MELO3C000217 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000217
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cleavage and polyadenylation specificity factor subunit 6
Location	chr01: 10551422 .. 10552635 (+)
RNA-Seq Expression	MELO3C000217
Synteny	MELO3C000217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCCGCAACAGCCACAGCTGCAGCCGCAGCCACAGCCGCAGCACCATCACCAGCCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTCTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTCGGTGGAAATGGGTTCGGTAATGTAGGGAGTGCAGGGGGAGGTAGCGGTGGAACAATTTTGTTTGTTGGTGATTTGCATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAATTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGACATATTTTTAATGGACGTCCATGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAGATGGGAGAAGCCCAAGTTAACAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGTAATTGGGGAAGGGGTAATGCTCATGGGATGGGTGGTCGAGGACCAGCTGGTCCAATGAGGGGCAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGTGGGAGAGCTGGCGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGGGAAGGCAGTCATGAAAGAGGGCCTTGGGCAAATTCTGCAAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAG

mRNA sequence

GCTCCGCAACAGCCACAGCTGCAGCCGCAGCCACAGCCGCAGCACCATCACCAGCCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTCTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTCGGTGGAAATGGGTTCGGTAATGTAGGGAGTGCAGGGGGAGGTAGCGGTGGAACAATTTTGTTTGTTGGTGATTTGCATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAATTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGACATATTTTTAATGGACGTCCATGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAGATGGGAGAAGCCCAAGTTAACAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGACCAGCTGGTCCAATGAGGGGCAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGTGGGAGAGCTGGCGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGGGAAGGCAGTCATGAAAGAGGGCCTTGGGCAAATTCTGCAAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGAAG

Coding sequence (CDS)

GCTCCGCAACAGCCACAGCTGCAGCCGCAGCCACAGCCGCAGCACCATCACCAGCCACCTCAGAGCGGAGTCTTAGGAAATCCTGGGAGTGTAGAAAATGAAGGTCTGCTAAGGCAAGGTGGTGGAGTTAATGTCAATGGGGTCGGTGGAAATGGGTTCGGTAATGTAGGGAGTGCAGGGGGAGGTAGCGGTGGAACAATTTTGTTTGTTGGTGATTTGCATTGGTGGACTACAGATGCGGAGCTTGAGGTGGAACTCTGTAAGTATGGTCCGTTGAAGGAGGTCAAGTTTTATGACGAGAAAGCCAGTGGAAAATCAAAAGGCTACTGCCAGGTTGAATTTTATGATCCTTCTGCTGCCACAGCTTGCAAGGAGGGAATGAATGGACATATTTTTAATGGACGTCCATGTGTAGTTGCATATGCATCACCGTTTAGTGTTAAGAAGATGGGAGAAGCCCAAGTTAACAGGAACCAACAGATAGCCCAAGCTACTAATCCTCAAGCAAGGAGAGCTCCTAATGATGCTGTAGGTAAAATTGGTGGAAGTAGTATTGCAACGGGTGGTAACTATCAAGGTGGTGATAACAATAGAGGTTCTGGGAGAGGACCAGCTGGTCCAATGAGGGGCAGGGGTGGTGGGATGGGTGGCAGAGGTATAATGGGAAATGGTGGAAATGGATTTGGCCAAGGAATTGGTGCTACCCCTCCTTTATTGCATCCGCAGTCAATGATGGGTCAAGGTTTTGATCCATCTTTTGGTGCACCCATGGGAAGAATGGGTACATATGGTGGTTTTCCTGGAGCTCCGGCTCCCCCTTTCTCTGGAATTTTGTCATCCTTTCCTCCTGTCGGGGGTGTTGGCCTTCCTGGTGTAGCTCCTCATGTGAACCCAGCATTTTTTGGAAGAGGTATGCCTATGAATGGAATGGGGATGATGCCAACATCGGGTGTTGATGGGCCTAATATGGGAATGTGGTCTGATCCTAGTATGGGTGGATGGGGCAGTGAAGAGCAAGGTGGTGGGAGAGCTGGCGAGTCTAGTTATGGAGAAGAAGCTGGTTCTGACCAGCATTATGGGGAAGGCAGTCATGAAAGAGGGCCTTGGGCAAATTCTGCAAAGGAGAAAGATAGAGGCTCTGAAAGGGACTGGTCACAGTCTTCTGATAGA

Protein sequence

APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAGGGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATGGNYQGGDNNRGSGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR

Homology

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BLAST of MELO3C000217 vs. NCBI nr
Match: XP_008467018.1 (PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit CG7185-like, partial [Cucumis melo])

HSP 1 Score: 754.2 bits (1946), Expect = 5.5e-214
Identity = 388/404 (96.04%), Postives = 390/404 (96.53%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG
Sbjct: 7   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 66

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GGSGGT+LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA
Sbjct: 67  GGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 126

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI
Sbjct: 127 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 186

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GGSSIATGGNYQGGDNNRGS              GRGPAGPMRGRGGG+GGRGIMGNGGN
Sbjct: 187 GGSSIATGGNYQGGDNNRGSGRGNWGRGNAMGMGGRGPAGPMRGRGGGIGGRGIMGNGGN 246

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 247 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 306

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 307 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 366

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 367 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 410

[Close]

BLAST of MELO3C000217 vs. NCBI nr
Match: TYK07956.1 (cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 752.7 bits (1942), Expect = 1.6e-213
Identity = 387/404 (95.79%), Postives = 390/404 (96.53%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG
Sbjct: 171 APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 230

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GGSGGT+LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA
Sbjct: 231 GGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 290

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI
Sbjct: 291 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 350

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GGSSIATGGNYQGGDNNRGS              GRGPAGPMRGRGGG+GGRGIMGNGGN
Sbjct: 351 GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGIMGNGGN 410

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 411 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSSFPPVGG 470

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 471 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 530

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 531 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 574

[Close]

BLAST of MELO3C000217 vs. NCBI nr
Match: TYK07958.1 (putative PE-PGRS family protein PE_PGRS54 [Cucumis melo var. makuwa])

HSP 1 Score: 752.3 bits (1941), Expect = 2.1e-213
Identity = 388/404 (96.04%), Postives = 388/404 (96.04%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           APQQPQLQPQPQPQHHHQPPQSGVLGNPG VENEGLLRQGGGVNVNGVGGNGFGNVGSAG
Sbjct: 99  APQQPQLQPQPQPQHHHQPPQSGVLGNPGGVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 158

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA
Sbjct: 159 GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 218

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI
Sbjct: 219 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 278

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GGSSIATGGNYQGGDNNRGS              GRGPAGPMRGRGGGMGGRGIMGNGGN
Sbjct: 279 GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGMGGRGIMGNGGN 338

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 339 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 398

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 399 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 458

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDR SERDWSQSSDR
Sbjct: 459 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRASERDWSQSSDR 502

[Close]

BLAST of MELO3C000217 vs. NCBI nr
Match: XP_031744545.1 (cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >XP_031744546.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645915.1 hypothetical protein Csa_011894 [Cucumis sativus])

HSP 1 Score: 738.8 bits (1906), Expect = 2.4e-209
Identity = 380/401 (94.76%), Postives = 384/401 (95.76%), Query Frame = 0


Query: 4   QPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAGGGS 63
           QPQ QPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN+GSAGGG 
Sbjct: 182 QPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNIGSAGGGG 241

Query: 64  GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATAC 123
           GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATAC
Sbjct: 242 GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATAC 301

Query: 124 KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGS 183
           KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQV+RNQQIAQATNPQARRAPN+AVGKIGG+
Sbjct: 302 KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGGN 361

Query: 184 SIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGNGFG 243
           SIATGGNYQGGDNNRGS              GRGPAG MRGRGGGMGGRGIMGNGGNGFG
Sbjct: 362 SIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGRGIMGNGGNGFG 421

Query: 244 QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL 303
           QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL
Sbjct: 422 QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL 481

Query: 304 PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY 363
           PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY
Sbjct: 482 PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY 541

Query: 364 GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 542 GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 582

[Close]

BLAST of MELO3C000217 vs. NCBI nr
Match: XP_031744552.1 (cleavage and polyadenylation specificity factor subunit CG7185 [Cucumis sativus] >XP_031744554.1 cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sativus] >KAE8645917.1 hypothetical protein Csa_011892 [Cucumis sativus])

HSP 1 Score: 736.5 bits (1900), Expect = 1.2e-208
Identity = 379/401 (94.51%), Postives = 383/401 (95.51%), Query Frame = 0


Query: 4   QPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAGGGS 63
           QPQ QPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGF N+GSAGGG 
Sbjct: 198 QPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFANIGSAGGGG 257

Query: 64  GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATAC 123
           GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYD SAATAC
Sbjct: 258 GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAATAC 317

Query: 124 KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGS 183
           KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQV+RNQQIAQATNPQARRAPN+AVGKIGG+
Sbjct: 318 KEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKIGGN 377

Query: 184 SIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGNGFG 243
           SIATGGNYQGGDNNRGS              GRGPAGPMRGRGGGMGGRGIMGNGGNGFG
Sbjct: 378 SIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGPMRGRGGGMGGRGIMGNGGNGFG 437

Query: 244 QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL 303
           QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL
Sbjct: 438 QGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGL 497

Query: 304 PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY 363
           PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY
Sbjct: 498 PGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSY 557

Query: 364 GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 558 GEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 598

[Close]

BLAST of MELO3C000217 vs. ExPASy Swiss-Prot
Match: Q9VSH4 (Cleavage and polyadenylation specificity factor subunit 6 OS=Drosophila melanogaster OX=7227 GN=Cpsf6 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-07
Identity = 107/361 (29.64%), Postives = 139/361 (38.50%), Query Frame = 0


Query: 40  GGGVNVNGVGGNGFGNVGSAGGG--------SGGTI---------LFVGDLHWWTTDAEL 99
           GG  + +G  G G G  G    G        S G++         L+VG+L WWTTD ++
Sbjct: 50  GGTPSADGAAGPGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDI 109

Query: 100 EVELCKYG--PLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMNGHIFNGRPCVVA 159
              L   G   L+EVKF++ +A+G+SKG+  +     S+  A  + +     +G+  VV 
Sbjct: 110 ANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVT 169

Query: 160 YASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATG--GNYQGG---- 219
           Y S  ++ +    Q  R     Q   P    AP      +GG  + TG  G  QGG    
Sbjct: 170 YPSKQALTQFESLQKTRPVPPPQQNGPPRGPAP----PSMGGGPMPTGHPGGPQGGGPPG 229

Query: 220 -----------------------DNNRGSGRGP---AGPMRGRGGGMGGRGIMGNGGNGF 279
                                      G   GP     PM  +GG MG +       +  
Sbjct: 230 HPPRGMNSIMQPGQYRPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQ 289

Query: 280 GQGIGATPPLLHPQSMMGQGFDPSF-GAPMG------------RMGTYGGFPGAPAPPFS 333
           GQ  G  P    P    G    P F G PMG            R   +GGFP  P  P  
Sbjct: 290 GQWPGQRPGGPRPGPPNGPPQRPMFQGGPMGMPVRGPAGPDWRRPPMHGGFP--PQGPPR 349

[Close]

BLAST of MELO3C000217 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.5e-07
Identity = 51/163 (31.29%), Postives = 68/163 (41.72%), Query Frame = 0


Query: 69  FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMN 128
           FVG L W T +  LE    ++G L + K  +++ +G+S+G+  V F D  +     EGMN
Sbjct: 11  FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 129 GHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATG 188
           G   +GR   V  A                         Q+R +     G+ GG     G
Sbjct: 71  GQDLDGRSITVNEA-------------------------QSRGSGAGGGGRGGGGGYRGG 130

Query: 189 GNYQGGDNNRGSGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQG 232
           G Y GG    G GR   G   G GGG   R   G GG G+G G
Sbjct: 131 GGYGGGGGGYGGGRREGGGYSGGGGGYSSR---GGGGGGYGGG 145

[Close]

BLAST of MELO3C000217 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-06
Identity = 51/163 (31.29%), Postives = 68/163 (41.72%), Query Frame = 0


Query: 69  FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMN 128
           FVG L W T D  LE    +YG + + K  +++ +G+S+G+  V F D  +     EGMN
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 129 GHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATG 188
           G   +GR   V  A                         Q+R +     G+ GG    +G
Sbjct: 71  GQDLDGRSITVNEA-------------------------QSRGSGGGGGGRGGGGGYRSG 130

Query: 189 GNYQGGDNNRGSGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQG 232
           G   GG    G G G  G   G  GG GG    G GG G+G G
Sbjct: 131 GG--GGYGGGGGGYGGGGREGGYSGGGGGYSSRGGGGGGYGGG 146

[Close]

BLAST of MELO3C000217 vs. ExPASy Swiss-Prot
Match: Q5ZL34 (Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=9031 GN=CPSF6 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-04
Identity = 79/300 (26.33%), Postives = 115/300 (38.33%), Query Frame = 0


Query: 68  LFVGDLHWWTTDAELEVELCKYG--PLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKE 127
           L++G+L WWTTD +L   +   G   + E+KF++ +A+G+SKG+  V     +++    +
Sbjct: 83  LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 142

Query: 128 GMNGHIFNGR-----PCVVAYASPFSVKK---------MGEAQVNRNQQIAQATNPQARR 187
            +     +G+     PC   + S F ++           GE +       ++A  P + R
Sbjct: 143 LLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPPSNR 202

Query: 188 APNDAVGKIGGSSIATGGNYQGGDNNRGS--------GRGPAGPMRGRGGGMGGRGIMGN 247
                 G I G     G    GG  +R            GP GP    G    G+ +   
Sbjct: 203 GRGRFPGAIPGGDRFPGPAGPGGPPHRSQLDKLPTRPPLGPPGPPGPPGPPPPGQVLPPP 262

Query: 248 GGNGFGQGIGATPPLLHPQSMMGQ---------------GFDPSFGAPMGRMG---TYGG 307
                 +G    PP+L P    GQ               G+ P  G P  + G     G 
Sbjct: 263 LAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322

Query: 308 FPGAPAPPFSGILSSFPPV----GGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGP 322
           FP  P  P    L+  PP        G P  APHVNPAFF    P      +PTS   GP
Sbjct: 323 FPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFF----PPPANSGIPTSDSRGP 378

[Close]

BLAST of MELO3C000217 vs. ExPASy Swiss-Prot
Match: Q16630 (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens OX=9606 GN=CPSF6 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 2.6e-04
Identity = 82/300 (27.33%), Postives = 116/300 (38.67%), Query Frame = 0


Query: 68  LFVGDLHWWTTDAELEVELCKYG--PLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKE 127
           L++G+L WWTTD +L   +   G   + E+KF++ +A+G+SKG+  V     +++    +
Sbjct: 83  LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 142

Query: 128 GMNGHIFNGR-----PCVVAYASPFSVKK---------MGEAQVNRNQQIAQATNPQARR 187
            +     +G+     PC   + S F ++           GE +       ++A  PQ  R
Sbjct: 143 LLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGR 202

Query: 188 APNDAVGKIGGSSIATGGNYQGGDNNR-GSGRGPAGPMRGRGGGMGGRGIMGNG------ 247
                 G + G     G    GG      +G+ P  P  G  G  G  G    G      
Sbjct: 203 GRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPP 262

Query: 248 -GNGFGQGIGATPPLLHPQSMMGQ---------------GFDPSFGAPMGRMG---TYGG 307
                 +G    PP+L P    GQ               G+ P  G P  + G     G 
Sbjct: 263 LAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322

Query: 308 FPGAPAPPFSGILSSFPPV----GGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGP 322
           FP  P  P    L+  PP        G P  APHVNPAFF    P    G MPTS   GP
Sbjct: 323 FPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFF---PPPTNSG-MPTSDSRGP 378

[Close]

BLAST of MELO3C000217 vs. ExPASy TrEMBL
Match: A0A1S3CSQ1 (LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucumis melo OX=3656 GN=LOC103504436 PE=4 SV=1)

HSP 1 Score: 754.2 bits (1946), Expect = 2.7e-214
Identity = 388/404 (96.04%), Postives = 390/404 (96.53%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG
Sbjct: 7   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 66

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GGSGGT+LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA
Sbjct: 67  GGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 126

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI
Sbjct: 127 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 186

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GGSSIATGGNYQGGDNNRGS              GRGPAGPMRGRGGG+GGRGIMGNGGN
Sbjct: 187 GGSSIATGGNYQGGDNNRGSGRGNWGRGNAMGMGGRGPAGPMRGRGGGIGGRGIMGNGGN 246

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 247 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 306

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 307 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 366

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 367 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 410

[Close]

BLAST of MELO3C000217 vs. ExPASy TrEMBL
Match: A0A5D3CC60 (Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00770 PE=4 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 7.8e-214
Identity = 387/404 (95.79%), Postives = 390/404 (96.53%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG
Sbjct: 171 APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 230

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GGSGGT+LFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA
Sbjct: 231 GGSGGTVLFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 290

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI
Sbjct: 291 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 350

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GGSSIATGGNYQGGDNNRGS              GRGPAGPMRGRGGG+GGRGIMGNGGN
Sbjct: 351 GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGIGGRGIMGNGGN 410

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAP+GRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 411 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPIGRMGTYGGFPGAPAPPFSGILSSFPPVGG 470

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 471 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 530

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 531 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 574

[Close]

BLAST of MELO3C000217 vs. ExPASy TrEMBL
Match: A0A5D3C9W4 (Putative PE-PGRS family protein PE_PGRS54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00790 PE=4 SV=1)

HSP 1 Score: 752.3 bits (1941), Expect = 1.0e-213
Identity = 388/404 (96.04%), Postives = 388/404 (96.04%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           APQQPQLQPQPQPQHHHQPPQSGVLGNPG VENEGLLRQGGGVNVNGVGGNGFGNVGSAG
Sbjct: 99  APQQPQLQPQPQPQHHHQPPQSGVLGNPGGVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 158

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA
Sbjct: 159 GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 218

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI
Sbjct: 219 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 278

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GGSSIATGGNYQGGDNNRGS              GRGPAGPMRGRGGGMGGRGIMGNGGN
Sbjct: 279 GGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRGRGGGMGGRGIMGNGGN 338

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 339 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 398

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 399 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 458

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDR SERDWSQSSDR
Sbjct: 459 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRASERDWSQSSDR 502

[Close]

BLAST of MELO3C000217 vs. ExPASy TrEMBL
Match: A0A0A0K3G6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV=1)

HSP 1 Score: 738.4 bits (1905), Expect = 1.5e-209
Identity = 381/404 (94.31%), Postives = 385/404 (95.30%), Query Frame = 0


Query: 1   APQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSAG 60
           AP QPQ QPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGN+GSAG
Sbjct: 171 APPQPQPQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNIGSAG 230

Query: 61  GGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAA 120
           GG GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYD SAA
Sbjct: 231 GGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDSSAA 290

Query: 121 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKI 180
           TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQV+RNQQIAQATNPQARRAPN+AVGKI
Sbjct: 291 TACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVSRNQQIAQATNPQARRAPNEAVGKI 350

Query: 181 GGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGNGGN 240
           GG+SIATGGNYQGGDNNRGS              GRGPAG MRGRGGGMGGRGIMGNGGN
Sbjct: 351 GGNSIATGGNYQGGDNNRGSGRGNWGRSNAHGMGGRGPAGQMRGRGGGMGGRGIMGNGGN 410

Query: 241 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 300
           GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG
Sbjct: 411 GFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGG 470

Query: 301 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 360
           VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE
Sbjct: 471 VGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGE 530

Query: 361 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR
Sbjct: 531 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 574

[Close]

BLAST of MELO3C000217 vs. ExPASy TrEMBL
Match: A0A6J1F726 (cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita moschata OX=3662 GN=LOC111442737 PE=4 SV=1)

HSP 1 Score: 702.6 bits (1812), Expect = 9.3e-199
Identity = 367/407 (90.17%), Postives = 374/407 (91.89%), Query Frame = 0


Query: 2   PQQPQLQPQPQPQHHHQPPQSGVLGNPGSVENEGLLRQGGGVNVNGVGGNGFGNVGSA-- 61
           P QPQ QPQ Q QHHHQ  Q GVLGNP SVENEGLLRQGGGVNVNGVGGNGFGNVG+A  
Sbjct: 185 PAQPQPQPQQQTQHHHQAQQGGVLGNPVSVENEGLLRQGGGVNVNGVGGNGFGNVGNAGG 244

Query: 62  --GGGSGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDP 121
             GGG GGTILFVGDLHWWTTDAELEVELCKYGPLKEVKF+DEKASGKSKGYCQVEFYDP
Sbjct: 245 GGGGGGGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFFDEKASGKSKGYCQVEFYDP 304

Query: 122 SAATACKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAV 181
           SAATACKEGMNGH+FNGRPCVVAYASPFSVK+MGEAQVNRNQQ+AQATNPQARR PND V
Sbjct: 305 SAATACKEGMNGHMFNGRPCVVAYASPFSVKRMGEAQVNRNQQMAQATNPQARRGPNDTV 364

Query: 182 GKIGGSSIATGGNYQGGDNNRGS--------------GRGPAGPMRGRGGGMGGRGIMGN 241
           GK+GGSSIATGGNYQGGDNNRGS              GRGPAGPMR RGGGMGGRGIMGN
Sbjct: 365 GKMGGSSIATGGNYQGGDNNRGSGRGNWGRGNAHGMGGRGPAGPMRNRGGGMGGRGIMGN 424

Query: 242 GGNGFGQGIGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPP 301
           GGNGFGQG+GATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPP
Sbjct: 425 GGNGFGQGMGATPPLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPP 484

Query: 302 VGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGR 361
           VGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEE GGGR
Sbjct: 485 VGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEHGGGR 544

Query: 362 AGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
           AGESSYGEEAGSDQ YGEGSHERG WANSAKEKDRGSERDWSQSSDR
Sbjct: 545 AGESSYGEEAGSDQQYGEGSHERGAWANSAKEKDRGSERDWSQSSDR 591

[Close]

BLAST of MELO3C000217 vs. TAIR 10
Match: AT5G55670.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 423.7 bits (1088), Expect = 1.6e-118
Identity = 257/410 (62.68%), Postives = 289/410 (70.49%), Query Frame = 0


Query: 20  PQSGVLGNPGSVENEGLLR-----------QGGGVNVNGVGGN----GFGNVGSAGGGSG 79
           P   VLGN     NE L+R            G G N+ G G N    G    G+ GGG G
Sbjct: 178 PPPPVLGN-----NENLMRPVMGNVNGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGG 237

Query: 80  GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 139
           G  LFVGDLHWWTTDAELE ELCKYG +KEVKF+DEKASGKSKGYCQVEFYDP AA+ACK
Sbjct: 238 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 297

Query: 140 EGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRA--------PNDA 199
           + +NG+ FNGRPCVV YASP+SVK+MGEAQVNR QQ AQ+   QA+R         P  A
Sbjct: 298 DALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQ-AQSVIAQAKRGGPADPPSKPLVA 357

Query: 200 VGKIGGSSIATGGNYQGGDN--------NRGS-----GRGPAGPMRGRGGGMGGRGIMGN 259
                 ++ A GGN+QGG+N         RG+     GRGP GPMR R  GMGGRG+MGN
Sbjct: 358 NNNNNNNNNAIGGNFQGGENRGFGRGNWGRGNAQGMGGRGPGGPMRNRPNGMGGRGLMGN 417

Query: 260 GGNGFGQGIGATPPL-LHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFP 319
           G  GFGQG+G  PP+ +  Q MMGQGF+ +FG PM RMG YGGFPGAP P F G+LSSFP
Sbjct: 418 G--GFGQGMGTGPPMNMMHQPMMGQGFEQAFGGPMARMGGYGGFPGAPGPQFPGLLSSFP 477

Query: 320 PVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVD-GPNMGMWSDPSMGGWGS-EEQG 379
           PVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMP +GVD G NMGMW DP+ GGWG+ E+ G
Sbjct: 478 PVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPNAGVDGGHNMGMW-DPNSGGWGAGEDLG 537

Query: 380 GGRAGESSYGEEAGSDQHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
            GRA ESSYGEEA SD  YGE +HERG   N  KEK+R SER+WS SSDR
Sbjct: 538 SGRAAESSYGEEAASDHQYGEVNHERGARPNPVKEKERASEREWSGSSDR 578

[Close]

BLAST of MELO3C000217 vs. TAIR 10
Match: AT1G13190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-56
Identity = 155/343 (45.19%), Postives = 198/343 (57.73%), Query Frame = 0


Query: 63  SGGTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATA 122
           +G T+LFVG+LHWWTTDAE+E  L +YG +KE+KF+DE+ SGKSKGYCQVEFYD +AA A
Sbjct: 199 NGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAA 258

Query: 123 CKEGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGG 182
           CKEGMNG IFNG+ CVVA+ASP ++K+MG     RNQ   Q  N   RR  N+ +G+  G
Sbjct: 259 CKEGMNGFIFNGKACVVAFASPETLKQMGANFTGRNQGQNQIQN---RRPLNEGMGR--G 318

Query: 183 SSIATGGNYQGGDNNRGSGRG---PAGPMRGRGGGMGGRGIMGNGGNGFGQGIGATP--- 242
           ++     N Q GD  R  GRG     G   G  GG  G  + G G N    G GA P   
Sbjct: 319 NNNNNNMNTQNGDGGRNYGRGGFARGGQGMGNRGGAWGGAMRGRGVNNMASGSGAGPYGP 378

Query: 243 --------PLLHPQSMMGQ-GFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGV 302
                    ++HPQ MMG  GFDP+F   MGR   YGG+ G   P   G+  S+P V  +
Sbjct: 379 GLAGPAFGGMMHPQGMMGAGGFDPTF---MGRGAGYGGYSGIAYP---GMPHSYPGVNAM 438

Query: 303 GLPGVAPHVNPAFFGRGMPMNGMGMMPTSGVDGPN-MGMWSDPSMGGWGSEEQGGGRAGE 362
           G+ G+APHVNPAFFG      GMG M +SG++G +   MWS+ +         GGG  G 
Sbjct: 439 GMVGIAPHVNPAFFG-----TGMGTMGSSGMNGVHAAAMWSEAN--------GGGGEEGG 498

Query: 363 SSYGEEAGSDQHYGEGSHERGPWANSAKEKDRG-SERDWSQSS 389
           S YG      Q   E           +++K+R  +ERDWS++S
Sbjct: 499 SEYGGYEDETQEKEE---------KPSRDKERATTERDWSENS 508

[Close]

BLAST of MELO3C000217 vs. TAIR 10
Match: AT5G55670.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-54
Identity = 172/394 (43.65%), Postives = 192/394 (48.73%), Query Frame = 0


Query: 20  PQSGVLGNPGSVENEGLLR-----------QGGGVNVNGVGGN----GFGNVGSAGGGSG 79
           P   VLGN     NE L+R            G G N+ G G N    G    G+ GGG G
Sbjct: 178 PPPPVLGN-----NENLMRPVMGNVNGGIPPGPGSNMVGNGANIAMPGVVGGGTGGGGGG 237

Query: 80  GTILFVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACK 139
           G  LFVGDLHWWTTDAELE ELCKYG +KEVKF+DEKASGKSKGYCQVEFYDP AA+ACK
Sbjct: 238 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 297

Query: 140 EGMNGHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRA--------PNDA 199
           + +NG+ FNGRPCVV YASP+SVK+MGEAQVNR QQ AQ+   QA+R         P  A
Sbjct: 298 DALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQ-AQSVIAQAKRGGPADPPSKPLVA 357

Query: 200 VGKIGGSSIATGGNYQGGDNNRGSGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQGIGATP 259
                 ++ A GGN+QGG+ NRG GRG  G  RG   GMGGRG                 
Sbjct: 358 NNNNNNNNNAIGGNFQGGE-NRGFGRGNWG--RGNAQGMGGRG----------------- 417

Query: 260 PLLHPQSMMGQGFDPSFGAPMGRMGTYGGFPGAPAPPFSGILSSFPPVGGVGLPGVAPHV 319
                                         PG P                          
Sbjct: 418 ------------------------------PGGPM------------------------- 453

Query: 320 NPAFFGRGMPMNGMGMMPTSGVDGPNMGMWSDPSMGGWGSEEQGGGRAGESSYGEEAGSD 379
                 R  P NGM                              GGRA ESSYGEEA SD
Sbjct: 478 ------RNRP-NGM------------------------------GGRAAESSYGEEAASD 453

Query: 380 QHYGEGSHERGPWANSAKEKDRGSERDWSQSSDR 391
             YGE +HERG   N  KEK+R SER+WS SSDR
Sbjct: 538 HQYGEVNHERGARPNPVKEKERASEREWSGSSDR 453

[Close]

BLAST of MELO3C000217 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-06
Identity = 58/198 (29.29%), Postives = 76/198 (38.38%), Query Frame = 0


Query: 69  FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMN 128
           FVG L W T D  LE    +YG + + K  +++ +G+S+G+  V F D  A     EGMN
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 129 GHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATG 188
           G   +GR   V  A     +  G    +R                    G  GG     G
Sbjct: 71  GQDLDGRSITVNEAQS---RGSGGGGGHRG-------------------GGGGGYRSGGG 130

Query: 189 GNYQGGDNNRGSGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMGQG 248
           G Y GG  + G G G      G  GG GG    G GG  +G G          +   G G
Sbjct: 131 GGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGG----------RREGGGG 176

Query: 249 FDPSFGAPMGRMGTYGGF 267
           +    G   G  G  GG+
Sbjct: 191 YGGGEGGGYGGSGGGGGW 176

[Close]

BLAST of MELO3C000217 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 50.4 bits (119), Expect = 3.7e-06
Identity = 50/165 (30.30%), Postives = 63/165 (38.18%), Query Frame = 0


Query: 69  FVGDLHWWTTDAELEVELCKYGPLKEVKFYDEKASGKSKGYCQVEFYDPSAATACKEGMN 128
           FVG L W T D  LE    +YG + + K  +++ +G+S+G+  V F D  A     EGMN
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 129 GHIFNGRPCVVAYASPFSVKKMGEAQVNRNQQIAQATNPQARRAPNDAVGKIGGSSIATG 188
           G   +GR   V                          N    R      G  GG S   G
Sbjct: 71  GQDLDGRSITV--------------------------NEAQSRGSGGGGGHRGGGSYGGG 130

Query: 189 GNYQGGDNNRGSGRGPAGPMRGRGGGMGGRGIMGNGGNGFGQGIG 234
           G  + G      G G      G GG  GG    G GG G G+G G
Sbjct: 131 GGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGG 149

The following BLAST results are available for this feature:

BLAST of MELO3C000217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467018.1	5.5e-214	96.04	PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor ...	[more]
TYK07956.1	1.6e-213	95.79	cleavage and polyadenylation specificity factor subunit 6 [Cucumis melo var. mak...	[more]
TYK07958.1	2.1e-213	96.04	putative PE-PGRS family protein PE_PGRS54 [Cucumis melo var. makuwa]	[more]
XP_031744545.1	2.4e-209	94.76	cleavage and polyadenylation specificity factor subunit CG7185-like [Cucumis sat...	[more]
XP_031744552.1	1.2e-208	94.51	cleavage and polyadenylation specificity factor subunit CG7185 [Cucumis sativus]...	[more]

BLAST of MELO3C000217 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VSH4	5.5e-07	29.64	Cleavage and polyadenylation specificity factor subunit 6 OS=Drosophila melanoga...	[more]
P49311	5.5e-07	31.29	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
P49310	3.6e-06	31.29	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q5ZL34	1.2e-04	26.33	Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus gallus OX=90...	[more]
Q16630	2.6e-04	27.33	Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens OX=960...	[more]

BLAST of MELO3C000217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CSQ1	2.7e-214	96.04	LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit CG7...	[more]
A0A5D3CC60	7.8e-214	95.79	Cleavage and polyadenylation specificity factor subunit 6 OS=Cucumis melo var. m...	[more]
A0A5D3C9W4	1.0e-213	96.04	Putative PE-PGRS family protein PE_PGRS54 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0K3G6	1.5e-209	94.31	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G104800 PE=4 SV...	[more]
A0A6J1F726	9.3e-199	90.17	cleavage and polyadenylation specificity factor subunit CG7185-like OS=Cucurbita...	[more]

BLAST of MELO3C000217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55670.1	1.6e-118	62.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G13190.1	1.7e-56	45.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55670.2	2.1e-54	43.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G21660.1	3.7e-06	29.29	cold, circadian rhythm, and rna binding 2	[more]
AT2G21660.2	3.7e-06	30.30	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 67..140 e-value: 3.7E-19 score: 79.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 68..137 e-value: 2.9E-13 score: 49.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 66..144 score: 13.361938
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..159 e-value: 3.7E-23 score: 84.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 318..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR23204:SF9	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE	coord: 21..390
None	No IPR available	CDD	cd12372	RRM_CFIm68_CFIm59	coord: 68..141 e-value: 2.01204E-34 score: 120.093
IPR034772	CPSF6/7 family	PANTHER	PTHR23204	CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR	coord: 21..390
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 63..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000217.1	MELO3C000217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding