MELO3C000106 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000106
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	30S ribosomal protein S12, chloroplastic
Location	chr05: 21732938 .. 21734564 (-)
RNA-Seq Expression	MELO3C000106
Synteny	MELO3C000106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGGGAAAAATAAGTAATAAAAATGACGTAGAAGAGCCCAGATTCCAAATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACGAAAGTTTCGTAAGGGAACTGGAGCAGGCTACCATGAGACAAACAAAAGATCTTCTTTCTAAAGAGATTCGATTCGGAACTATTATATGTCCAAGGTCCAATATTGAAATAATTTCAGAGGTTTTCCTTGACTTTGTCCGTGTCAACAAACAATTCGAAATGCCTCGACTTTTTTAGAACAGGTCCGAGTCAAATAGTAATGATTCGAAGCACCTCTTTTTACACTATTTCGGAAACCCAAGGACTCAATCGTATGGATATGTAAAATACAGGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAAAGTGAGTAAACAGAATTCCATACTCGATCTCATAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAATGATTTTAGCCCTTTATAAAAAGAAAACTTATTCTTGAACCCCTTTCACGCTCATGTCCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATCTGAAACATGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATGAAATAGGATCCACACAAGGAAAGCACTGCCATTCGTTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAATCCATGAACAGGATCTATATAGACACATAGGCCCATGGATCCATACATCTCGATCGGAAAAGAATCAATAGAAAA

mRNA sequence

AGAGGGAAAAATAAGTAATAAaaatgacgtagaagagcccagattccaaatgaatgaaaacgtgactgaattggtcccggtcactcttcgggacggaatggaagaagggaggagattctcgaacgaggaaaaggatccaatgacttcgaaagaattgaacgaggagccgtatgaggtgaaaatctcacgtacggttctgtcgagtggcagtaagggtgacttatctgtcaacttttccactatcacccccaaaaaaccaaactctgccttacgtaaagttgccagagtacgcttaacctcgggatttgaaatcactgcttatatacctggtattggccataatttacaagaacattctgtagtcttagtaaggggggaagggttaaggatttacccggtgtgagatatcacattgttcgaggaaccctagatgctgtcggagtaaaggatcgtcaacaagggcgttctagtgcgttgtagattcttatccaagacttgtatcatttgatgatgccatgtgaatcgctagaaacatgtgaagtgtatggctaacccaataacgaaagtttcgtaagggaactggagcaggctaccatgagacaaacaaaagatcttctttctaaagagattcgattcggaactattatatgtccaaggtccaatattgaaataatttcagaggttttccttgactttgtccgtgtcaacaaacaattcgaaatgcctcgacttttttagaacaggtccgagtcaaatagtaatgattcgaagcacctctttttacactatttcggaaacccaaggactcaatcgtatggatatgtaaaatacaggatttccaatcctagcaggaaagggagggaaacggatactcaatttaaagtgagtaaacagaattccatactcgatctcatagatacatatagaattctgtggaaagccgtattcgatgaaagtcgtatgtacggcttggagggagatctttcatatctttcgagatccaccctacaatatggggtcaAAAAGCCAAAATAAATGATTTTAGCCCTTTATAAAAAGAAAACTTATTCTTGAACCCCTTTCACGCTCATGTCCACGTCGAGGTACTGCAGAAGAAAAAATTGCAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATCTGAAACATGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAGGCAAGACGTGTAGGCGGATCAACTCATCAAGTTCCCATGAAATAGGATCCACACAAGGAAAGCACTGCCATTCGTTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATAAGTTCCGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAatccatgaacaggatctatatagacacataggcccatggatccatacatctcgatcggaaaagaatcaatagaaaa

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGGGGGGAAGGGTTAAGGATTTACCCGGTGTGA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYPV

Homology

[Close]

BLAST of MELO3C000106 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 1.8e-51
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 116

[Close]

BLAST of MELO3C000106 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 107/116 (92.24%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE+ VVLVRGE ++  P
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLP 116

[Close]

BLAST of MELO3C000106 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 105/116 (90.52%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           NFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQEHS VLVRG  ++  P
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLP 116

[Close]

BLAST of MELO3C000106 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG 110
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRG
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRG 187

[Close]

BLAST of MELO3C000106 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLP 119

[Close]

BLAST of MELO3C000106 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-25
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 48  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLV 107
           T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLV
Sbjct: 35  TRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLV 94

Query: 108 RGEGLRIYP 117
           RG  ++  P
Sbjct: 95  RGGRVKDLP 103

[Close]

BLAST of MELO3C000106 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-20
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 55  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRI 114
           +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++ 
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 YP 117
            P
Sbjct: 91  LP 92

[Close]

BLAST of MELO3C000106 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91

[Close]

BLAST of MELO3C000106 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91

[Close]

BLAST of MELO3C000106 vs. ExPASy Swiss-Prot
Match: A4QJD9 (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91

[Close]

BLAST of MELO3C000106 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 8.7e-52
Identity = 109/116 (93.97%), Postives = 111/116 (95.69%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 116

[Close]

BLAST of MELO3C000106 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.1e-44
Identity = 97/108 (89.81%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG 110
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEH VVLVRG
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRG 187

[Close]

BLAST of MELO3C000106 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.7e-44
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLP 119

[Close]

BLAST of MELO3C000106 vs. ExPASy TrEMBL
Match: A0A443Q5G0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02772100 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.7e-43
Identity = 98/111 (88.29%), Postives = 101/111 (90.99%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGL 113
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVL R E L
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLRRKEDL 115

[Close]

BLAST of MELO3C000106 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 94/115 (81.74%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRG  ++  P
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLP 113

[Close]

BLAST of MELO3C000106 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91

[Close]

BLAST of MELO3C000106 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91

[Close]

BLAST of MELO3C000106 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 64  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGEGLRIYP 117
           TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRG  ++  P
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91

[Close]

BLAST of MELO3C000106 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-12
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 97
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSVVLVRGEGLRIYP 117
           N QEHS VL+RG  ++  P
Sbjct: 73  NSQEHSTVLIRGGRVKDSP 91

[Close]

BLAST of MELO3C000106 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-12
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 38  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGH 97
           EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GH
Sbjct: 13  EEKRRTDRTRALDKCPQKTGVCPRVSTRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGH 72

Query: 98  NLQEHSVVLVRGEGLRIYP 117
           N QEHS VL+RG  ++  P
Sbjct: 73  NSQEHSTVLIRGGRVKDSP 91

The following BLAST results are available for this feature:

BLAST of MELO3C000106 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	1.8e-51	93.97	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038902483.1	1.5e-50	92.24	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038896566.1	2.9e-49	90.52	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
KAF1876942.1	1.1e-43	89.81	hypothetical protein Lal_00033867 [Lupinus albus]	[more]
RWR98012.1	1.4e-43	86.09	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]

BLAST of MELO3C000106 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	2.3e-25	85.51	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	3.8e-20	79.03	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4QJV5	2.5e-19	88.68	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q3V510	2.5e-19	88.68	30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE...	[more]
A4QJD9	2.5e-19	88.68	30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=...	[more]

BLAST of MELO3C000106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	8.7e-52	93.97	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A6A5N1Q8	5.1e-44	89.81	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A3S3NSS0	6.7e-44	86.09	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A443Q5G0	9.7e-43	88.29	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A443Q5I9	4.1e-41	81.74	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]

BLAST of MELO3C000106 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	1.8e-20	88.68	ribosomal protein S12A	[more]
ATCG01230.1	1.8e-20	88.68	ribosomal protein S12B	[more]
ATCG00905.1	1.8e-20	88.68	ribosomal protein S12C	[more]
AT2G07675.1	3.0e-12	46.84	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	3.0e-12	46.84	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 83..102 score: 75.14 coord: 102..117 score: 43.13 coord: 67..82 score: 91.32
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..111 e-value: 8.7E-21 score: 73.7
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 33..109
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 68..75
None	No IPR available	GENE3D	2.40.50.140		coord: 11..116 e-value: 3.8E-27 score: 96.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 33..109
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000106.1	MELO3C000106.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome