MELO3C000289 (gene) Melon (DHL92) v4

Overview
NameMELO3C000289
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr03: 6794808 .. 6795005 (-)
RNA-Seq ExpressionMELO3C000289
SyntenyMELO3C000289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGTGGCGGCGTTCAAAAGCCCGGTGAATATTCGGGACAGAGTGGGCTGCGGGAAAATGAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTTGTCGGAGATCATCCACAACCGCCGCAAACCCATTTCTGAAGATTTGTAA

mRNA sequence

CCTGTGGCGGCGTTCAAAAGCCCGGTGAATATTCGGGACAGAGTGGGCTGCGGGAAAATGAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTTGTCGGAGATCATCCACAACCGCCGCAAACCCATTTCTGAAGATTTGTAA

Coding sequence (CDS)

ATGAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTTGTCGGAGATCATCCACAACCGCCGCAAACCCATTTCTGAAGATTTGTAA

Protein sequence

MKSVIPKQRKLVKTMIYHSLKDFLISLFRPLSEIIHNRRKPISEDL
Homology
BLAST of MELO3C000289 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0

Query: 1  MKSVIPKQRKLVKTMIYHSLKDFLISLFRPLSEIIHNRRKPISED 46
          +KSVIPKQRKLVKTMIYHSLKDFLISLFRP S+ IHNR KPIS+D
Sbjct: 38 IKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSD-IHNRPKPISKD 81

BLAST of MELO3C000289 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 1   MKSVIPKQRKLVKTMIYHSLKDFLISLFRPLSEIIHNRRKPISED 46
           +KSVIPK+RKLVKTM+YH +KDFL SLFRP  +    R KPI  D
Sbjct: 88  VKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPKTHRRRPKPIIHD 132

BLAST of MELO3C000289 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1   MKSVIPKQRKLVKTMIYHSLKDFLISLFRPLSEIIHNRRKPISED 46
           +KSVIPK+RKLVKTM+YH +K+F+ SLFR   +  HNR KPI++D
Sbjct: 119 VKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPK-THNRPKPITDD 162

BLAST of MELO3C000289 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 2   KSVIPKQRKLVKTMIYHSLKDFLISLFRPLSEIIHNRRKPIS 44
           KSVIPK+RKLVKTM+YH +K+FL SLFR   E  HNR KPI+
Sbjct: 100 KSVIPKRRKLVKTMMYHCIKNFLKSLFRRPPE-THNRPKPIT 140

BLAST of MELO3C000289 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 1  MKSVIPKQRKLVKTMIYHSLKDFLISLFRPLSEIIHNRRKPISEDL 47
          +KSVIPKQRKLVKTMIYHSLKDFLISLFRP S+ IHNR KPIS+DL
Sbjct: 38 IKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSD-IHNRPKPISKDL 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647260.11.8e-1086.67hypothetical protein Csa_018328, partial [Cucumis sativus][more]
KAG6602134.12.9e-0564.44hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.11.4e-0462.22hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602132.13.2e-0469.05hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ72.9e-1186.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C000289.1MELO3C000289.1mRNA