Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAGGCCATCTTCAGCCGACCACGGCGCTTCTGCCGACTCACCGACGACCGTGGTTCCTCCCCCACCTACAGCCGACGCCCGACGAAGCATCTTCAGCGATGCCCATCTTCATCCGACGCCCATCTTCAGCCAAAGGCCATCTTCAGCCGACACCCACGTTCAGCGACCCCGACGAACACATTCAGCCGACGGCCGACCAGCTTCTGTTCCGACCAGACGAACACATTCAGCCAGCCCACGTTCAGCTTCCGCCGACACCCGCATACCCAACGTCAGCCAACGCCCGATGCCCTACACCCACCACGACCGACCCACCCACCACGGCCGACGCACCTAGTCCAGATTGCCGACGCCCGACGCACCCAGCCAGCCTTGATCCGCGCACTCAGCCGACGCACT AA mRNA sequence
CCAAAGGCCATCTTCAGCCGACCACGGCGCTTCTGCCGACTCACCGACGACCGTGGTTCCTCCCCCACCTACAGCCGACGCCCGACGAAGCATCTTCAGCGATGCCCATCTTCATCCGACGCCCATCTTCAGCCAAAGGCCATCTTCAGCCGACACCCACGTTCAGCGACCCCGACGAACACATTCAGCCGACGGCCGACCAGCTTCTGTTCCGACCAGACGAACACATTCAGCCAGCCCACGTTCAGCTTCCGCCGACACCCGCATACCCAACGTCAGCCAACGCCCGATGCCCTACACCCACCACGACCGACCCACCCACCACGGCCGACGCACCTAGTCCAGATTGCCGACGCCCGACGCACCCAGCCAGCCTTGATCCGCGCACTCAGCCGACGCACTAA Coding sequence (CDS)
CCAAAGGCCATCTTCAGCCGACCACGGCGCTTCTGCCGACTCACCGACGACCGTGGTTCCTCCCCCACCTACAGCCGACGCCCGACGAAGCATCTTCAGCGATGCCCATCTTCATCCGACGCCCATCTTCAGCCAAAGGCCATCTTCAGCCGACACCCACGTTCAGCGACCCCGACGAACACATTCAGCCGACGGCCGACCAGCTTCTGTTCCGACCAGACGAACACATTCAGCCAGCCCACGTTCAGCTTCCGCCGACACCCGCATACCCAACGTCAGCCAACGCCCGATGCCCTACACCCACCACGACCGACCCACCCACCACGGCCGACGCACCTAGTCCAGATTGCCGACGCCCGACGCACCCAGCCAGCCTTGATCCGCGCACTCAGCCGACGCACT Protein sequence
PKAIFSRPRRFCRLTDDRGSSPTYSRRPTKHLQRCPSSSDAHLQPKAIFSRHPRSATPTNTFSRRPTSFCSDQTNTFSQPTFSFRRHPHTQRQPTPDALHPPRPTHPPRPTHLVQIADARRTQPALIRALSRRT
Homology
BLAST of MELO3C000350 vs. NCBI nr
Match:
KAA0052809.1 (uncharacterized protein E6C27_scaffold1614G00250 [Cucumis melo var. makuwa])
HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 51/91 (56.04%), Postives = 57/91 (62.64%), Query Frame = 0
Query: 37 SSSDAHLQPKAIFSRHPRSATPTNTFSRRPTSFCSD-QTNTFS-QPTFSFRRHPHTQRQP 96 SS++AH+QP TPTNTFSR P S +D + TFS + T FRR PHTQ QP Sbjct: 6 SSAEAHVQP-----------TPTNTFSRGPHSADADARRTTFSRRSTKRFRRRPHTQLQP 65 Query: 97 TPDALHPPRPTHPPRPTHLVQIADARRTQPA 126 TPDALHPPR THPPRPTH R T PA Sbjct: 66 TPDALHPPRSTHPPRPTH-----PPRSTHPA 80
BLAST of MELO3C000350 vs. ExPASy TrEMBL
Match:
A0A5A7UH02 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1614G00250 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 51/91 (56.04%), Postives = 57/91 (62.64%), Query Frame = 0
Query: 37 SSSDAHLQPKAIFSRHPRSATPTNTFSRRPTSFCSD-QTNTFS-QPTFSFRRHPHTQRQP 96 SS++AH+QP TPTNTFSR P S +D + TFS + T FRR PHTQ QP Sbjct: 6 SSAEAHVQP-----------TPTNTFSRGPHSADADARRTTFSRRSTKRFRRRPHTQLQP 65 Query: 97 TPDALHPPRPTHPPRPTHLVQIADARRTQPA 126 TPDALHPPR THPPRPTH R T PA Sbjct: 66 TPDALHPPRSTHPPRPTH-----PPRSTHPA 80
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0052809.1 3.0e-10 56.04 uncharacterized protein E6C27_scaffold1614G00250 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7UH02 1.5e-10 56.04 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
C C A A A G G C C A T C T T C A G C C G A C C A C G G C G C T T C T G C C G A C T C A C C G A C G A C C G T G G T T C C T C C C C C A C C T A C A G C C G A C G C C C G A C G A A G C A T C T T C A G C G A T G C C C A T C T T C A T C C G A C G C C C A T C T T C A G C C A A A G G C C A T C T T C A G C C G A C A C C C A C G T T C A G C G A C C C C G A C G A A C A C A T T C A G C C G A C G G C C G A C C A G C T T C T G T T C C G A C C A G A C G A A C A C A T T C A G C C A G C C C A C G T T C A G C T T C C G C C G A C A C C C G C A T A C C C A A C G T C A G C C A A C G C C C G A T G C C C T A C A C C C A C C A C G A C C G A C C C A C C C A C C A C G G C C G A C G C A C C T A G T C C A G A T T G C C G A C G C C C G A C G C A C C C A G C C A G C C T T G A T C C G C G C A C T C A G C C G A C G C A C T A A 50 100 150 200 250 300 350 400 Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 18..44
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..111
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 53..89
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 95..109
Relationships
The following mRNA feature(s) are a part of this gene: