MELO3C000540 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000540
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Chaperone protein dnaJ 6
Location	chr04: 29326338 .. 29327337 (+)
RNA-Seq Expression	MELO3C000540
Synteny	MELO3C000540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTGTTCTGCTCAATGCTTTGTTCAGATCCCAAGCTTGACTCACACCGGTTCAAGGACATTTTAGACGAGGCAATTACTGCTGGTGAGCATCCATCTTTCTTTTATAGGAATTACCTTGCTCCGTTTCTTGGATCTAGTCTAATGGAACTTGTCTTTTGAATTCAGCACTAGGGTTTATACTGAAATGAAAGTTTGATCATGTTCTGTTTCTCATAAAAAAGAAATTGATTATGTTACCTAATCTTAGATGTGATGGGTGCTAATCTGTCTTTTCATCCTTTTTGTTAGGCGAGCTAAAATCAACGAAGTCCTACGACAAATGGGCAAGGAAAATATCAGAAACGAAACCACCGACCAGTCCTTTGAGGAAGAGGGTGAAGTGAGTTTTCTCTGCATGTTTATTACTTTGATGAAGAAGATACACTAAGTTCTATATCAGCCAAATTTCGTTTTATATCAAAGCTTACCTAGTGCCTGGATTTTTATACAGATCTAATAAAGAGTCAGAAACAGATCTCTATGCCGTAATATCTCAAAGACGAAATGAGAGGAAAGAACGATTTGATTCCATGTTCTCGTCTTTAGTATCTAATATGGGGGAGGCGATGCCTCAGAACCGACCGAGGAAGAATTTGAAGCTGCCCAGAAGAAGTTAGAGGACCGAAAGTCCTCCAAAAAATCCAAGAGGAAGTAATTATCATCTTTGATAAAAAAAAATATGCTTGATCAATCGTCAGGGCAATGGTTTTCCATGATGATGTTTTTGCTTCATGAATGTACATGTCTCGGTTTGCTGTCTTCTTTATTTTCCCTGCTTAATCTTCCAGGAAGGTTTGCATTCAAAAGAATTGGAGAACAAATATTTTTTGGTTTGAAATCTAAGATATGGCTTTGACTCTTGAATTAAGGATCTTGGTCTCTTCCCACTGCTTGGAAGTGTTAGATATTATCCTTTTAGTATGAAAGATGTAATATCTTCAGAGGTTATCCTTAGTGTAG

mRNA sequence

GCTGTTCTGCTCAATGCTTTGTTCAGATCCCAAGCTTGACTCACACCGGTTCAAGGACATTTTAGACGAGGCAATTACTGCTGGCGAGCTAAAATCAACGAAGTCCTACGACAAATGGGCAAGGAAAATATCAGAAACGAAACCACCGACCAGTCCTTTGAGGAAGAGGGTGAAATCTAATAAAGAGTCAGAAACAGATCTCTATGCCGTAATATCTCAAAGACGAAATGAGAGGAAAGAACGATTTGATTCCATGTTCTCGTCTTTAGTATCTAATATGGGGGAGGCGATGCCTCAGAACCGACCGAGGAAGAATTTGAAGCTGCCCAGAAGAAGTTAGAGGACCGAAAGTCCTCCAAAAAATCCAAGAGGAAGTAATTATCATCTTTGATAAAAAAAAATATGCTTGATCAATCGTCAGGGCAATGGTTTTCCATGATGATGTTTTTGCTTCATGAATGTACATGTCTCGGTTTGCTGTCTTCTTTATTTTCCCTGCTTAATCTTCCAGGAAGGTTTGCATTCAAAAGAATTGGAGAACAAATATTTTTTGGTTTGAAATCTAAGATATGGCTTTGACTCTTGAATTAAGGATCTTGGTCTCTTCCCACTGCTTGGAAGTGTTAGATATTATCCTTTTAGTATGAAAGATGTAATATCTTCAGAGGTTATCCTTAGTGTAG

Coding sequence (CDS)

ATGCTTTGTTCAGATCCCAAGCTTGACTCACACCGGTTCAAGGACATTTTAGACGAGGCAATTACTGCTGGCGAGCTAAAATCAACGAAGTCCTACGACAAATGGGCAAGGAAAATATCAGAAACGAAACCACCGACCAGTCCTTTGAGGAAGAGGGTGAAATCTAATAAAGAGTCAGAAACAGATCTCTATGCCGTAATATCTCAAAGACGAAATGAGAGGAAAGAACGATTTGATTCCATGTTCTCGTCTTTAGTATCTAATATGGGGGAGGCGATGCCTCAGAACCGACCGAGGAAGAATTTGAAGCTGCCCAGAAGAAGTTAG

Protein sequence

MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDLYAVISQRRNERKERFDSMFSSLVSNMGEAMPQNRPRKNLKLPRRS

Homology

[Close]

BLAST of MELO3C000540 vs. NCBI nr
Match: KAA0043707.1 (chaperone protein dnaJ 6 [Cucumis melo var. makuwa] >TYK25427.1 chaperone protein dnaJ 6 [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-39
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE
Sbjct: 162 MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 221

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYAVISQRRNERKERFDSMFSSLVS  G
Sbjct: 222 TDLYAVISQRRNERKERFDSMFSSLVSKYG 251

[Close]

BLAST of MELO3C000540 vs. NCBI nr
Match: XP_004136585.1 (chaperone protein dnaJ 6 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 9.5e-39
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE
Sbjct: 162 MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 221

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYA+ISQRRNERK+RFDSMFSSLVS  G
Sbjct: 222 TDLYAIISQRRNERKDRFDSMFSSLVSKYG 251

[Close]

BLAST of MELO3C000540 vs. NCBI nr
Match: KAE8651146.1 (hypothetical protein Csa_002464 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 9.5e-39
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE
Sbjct: 438 MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 497

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYA+ISQRRNERK+RFDSMFSSLVS  G
Sbjct: 498 TDLYAIISQRRNERKDRFDSMFSSLVSKYG 527

[Close]

BLAST of MELO3C000540 vs. NCBI nr
Match: XP_008466951.1 (PREDICTED: chaperone protein dnaJ 6-like, partial [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-37
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 4  SDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDL 63
          SDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDL
Sbjct: 1  SDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDL 60

Query: 64 YAVISQRRNERKERFDSMFSSLVSNMG 91
          YAVISQRRNERKERFDSMFSSLVS  G
Sbjct: 61 YAVISQRRNERKERFDSMFSSLVSKYG 87

[Close]

BLAST of MELO3C000540 vs. NCBI nr
Match: XP_022154208.1 (chaperone protein dnaJ 6 [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 5.2e-37
Identity = 82/90 (91.11%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAI+AGELK+TK+Y+KWA+KISETKPPTSPLRKRVKSNKESE
Sbjct: 163 MLCSDPKLDSHRFKDILDEAISAGELKATKAYNKWAKKISETKPPTSPLRKRVKSNKESE 222

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYA+ISQRRNERKERFDSMFSSLVS  G
Sbjct: 223 TDLYAIISQRRNERKERFDSMFSSLVSKYG 252

[Close]

BLAST of MELO3C000540 vs. ExPASy Swiss-Prot
Match: Q9FL54 (Chaperone protein dnaJ 6 OS=Arabidopsis thaliana OX=3702 GN=ATJ6 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.1e-29
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSN---K 60
           MLCSDPKLDSHRFKD+LDEAI AGE+KS+K+Y+KWA KISETKPPTSPLRKR K     K
Sbjct: 160 MLCSDPKLDSHRFKDMLDEAIAAGEVKSSKAYEKWANKISETKPPTSPLRKRKKKKSAAK 219

Query: 61  ESETDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           +SETDL  +I++R+ ERK + DSMFSSL+S  G
Sbjct: 220 DSETDLCLMIAKRQEERKGKVDSMFSSLISRYG 252

[Close]

BLAST of MELO3C000540 vs. ExPASy TrEMBL
Match: A0A5D3DP67 (Chaperone protein dnaJ 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005700 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 88/90 (97.78%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE
Sbjct: 162 MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 221

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYAVISQRRNERKERFDSMFSSLVS  G
Sbjct: 222 TDLYAVISQRRNERKERFDSMFSSLVSKYG 251

[Close]

BLAST of MELO3C000540 vs. ExPASy TrEMBL
Match: A0A0A0LH06 (J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G810550 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE
Sbjct: 162 MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 221

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYA+ISQRRNERK+RFDSMFSSLVS  G
Sbjct: 222 TDLYAIISQRRNERKDRFDSMFSSLVSKYG 251

[Close]

BLAST of MELO3C000540 vs. ExPASy TrEMBL
Match: A0A1S3CSE3 (chaperone protein dnaJ 6-like OS=Cucumis melo OX=3656 GN=LOC103504339 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 4  SDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDL 63
          SDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDL
Sbjct: 1  SDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESETDL 60

Query: 64 YAVISQRRNERKERFDSMFSSLVSNMG 91
          YAVISQRRNERKERFDSMFSSLVS  G
Sbjct: 61 YAVISQRRNERKERFDSMFSSLVSKYG 87

[Close]

BLAST of MELO3C000540 vs. ExPASy TrEMBL
Match: A0A6J1DJN9 (chaperone protein dnaJ 6 OS=Momordica charantia OX=3673 GN=LOC111021522 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.5e-37
Identity = 82/90 (91.11%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDEAI+AGELK+TK+Y+KWA+KISETKPPTSPLRKRVKSNKESE
Sbjct: 163 MLCSDPKLDSHRFKDILDEAISAGELKATKAYNKWAKKISETKPPTSPLRKRVKSNKESE 222

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYA+ISQRRNERKERFDSMFSSLVS  G
Sbjct: 223 TDLYAIISQRRNERKERFDSMFSSLVSKYG 252

[Close]

BLAST of MELO3C000540 vs. ExPASy TrEMBL
Match: A0A6J1J118 (chaperone protein dnaJ 6-like OS=Cucurbita maxima OX=3661 GN=LOC111481714 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCSDPKLDSHRFKDILDE ITAGELK+TKSY KWARKISETKPPTSPLRKRVKS++ESE
Sbjct: 162 MLCSDPKLDSHRFKDILDEEITAGELKATKSYQKWARKISETKPPTSPLRKRVKSHRESE 221

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           TDLYAVISQRR+ERKERFDSMFSSLVS  G
Sbjct: 222 TDLYAVISQRRSERKERFDSMFSSLVSKYG 251

[Close]

BLAST of MELO3C000540 vs. TAIR 10
Match: AT5G06910.1 (J-domain protein 6 )

HSP 1 Score: 128.6 bits (322), Expect = 2.9e-30
Identity = 66/93 (70.97%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSN---K 60
           MLCSDPKLDSHRFKD+LDEAI AGE+KS+K+Y+KWA KISETKPPTSPLRKR K     K
Sbjct: 160 MLCSDPKLDSHRFKDMLDEAIAAGEVKSSKAYEKWANKISETKPPTSPLRKRKKKKSAAK 219

Query: 61  ESETDLYAVISQRRNERKERFDSMFSSLVSNMG 91
           +SETDL  +I++R+ ERK + DSMFSSL+S  G
Sbjct: 220 DSETDLCLMIAKRQEERKGKVDSMFSSLISRYG 252

[Close]

BLAST of MELO3C000540 vs. TAIR 10
Match: AT3G12170.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-29
Identity = 62/90 (68.89%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1   MLCSDPKLDSHRFKDILDEAITAGELKSTKSYDKWARKISETKPPTSPLRKRVKSNKESE 60
           MLCS+PKLDSHRFKDI+DEAI AGE+KSTK+Y KWA++I+E +PPT+P + R K+ K ++
Sbjct: 142 MLCSNPKLDSHRFKDIIDEAIAAGEVKSTKAYKKWAKEIAEMEPPTNPQKMRRKAAKAAD 201

Query: 61  TDLYAVISQRRNERKERFDSMFSSLVSNMG 91
            DLYAV+SQR +ERKE+FDSMFSSLVS  G
Sbjct: 202 KDLYAVMSQRGDERKEKFDSMFSSLVSRYG 231

The following BLAST results are available for this feature:

BLAST of MELO3C000540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043707.1	3.3e-39	97.78	chaperone protein dnaJ 6 [Cucumis melo var. makuwa] >TYK25427.1 chaperone protei...	[more]
XP_004136585.1	9.5e-39	95.56	chaperone protein dnaJ 6 [Cucumis sativus]	[more]
KAE8651146.1	9.5e-39	95.56	hypothetical protein Csa_002464 [Cucumis sativus]	[more]
XP_008466951.1	4.0e-37	97.70	PREDICTED: chaperone protein dnaJ 6-like, partial [Cucumis melo]	[more]
XP_022154208.1	5.2e-37	91.11	chaperone protein dnaJ 6 [Momordica charantia]	[more]

BLAST of MELO3C000540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL54	4.1e-29	70.97	Chaperone protein dnaJ 6 OS=Arabidopsis thaliana OX=3702 GN=ATJ6 PE=2 SV=1	[more]

BLAST of MELO3C000540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP67	1.6e-39	97.78	Chaperone protein dnaJ 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LH06	4.6e-39	95.56	J domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G810550 PE=4 SV=1	[more]
A0A1S3CSE3	1.9e-37	97.70	chaperone protein dnaJ 6-like OS=Cucumis melo OX=3656 GN=LOC103504339 PE=4 SV=1	[more]
A0A6J1DJN9	2.5e-37	91.11	chaperone protein dnaJ 6 OS=Momordica charantia OX=3673 GN=LOC111021522 PE=4 SV=...	[more]
A0A6J1J118	2.1e-36	91.11	chaperone protein dnaJ 6-like OS=Cucurbita maxima OX=3661 GN=LOC111481714 PE=4 S...	[more]

BLAST of MELO3C000540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06910.1	2.9e-30	70.97	J-domain protein 6	[more]
AT3G12170.1	1.1e-29	68.89	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042977	Chaperone protein AtJ6-like	PANTHER	PTHR44916	CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED	coord: 1..94
None	No IPR available	PANTHER	PTHR44916:SF3	CHAPERONE DNAJ DOMAIN PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000540.1	MELO3C000540.1	mRNA