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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTGGTCGCCGTGACGAAGAGGAGACTGTGGCCGCGACGACAGTCTCCTCTTCGTGCTGAAAATAATGGAAGCTCTCTTGTGGAAGATCTCTCCATGCTGACCGTGACGAAGGGTGCTAATAATGGAAGCTCTCTTATGGGGATATCAAGAG mRNA sequence ATGCTGGTCGCCGTGACGAAGAGGAGACTGTGGCCGCGACGACAGTCTCCTCTTCGTGCTGAAAATAATGGAAGCTCTCTTGTGGAAGATCTCTCCATGCTGACCGTGACGAAGGGTGCTAATAATGGAAGCTCTCTTATGGGGATATCAAGAG Coding sequence (CDS) ATGCTGGTCGCCGTGACGAAGAGGAGACTGTGGCCGCGACGACAGTCTCCTCTTCGTGCTGAAAATAATGGAAGCTCTCTTGTGGAAGATCTCTCCATGCTGACCGTGACGAAGGGTGCTAATAATGGAAGCTCTCTTATGGGGATATCAAGA Protein sequence MLVAVTKRRLWPRRQSPLRAENNGSSLVEDLSMLTVTKGANNGSSLMGISR
Homology
BLAST of MELO3C000171 vs. NCBI nr
Match: KAA0053265.1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 90.5 bits (223), Expect = 4.5e-15 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
Query: 1 MLVAVTKRRLWPRRQSPLRAENNGSSLVEDLSMLTVTKGANNGSSLMGISR 52
ML AVTKRRLWPRRQSPLRAENNGSSLVE LS+L VTKGANNGSSLMGIS+
Sbjct: 57 MLAAVTKRRLWPRRQSPLRAENNGSSLVEALSVLAVTKGANNGSSLMGISK 107
BLAST of MELO3C000171 vs. NCBI nr
Match: TYK03056.1 (F-box protein [Cucumis melo var. makuwa]) HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11 Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0
Query: 1 MLVAVTKRRLWPRRQSPLRAENNGSSLVEDLSMLTVTKGANNGSSLMGISR 52
ML AVTK+RLWPRR+SPLRA+NNGS LVE LS+L VTKGANNGSSL+ +S+
Sbjct: 424 MLAAVTKKRLWPRRKSPLRAKNNGSFLVEALSVLVVTKGANNGSSLVVMSK 474
BLAST of MELO3C000171 vs. ExPASy TrEMBL
Match: A0A5A7UHV4 (Protein FAR-RED ELONGATED HYPOCOTYL 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00590 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
Query: 1 MLVAVTKRRLWPRRQSPLRAENNGSSLVEDLSMLTVTKGANNGSSLMGISR 52
ML AVTKRRLWPRRQSPLRAENNGSSLVE LS+L VTKGANNGSSLMGIS+
Sbjct: 57 MLAAVTKRRLWPRRQSPLRAENNGSSLVEALSVLAVTKGANNGSSLMGISK 107
BLAST of MELO3C000171 vs. ExPASy TrEMBL
Match: A0A5D3BXZ6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001530 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11 Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 0
Query: 1 MLVAVTKRRLWPRRQSPLRAENNGSSLVEDLSMLTVTKGANNGSSLMGISR 52
ML AVTK+RLWPRR+SPLRA+NNGS LVE LS+L VTKGANNGSSL+ +S+
Sbjct: 424 MLAAVTKKRLWPRRKSPLRAKNNGSFLVEALSVLVVTKGANNGSSLVVMSK 474
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KAA0053265.1 | 4.5e-15 | 90.20 | protein FAR-RED ELONGATED HYPOCOTYL 1-like [Cucumis melo var. makuwa] | [more] |
| TYK03056.1 | 3.0e-11 | 76.47 | F-box protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UHV4 | 2.2e-15 | 90.20 | Protein FAR-RED ELONGATED HYPOCOTYL 1-like OS=Cucumis melo var. makuwa OX=119469... | [more] |
| A0A5D3BXZ6 | 1.5e-11 | 76.47 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G001530 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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