+GLYVLTSG RRGICANRYNP NRKN++N +I +NNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 535 MLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQK 594

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRW+LDQRVIASREAPIEVHYESLGT+HEIYG+YLIV+S+KKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYLIVRSVKKEILCIYIRT 654

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 554
           TVGHISLYREIEEAIQGFCRACSY T
Sbjct: 655 TVGHISLYREIEEAIQGFCRACSYDT 680

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy Swiss-Prot
Match: Q49L07 (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 973.8 bits (2516), Expect = 8.3e-283
Identity = 475/508 (93.50%), Postives = 493/508 (97.05%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+IIDYSLVEWKELGEE P GNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVEWKELGEERPTGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RK+GRRKDFLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKIGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL LHRCGLPREIAIELFQTF+IRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLPLHRCGLPREIAIELFQTFVIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 415 IRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQD
Sbjct: 475 AICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKY--TKEPFFCNSYDAIGAYR 467
           MLIGLYVLTSGNRRGIC NRYNP NR+N++N + Y+NNYKY   KEPFFCNSYDAIGAYR
Sbjct: 535 MLIGLYVLTSGNRRGICTNRYNPWNRRNYQNERTYDNNYKYRKKKEPFFCNSYDAIGAYR 594

Query: 468 QKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYI 527
           QKRINLDSPLWLRWRLDQR+IASRE PIE+HYESLGT+HEIYG+YLIV+S+KKEI+CIYI
Sbjct: 595 QKRINLDSPLWLRWRLDQRIIASREVPIEIHYESLGTYHEIYGHYLIVRSVKKEIICIYI 654

Query: 528 RTTVGHISLYREIEEAIQGFCRACSYGT 554
           RTTVGHISL+REIEEAIQGFCRACS+GT
Sbjct: 655 RTTVGHISLFREIEEAIQGFCRACSFGT 682

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy Swiss-Prot
Match: Q68S15 (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 970.7 bits (2508), Expect = 7.0e-282
Identity = 477/507 (94.08%), Postives = 494/507 (97.44%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+IID SLVEWKELGE+GP GNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGR
Sbjct: 415 IRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQD
Sbjct: 475 AICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYT--KEPFFCNSYDAIGAYR 467
           MLIGLYVLTSGNRRGIC NRYNP NR+N++N +IY+NNYKYT  KEPFFCNSYDAIGAYR
Sbjct: 535 MLIGLYVLTSGNRRGICVNRYNPCNRRNYQNERIYDNNYKYTKKKEPFFCNSYDAIGAYR 594

Query: 468 QKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYI 527
           QKRINLDSPLWLRWRLDQRVI+++EAP+EVHYESLGT++EIYG YLIV+SIKKEIL IYI
Sbjct: 595 QKRINLDSPLWLRWRLDQRVISAKEAPLEVHYESLGTYYEIYGQYLIVRSIKKEILYIYI 654

Query: 528 RTTVGHISLYREIEEAIQGFCRACSYG 553
           RTTVGHISLYREIEEAIQGFC+ACSYG
Sbjct: 655 RTTVGHISLYREIEEAIQGFCQACSYG 681

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy Swiss-Prot
Match: Q0ZJ29 (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera OX=29760 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 965.3 bits (2494), Expect = 2.9e-280
Identity = 474/508 (93.31%), Postives = 493/508 (97.05%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQL DLDLR+IIDYSLVEWKELGEEGP GNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLDDLDLRIIIDYSLVEWKELGEEGPTGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RK+GRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLPREIAIELFQTFLIRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPREIAIELFQTFLIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQH ASNIGVAKS+IREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 415 IRQHLASNIGVAKSQIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLV KGFNADFDGDQMAVHVPLSLEAQ+EARLLMFSHMNLLS AIGDPISVPTQD
Sbjct: 475 AICLHPLVRKGFNADFDGDQMAVHVPLSLEAQSEARLLMFSHMNLLSPAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYT--KEPFFCNSYDAIGAYR 467
           MLIGLYVLTSGNRRGICANRYNP NR+N++N +I +NNY+YT  KEPFFCNSYDAIGAYR
Sbjct: 535 MLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDNNYRYTKEKEPFFCNSYDAIGAYR 594

Query: 468 QKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYI 527
            KRINL SPLWLRW+LDQR+IAS+EAPIEVHYESLGT+HEIYG+YLIV+S+KKEI CIYI
Sbjct: 595 HKRINLYSPLWLRWQLDQRLIASKEAPIEVHYESLGTYHEIYGHYLIVRSVKKEIPCIYI 654

Query: 528 RTTVGHISLYREIEEAIQGFCRACSYGT 554
           RTTVGHISLYREIEEAIQGFCRACSY T
Sbjct: 655 RTTVGHISLYREIEEAIQGFCRACSYET 682

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1023 bits (2645), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy TrEMBL
Match: A0A286NFS7 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1023 bits (2645), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy TrEMBL
Match: A0A249RYT3 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. momordica OX=2034244 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1023 bits (2645), Expect = 0.0
Identity = 506/506 (100.00%), Postives = 506/506 (100.00%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 176 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 235

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 236 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 295

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 296 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 355

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 356 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 415

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 416 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 475

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 476 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 535

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 536 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 595

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 596 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 655

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 656 TVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1021 bits (2640), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 415 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 475 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKN KIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 535 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQK 594

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 654

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 655 TVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of MELO3C000601.jh1 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1021 bits (2640), Expect = 0.0
Identity = 505/506 (99.80%), Postives = 505/506 (99.80%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED
Sbjct: 175 IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE
Sbjct: 235 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR
Sbjct: 415 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
           AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD
Sbjct: 475 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSGNRRGICANRYNPSNRKNHKN KIYNNNYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 535 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKEPFFCNSYDAIGAYRQK 594

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT
Sbjct: 595 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 654

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 553
           TVGHISLYREIEEAIQGFCRACSYGT
Sbjct: 655 TVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of MELO3C000601.jh1 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 954.9 bits (2467), Expect = 2.8e-278
Identity = 465/506 (91.90%), Postives = 484/506 (95.65%), Query Frame = 0


Query: 48  IPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWED 107
           IPLFFTTQGFD FRNREISTGAGAIREQLADLDLR+II+ SLVEWK+LGEEGP GNEWED
Sbjct: 175 IPLFFTTQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVEWKQLGEEGPTGNEWED 234

Query: 108 RKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINE 167
           RK+ RRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINE
Sbjct: 235 RKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIEGGKLMSSDINE 294

Query: 168 LYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 227
           LYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK
Sbjct: 295 LYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYK 354

Query: 228 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGL 287
           SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTF+IRGL
Sbjct: 355 SFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGL 414

Query: 288 IRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGR 347
           IRQH ASNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR
Sbjct: 415 IRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGR 474

Query: 348 AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQD 407
            ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQD
Sbjct: 475 TICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQD 534

Query: 408 MLIGLYVLTSGNRRGICANRYNPSNRKNHKNAKIYNNNYKYTKEPFFCNSYDAIGAYRQK 467
           MLIGLYVLTSG RRGICANRYNP NRKN++N +IY  NYKYTKEPFFCNSYDAIGAYRQK
Sbjct: 535 MLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYTKEPFFCNSYDAIGAYRQK 594

Query: 468 RINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKEILCIYIRT 527
           +INLDSPLWLRW+LDQRVIASRE PIEVHYES G +HEIY +YLIV+S+KKE  CIYIRT
Sbjct: 595 KINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYLIVRSVKKENFCIYIRT 654

Query: 528 TVGHISLYREIEEAIQGFCRACSYGT 554
           TVGHIS YREIEEAIQGF +ACSY T
Sbjct: 655 TVGHISFYREIEEAIQGFSQACSYDT 680

[Close]

BLAST of MELO3C000601.jh1 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 129.4 bits (324), Expect = 8.8e-30
Identity = 88/310 (28.39%), Postives = 142/310 (45.81%), Query Frame = 0


Query: 134 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 193
           P+WM+L +LP+ PP +RP + +D       D+      +I  N  L          P  +
Sbjct: 242 PDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--KRQEKNGAPAHI 301

Query: 194 VMCQEKLVQEAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 253
           +    +L+Q  + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+S
Sbjct: 302 ISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 361

Query: 254 GRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSK 313
            R+VI   P++++   G+P  IA+ L        +    ++ L+    H       AK  
Sbjct: 362 ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYI 421

Query: 314 IREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEG 373
           IR+                   + +++ + +  G  VL NR P+LH++ I   +  ++  
Sbjct: 422 IRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPY 481

Query: 374 RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQ 417
               L+  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    Q
Sbjct: 482 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 541

[Close]

BLAST of MELO3C000601.jh1 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0


Query: 134 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 193
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 194 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 253
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 369

Query: 254 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 313
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 370 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 429

Query: 314 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRA 373
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 430 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 489

Query: 374 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 417
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 490 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 549

[Close]

BLAST of MELO3C000601.jh1 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 124.8 bits (312), Expect = 2.2e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0


Query: 134 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 193
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 194 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 253
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 379

Query: 254 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 313
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 380 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 439

Query: 314 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRA 373
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 440 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 499

Query: 374 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 417
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 500 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 559

[Close]

BLAST of MELO3C000601.jh1 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 87.8 bits (216), Expect = 2.9e-17
Identity = 82/317 (25.87%), Postives = 139/317 (43.85%), Query Frame = 0


Query: 144 VLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQE 203
           V P + RP     G  +M         +VI  NN L +  T         V+ + + +QE
Sbjct: 348 VPPTKFRP-PTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQ--SKVIFRWRNLQE 407

Query: 204 AVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPS 263
           +V+ L D+     Q  RD           ++E KEG FR+ ++GKRV+++ RSVI   P 
Sbjct: 408 SVNVLFDSKTATVQSQRDS-----SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPY 467

Query: 264 LSLHRCGLPREIAIEL-------------FQTFLIRGLI----RQHFASNIGVAKSKIRE 323
           ++++  G+P   A++L              +  +I G        H++      K    E
Sbjct: 468 IAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTE 527

Query: 324 K--EPIVWEIL-----------------------QEVMQGHPVLLNRAPTLHRLGIQAFQ 383
           K    I  ++L                       + +  G  VL+NR PTLH+  + A +
Sbjct: 528 KARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHK 587

Query: 384 PILVEG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD 417
             +++G + + LH   C  +NADFDGD+M VH P    ++AEA  ++ ++      + G+
Sbjct: 588 VRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGE 647

The following BLAST results are available for this feature:

BLAST of MELO3C000601.jh1 vs. NCBI nr


Match Name	Identity	Description
ASY96794.1	100.00	RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym...	[more]
YP_009738192.1	99.80	RNA polymerase beta' subunit [Siraitia siamensis] >QIB71585.1 RNA polymerase bet...	[more]
AAZ94642.1	99.80	RNA polymerase beta I subunit [Cucumis sativus]	[more]
YP_009674382.1	99.80	RNA polymerase beta' subunit [Siraitia grosvenorii] >QDK59380.1 RNA polymerase b...	[more]
YP_009004035.1	99.80	RNA polymerase beta [Cucumis hystrix] >AHJ61377.1 RNA polymerase beta [Cucumis h...	[more]

BLAST of MELO3C000601.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	4.8e-299	99.80	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
B1A926	5.2e-285	94.47	DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3...	[more]
Q49L07	8.3e-283	93.50	DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus...	[more]
Q68S15	7.0e-282	94.08	DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3...	[more]
Q0ZJ29	2.9e-280	93.31	DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera OX=29760 GN=rpoC1 PE...	[more]

BLAST of MELO3C000601.jh1 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A249RZJ2	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A286NFS7	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. flexuosus OX=1120...	[more]
A0A249RYT3	100.00	DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. momordica OX=2034...	[more]
A0A218KG20	99.80	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A1X9Q1T5	99.80	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]

BLAST of MELO3C000601.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	2.8e-278	91.90	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	8.8e-30	28.39	RNA polymerase II large subunit	[more]
AT5G60040.1	2.2e-28	28.57	nuclear RNA polymerase C1	[more]
AT5G60040.2	2.2e-28	28.57	nuclear RNA polymerase C1	[more]
AT3G57660.1	2.9e-17	25.87	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 135..416 e-value: 2.9E-156 score: 535.1
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 125..244 e-value: 6.3E-32 score: 111.1
None	No IPR available	GENE3D	1.10.40.90		coord: 275..319 e-value: 3.1E-16 score: 61.2
None	No IPR available	GENE3D	2.40.40.20		coord: 234..387 e-value: 1.9E-46 score: 159.2
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 111..516
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 111..516
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 42..543
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 391..549 e-value: 1.7E-24 score: 89.0
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 302..386 e-value: 1.3E-26 score: 93.8 coord: 246..293 e-value: 3.4E-7 score: 30.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000601.jh1.t1	MELO3C000601.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity