MELO.jh102202.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102202.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr08: 19928904 .. 19930175 (+)
RNA-Seq Expression	MELO.jh102202.1
Synteny	MELO.jh102202.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCTCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCCCTCCAACATTCTTCTGCGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACTCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTTCGTAGTTTAACTTCTACTGGTCTTTTAAACAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCTGCTTTGTCCTTCCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGATATTTGGGGACCAGCTCCATGTCCTACAGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGTTTTACTTGGATTTACTTTCTCAAAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGATTCAAACACAATTTTCTAGCAAAATCAAAATTCTTCGCACAGATAATGCAATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGGACGAGCGGAACGCAAACACCGCCACATTTTAGACTCTGTTCTTGCCCAACTCCTTTCTGGATCCTGTCCTGAAAAATTTTGGGGAGAGGCTGCCCTCACCTCTATTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTCCCCATTTGAACGACTATACGGTACTCCTCCTACTTACTCTCATCTCAAAGTCTTTGGGTGTGCATGCTTTGTGTTATTACATTCCCATGAACATACCAAACTGGAACCTCGTGCTCGTCTCTGTTGTTTCTTTGGTTATGGCACCGAACATAAAGGTTTTCGTTTTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGCCATGTCACCTTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTCCGCACTCATTCTTTACTGATCCTTCTACCCCTCTATTTCCCACTCCTGATTCACCATCCAACACTACATCTTGTCCCCCACTCACATCTTAG

mRNA sequence

ATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCTCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCCCTCCAACATTCTTCTGCGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACTCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTTCGTAGTTTAACTTCTACTGGTCTTTTAAACAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCTGCTTTGTCCTTCCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGATATTTGGGGACCAGCTCCATGTCCTACAGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGTTTTACTTGGATTTACTTTCTCAAAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGATTCAAACACAATTTTCTAGCAAAATCAAAATTCTTCGCACAGATAATGCAATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGGACGAGCGGAACGCAAACACCGCCACATTTTAGACTCTGTTCTTGCCCAACTCCTTTCTGGATCCTGTCCTGAAAAATTTTGGGGAGAGGCTGCCCTCACCTCTATTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTCCCCATTTGAACGACTATACGGTACTCCTCCTACTTACTCTCATCTCAAAGTCTTTGGGTGTGCATGCTTTGTGTTATTACATTCCCATGAACATACCAAACTGGAACCTCGTGCTCGTCTCTGTTGTTTCTTTGGTTATGGCACCGAACATAAAGGTTTTCGTTTTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGCCATGTCACCTTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTCCGCACTCATTCTTTACTGATCCTTCTACCCCTCTATTTCCCACTCCTGATTCACCATCCAACACTACATCTTGTCCCCCACTCACATCTTAG

Coding sequence (CDS)

ATGTCTATTTCCCACATTGGCACCGTTAATACACCCACCATCAAACTTTCCAACACCTATCATGTCTCAAATCTCACATTCAACCTAGCTTCTGTTGGTCAATTATGTGATCTCGGACTTACTATTATTTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTCAGACGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCCCTCCAACATTCTTCTGCGTTTCCAGCCATCTCTGCTCCCGTCACTGATAACACTCTATTTCAGTGGCATCTTCGTTTAGGTCATGCATCCTCTAATAAACTTCGTAGTTTAACTTCTACTGGTCTTTTAAACAATGTTTCTCAGTTTAATACTTTTGATTGTTTACATTGCAAAATGGCGAAACAACCTGCTTTGTCCTTCCCTAAATCTGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTCTGATATTTGGGGACCAGCTCCATGTCCTACAGTTAATGGTTATCGATATTTTGTGTTATTTATTGATGATTATTCTCGTTTTACTTGGATTTACTTTCTCAAAAATCGTTCCTCCTTATATCAAATATATGTTGATTTTGCAAATATGATTCAAACACAATTTTCTAGCAAAATCAAAATTCTTCGCACAGATAATGCAATGGAATATAAGGACTCTCGTTTTCTTTCCTTCCTTGCACAACAAGGCACTTTGATTCAACGCTCATGTCCTCACACTTCCCAGCAAAATGGACGAGCGGAACGCAAACACCGCCACATTTTAGACTCTGTTCTTGCCCAACTCCTTTCTGGATCCTGTCCTGAAAAATTTTGGGGAGAGGCTGCCCTCACCTCTATTTATGTCATCAATCGCCTTCCATCTCAGGTCATACACAATATTTCCCCATTTGAACGACTATACGGTACTCCTCCTACTTACTCTCATCTCAAAGTCTTTGGGTGTGCATGCTTTGTGTTATTACATTCCCATGAACATACCAAACTGGAACCTCGTGCTCGTCTCTGTTGTTTCTTTGGTTATGGCACCGAACATAAAGGTTTTCGTTTTTGGGATCCTATCTCTCAACGATTACGTATTTCTCGCCATGTCACCTTTTGGGAACATCGTATGTTTTCTAGTCTTTCTTCATTTCATGCCTCTCTATCTAGTCCGCACTCATTCTTTACTGATCCTTCTACCCCTCTATTTCCCACTCCTGATTCACCATCCAACACTACATCTTGTCCCCCACTCACATCTTAG

Protein sequence

MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVIHNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFWDPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPPLTS

Homology

[Close]

BLAST of MELO.jh102202.1 vs. NCBI nr
Match: KAA0065380.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 855 bits (2209), Expect = 8.45e-300
Identity = 415/423 (98.11%), Postives = 417/423 (98.58%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHV NLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 330 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 389

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHS  FPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 390 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 449

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 450 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 509

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFL+NRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 510 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 569

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSV AQLLSGSCPEKFWGEAALTS+YVINRLPSQVI
Sbjct: 570 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 629

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCF GYGTEHKGFR W
Sbjct: 630 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 689

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 690 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 749

Query: 421 LTS 423
           LTS
Sbjct: 750 LTS 752

[Close]

BLAST of MELO.jh102202.1 vs. NCBI nr
Match: KAA0043149.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 855 bits (2209), Expect = 2.21e-299
Identity = 415/423 (98.11%), Postives = 417/423 (98.58%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHV NLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHS  FPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFL+NRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSV AQLLSGSCPEKFWGEAALTS+YVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCF GYGTEHKGFR W
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 LTS 423
           LTS
Sbjct: 782 LTS 784

[Close]

BLAST of MELO.jh102202.1 vs. NCBI nr
Match: KAA0036574.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 855 bits (2209), Expect = 2.21e-299
Identity = 415/423 (98.11%), Postives = 417/423 (98.58%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHV NLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHS  FPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFL+NRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSV AQLLSGSCPEKFWGEAALTS+YVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCF GYGTEHKGFR W
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 LTS 423
           LTS
Sbjct: 782 LTS 784

[Close]

BLAST of MELO.jh102202.1 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 656 bits (1693), Expect = 4.93e-227
Identity = 316/411 (76.89%), Postives = 353/411 (85.89%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           M+I+H+GT+NTP++ L +TY V NLTFNL SVGQLCDLGLT+ FSS+GCQVQD QTGQ I
Sbjct: 357 MNITHMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTI 416

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFEL SLQ  S  P+ISAPVTD+  +QWHLRLGHAS  KLR L S   LN++
Sbjct: 417 GTGRKVGRLFELLSLQVPS--PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSI 476

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           ++F  F+CL+CK+AKQPALSF KS S+CDKPF LIHSDIWGPAP  TV+GYRY+VLFIDD
Sbjct: 477 TKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDD 536

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           +SRFTWIYFLK+RS L + Y++FANMI+TQFS  IK LRTDNA+EYKDS  LSFL+QQGT
Sbjct: 537 FSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGT 596

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           L+QRSCPHTSQQNGRAERKHRHILDSV A LLS SCPEKFWGEAALTS+Y INRLPS V+
Sbjct: 597 LVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVL 656

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
            NISPFE+LYGTPP YS+LKVFGCACFVLLH HEHTKLEPRARLC F GYGTEHKGFR W
Sbjct: 657 QNISPFEKLYGTPPNYSNLKVFGCACFVLLHPHEHTKLEPRARLCWFLGYGTEHKGFRCW 716

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDS 411
           DP+S RLRISRHVTFWEH MFS LSSFH S SSP SFFTD S  LFP P+S
Sbjct: 717 DPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQSFFTDTSIDLFPLPES 765

[Close]

BLAST of MELO.jh102202.1 vs. NCBI nr
Match: KAA0054248.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 644 bits (1662), Expect = 2.37e-222
Identity = 311/411 (75.67%), Postives = 350/411 (85.16%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           M+I+H+GT+NTP++ L +TY V NLTFNL SVGQLCDLGLT+ FSS+GCQVQD QTGQ I
Sbjct: 357 MNITHMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTI 416

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLF+L SLQ  S  P+ISAPVT++  +QWHLRLGHAS  KLR L S   LN++
Sbjct: 417 GTGRKVGRLFKLLSLQVPS--PSISAPVTNSDTYQWHLRLGHASPEKLRHLISINNLNSI 476

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           ++F  F+CL+CK+AKQPALSF KS S+CDKPF LIHSDIWGPAP  TV+GYRY+VLFIDD
Sbjct: 477 TKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDD 536

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           +SRFTWIYFLK+RS L   Y++FANMI+TQFS  IK LRTDNA+EYKDS  LSFL+QQGT
Sbjct: 537 FSRFTWIYFLKHRSELSHTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGT 596

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           L+QRSCPHTSQQNGRAERKHRHILDSV A LLS SCPEK WGEAALTS+Y INRLPS V+
Sbjct: 597 LVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKCWGEAALTSVYTINRLPSSVL 656

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
            NIS FE+LYGTPP YS+LKVFGCACFVLLH HEHTKLEPRARLC F GYGTEHKGFR W
Sbjct: 657 QNISSFEKLYGTPPNYSNLKVFGCACFVLLHPHEHTKLEPRARLCWFLGYGTEHKGFRCW 716

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDS 411
           DP+S RLRISRHVTFWEH MFS LSSFH S SSP SFFT+ S  LFP P+S
Sbjct: 717 DPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQSFFTNTSIDLFPLPES 765

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-59
Identity = 148/441 (33.56%), Postives = 238/441 (53.97%), Query Frame = 0


Query: 3   ISHIGTVNTPT----IKLSNTYHVSNLTFNLASVGQLCDL-GLTIIFSSHGCQVQDSQTG 62
           ISH G+ +  T    + L N  +V N+  NL SV +LC+  G+++ F     QV+D  TG
Sbjct: 370 ISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTG 429

Query: 63  QVIGTGRKVGRLFE--LTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTG 122
             +  G+    L+E  + S Q  S F + S+  T ++   WH RLGH + + L S+ S  
Sbjct: 430 VPLLQGKTKDELYEWPIASSQPVSLFASPSSKATHSS---WHARLGHPAPSILNSVISNY 489

Query: 123 LLNNVSQFNTF-DCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYF 182
            L+ ++  + F  C  C + K   + F +S     +P   I+SD+W  +P  + + YRY+
Sbjct: 490 SLSVLNPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYY 549

Query: 183 VLFIDDYSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSF 242
           V+F+D ++R+TW+Y LK +S + + ++ F N+++ +F ++I    +DN  E+       +
Sbjct: 550 VIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEY 609

Query: 243 LAQQGTLIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINR 302
            +Q G     S PHT + NG +ERKHRHI+++ L  L   S P+ +W  A   ++Y+INR
Sbjct: 610 FSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINR 669

Query: 303 LPSQVIHNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEH 362
           LP+ ++   SPF++L+GT P Y  L+VFGCAC+  L  +   KL+ ++R C F GY    
Sbjct: 670 LPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQ 729

Query: 363 KGFRFWDPISQRLRISRHVTFWEHRMFSSLSSFHASLS-------------SPHSFFTDP 421
             +      + RL ISRHV F E+      S++ A+LS             SPH+  T P
Sbjct: 730 SAYLCLHLQTSRLYISRHVRFDENCF--PFSNYLATLSPVQEQRRESSCVWSPHT--TLP 789

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-59
Identity = 140/424 (33.02%), Postives = 220/424 (51.89%), Query Frame = 0


Query: 3   ISHIGTVNTPT----IKLSNTYHVSNLTFNLASVGQLCDLG-LTIIFSSHGCQVQDSQTG 62
           I+H G+ + PT    + L+   +V N+  NL SV +LC+   +++ F     QV+D  TG
Sbjct: 349 ITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTG 408

Query: 63  QVIGTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLL 122
             +  G+    L+E   +  S A    ++P +  T   WH RLGH S   L S+ S   L
Sbjct: 409 VPLLQGKTKDELYE-WPIASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSL 468

Query: 123 NNVS-QFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVL 182
             ++       C  C + K   + F  S     KP   I+SD+W  +P  +++ YRY+V+
Sbjct: 469 PVLNPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVI 528

Query: 183 FIDDYSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLA 242
           F+D ++R+TW+Y LK +S +   ++ F ++++ +F ++I  L +DN  E+   R   +L+
Sbjct: 529 FVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR--DYLS 588

Query: 243 QQGTLIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLP 302
           Q G     S PHT + NG +ERKHRHI++  L  L   S P+ +W  A   ++Y+INRLP
Sbjct: 589 QHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLP 648

Query: 303 SQVIHNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKG 362
           + ++   SPF++L+G PP Y  LKVFGCAC+  L  +   KLE +++ C F GY      
Sbjct: 649 TPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSA 708

Query: 363 FRFWDPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTT 421
           +      + RL  SRHV F E     S ++F  S S      + P+ P   T  +     
Sbjct: 709 YLCLHIPTGRLYTSRHVQFDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVL 768

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-51
Identity = 130/405 (32.10%), Postives = 200/405 (49.38%), Query Frame = 0


Query: 13  TIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRLFEL 72
           T+ L +  HV +L  NL S   L   G    F++   ++  ++   VI  G   G L+  
Sbjct: 347 TLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRL--TKGSLVIAKGVARGTLYRT 406

Query: 73  TSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHCK 132
            +         ++A   + ++  WH R+GH S   L+ L    L++         C +C 
Sbjct: 407 NA---EICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCL 466

Query: 133 MAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDYSRFTWIYFLKN 192
             KQ  +SF  S+        L++SD+ GP    ++ G +YFV FIDD SR  W+Y LK 
Sbjct: 467 FGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKT 526

Query: 193 RSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTLIQRSCPHTSQQ 252
           +  ++Q++  F  +++ +   K+K LR+DN  EY    F  + +  G   +++ P T Q 
Sbjct: 527 KDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQH 586

Query: 253 NGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVIHNISPFERLYGT 312
           NG AER +R I++ V + L     P+ FWGEA  T+ Y+INR PS  +    P       
Sbjct: 587 NGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNK 646

Query: 313 PPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFWDPISQRLRISRH 372
             +YSHLKVFGC  F  +   + TKL+ ++  C F GYG E  G+R WDP+ +++  SR 
Sbjct: 647 EVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRD 706

Query: 373 VTFWEHRMFSSLS-SFHASLSSPHSFFTDPSTPLFPTPDSPSNTT 417
           V F E  + ++   S         +F T PST   PT  S  +TT
Sbjct: 707 VVFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPT--SAESTT 744

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-41
Identity = 110/384 (28.65%), Postives = 181/384 (47.14%), Query Frame = 0


Query: 10  NTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRL 69
           N   I L +         NL SV +L + G++I F   G  +  S+ G ++   +  G L
Sbjct: 339 NDHEITLEDVLFCKEAAGNLMSVKRLQEAGMSIEFDKSGVTI--SKNGLMV--VKNSGML 398

Query: 70  FELTSLQHSSAFPAISAPVTDNTLFQ-WHLRLGHASSNKLRSLTSTGLLNNVSQFNTFD- 129
             +  +     F A S        F+ WH R GH S  KL  +    + ++ S  N  + 
Sbjct: 399 NNVPVIN----FQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLEL 458

Query: 130 ----CLHCKMAKQPALSFP--KSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDDY 189
               C  C   KQ  L F   K  +   +P  ++HSD+ GP    T++   YFV+F+D +
Sbjct: 459 SCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQF 518

Query: 190 SRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGTL 249
           + +   Y +K +S ++ ++ DF    +  F+ K+  L  DN  EY  +    F  ++G  
Sbjct: 519 THYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGIS 578

Query: 250 IQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVIH 309
              + PHT Q NG +ER  R I +     +      + FWGEA LT+ Y+INR+PS+ + 
Sbjct: 579 YHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALV 638

Query: 310 NIS--PFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRF 369
           + S  P+E  +   P   HL+VFG   +V +  ++  K + ++    F GY  E  GF+ 
Sbjct: 639 DSSKTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGY--EPNGFKL 698

Query: 370 WDPISQRLRISRHVTFWEHRMFSS 384
           WD ++++  ++R V   E  M +S
Sbjct: 699 WDAVNEKFIVARDVVVDETNMVNS 711

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy Swiss-Prot
Match: Q12490 (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-17
Identity = 74/301 (24.58%), Postives = 128/301 (42.52%), Query Frame = 0


Query: 21  HVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVIGTGRKVGRLFELTS---LQH 80
           H  N+ ++L S+ +L  + +T  F+ +   V +   G V+    K G  + ++    L  
Sbjct: 518 HTPNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPS 577

Query: 81  SSAFPAISAPVTDNTLFQW-----HLRLGHASSNKLRSLTSTGLLNNVSQFNTFD----- 140
           + + P I+   T  +  ++     H  L HA++  +R        N ++ FN  D     
Sbjct: 578 NISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKN---NTITYFNESDVDWSS 637

Query: 141 -----CLHCKMAKQPALSFPKSASL----CDKPFGLIHSDIWGPAPCPTVNGYRYFVLFI 200
                C  C + K       K + L      +PF  +H+DI+GP      +   YF+ F 
Sbjct: 638 AIDYQCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFT 697

Query: 201 DDYSRFTWIYFLKNR--SSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLA 260
           D+ ++F W+Y L +R   S+  ++      I+ QF + + +++ D   EY +     FL 
Sbjct: 698 DETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLE 757

Query: 261 QQGTLIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLP 298
           + G     +    S+ +G AER +R +LD    QL     P   W  A   S  V N L 
Sbjct: 758 KNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLA 812

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL
Match: A0A5A7VDW0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00430 PE=4 SV=1)

HSP 1 Score: 855 bits (2209), Expect = 4.09e-300
Identity = 415/423 (98.11%), Postives = 417/423 (98.58%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHV NLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 330 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 389

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHS  FPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 390 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 449

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 450 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 509

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFL+NRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 510 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 569

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSV AQLLSGSCPEKFWGEAALTS+YVINRLPSQVI
Sbjct: 570 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 629

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCF GYGTEHKGFR W
Sbjct: 630 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 689

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 690 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 749

Query: 421 LTS 423
           LTS
Sbjct: 750 LTS 752

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL
Match: A0A5D3DG18 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00850 PE=4 SV=1)

HSP 1 Score: 855 bits (2209), Expect = 1.07e-299
Identity = 415/423 (98.11%), Postives = 417/423 (98.58%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHV NLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHS  FPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFL+NRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSV AQLLSGSCPEKFWGEAALTS+YVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCF GYGTEHKGFR W
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 LTS 423
           LTS
Sbjct: 782 LTS 784

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL
Match: A0A5A7SZ66 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00840 PE=4 SV=1)

HSP 1 Score: 855 bits (2209), Expect = 1.07e-299
Identity = 415/423 (98.11%), Postives = 417/423 (98.58%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           MSISHIGTVNTPTIKLSNTYHV NLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI
Sbjct: 362 MSISHIGTVNTPTIKLSNTYHVPNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 421

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFELTSLQHS  FPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV
Sbjct: 422 GTGRKVGRLFELTSLQHSPVFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 481

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD
Sbjct: 482 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 541

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           YSRFTWIYFL+NRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT
Sbjct: 542 YSRFTWIYFLRNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 601

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           LIQRSCPHTSQQNGRAERKHRHILDSV AQLLSGSCPEKFWGEAALTS+YVINRLPSQVI
Sbjct: 602 LIQRSCPHTSQQNGRAERKHRHILDSVRAQLLSGSCPEKFWGEAALTSVYVINRLPSQVI 661

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
           HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCF GYGTEHKGFR W
Sbjct: 662 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFLGYGTEHKGFRCW 721

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 420
           DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP
Sbjct: 722 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDSPSNTTSCPP 781

Query: 421 LTS 423
           LTS
Sbjct: 782 LTS 784

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 656 bits (1693), Expect = 2.39e-227
Identity = 316/411 (76.89%), Postives = 353/411 (85.89%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           M+I+H+GT+NTP++ L +TY V NLTFNL SVGQLCDLGLT+ FSS+GCQVQD QTGQ I
Sbjct: 357 MNITHMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTI 416

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLFEL SLQ  S  P+ISAPVTD+  +QWHLRLGHAS  KLR L S   LN++
Sbjct: 417 GTGRKVGRLFELLSLQVPS--PSISAPVTDSDTYQWHLRLGHASPEKLRHLISINNLNSI 476

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           ++F  F+CL+CK+AKQPALSF KS S+CDKPF LIHSDIWGPAP  TV+GYRY+VLFIDD
Sbjct: 477 TKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDD 536

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           +SRFTWIYFLK+RS L + Y++FANMI+TQFS  IK LRTDNA+EYKDS  LSFL+QQGT
Sbjct: 537 FSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGT 596

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           L+QRSCPHTSQQNGRAERKHRHILDSV A LLS SCPEKFWGEAALTS+Y INRLPS V+
Sbjct: 597 LVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVL 656

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
            NISPFE+LYGTPP YS+LKVFGCACFVLLH HEHTKLEPRARLC F GYGTEHKGFR W
Sbjct: 657 QNISPFEKLYGTPPNYSNLKVFGCACFVLLHPHEHTKLEPRARLCWFLGYGTEHKGFRCW 716

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDS 411
           DP+S RLRISRHVTFWEH MFS LSSFH S SSP SFFTD S  LFP P+S
Sbjct: 717 DPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQSFFTDTSIDLFPLPES 765

[Close]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL
Match: A0A5A7UGZ4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G002020 PE=4 SV=1)

HSP 1 Score: 644 bits (1662), Expect = 1.15e-222
Identity = 311/411 (75.67%), Postives = 350/411 (85.16%), Query Frame = 0


Query: 1   MSISHIGTVNTPTIKLSNTYHVSNLTFNLASVGQLCDLGLTIIFSSHGCQVQDSQTGQVI 60
           M+I+H+GT+NTP++ L +TY V NLTFNL SVGQLCDLGLT+ FSS+GCQVQD QTGQ I
Sbjct: 357 MNITHMGTINTPSLNLPHTYCVPNLTFNLVSVGQLCDLGLTVSFSSNGCQVQDPQTGQTI 416

Query: 61  GTGRKVGRLFELTSLQHSSAFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNV 120
           GTGRKVGRLF+L SLQ  S  P+ISAPVT++  +QWHLRLGHAS  KLR L S   LN++
Sbjct: 417 GTGRKVGRLFKLLSLQVPS--PSISAPVTNSDTYQWHLRLGHASPEKLRHLISINNLNSI 476

Query: 121 SQFNTFDCLHCKMAKQPALSFPKSASLCDKPFGLIHSDIWGPAPCPTVNGYRYFVLFIDD 180
           ++F  F+CL+CK+AKQPALSF KS S+CDKPF LIHSDIWGPAP  TV+GYRY+VLFIDD
Sbjct: 477 TKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLIHSDIWGPAPTTTVHGYRYYVLFIDD 536

Query: 181 YSRFTWIYFLKNRSSLYQIYVDFANMIQTQFSSKIKILRTDNAMEYKDSRFLSFLAQQGT 240
           +SRFTWIYFLK+RS L   Y++FANMI+TQFS  IK LRTDNA+EYKDS  LSFL+QQGT
Sbjct: 537 FSRFTWIYFLKHRSELSHTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGT 596

Query: 241 LIQRSCPHTSQQNGRAERKHRHILDSVLAQLLSGSCPEKFWGEAALTSIYVINRLPSQVI 300
           L+QRSCPHTSQQNGRAERKHRHILDSV A LLS SCPEK WGEAALTS+Y INRLPS V+
Sbjct: 597 LVQRSCPHTSQQNGRAERKHRHILDSVRALLLSASCPEKCWGEAALTSVYTINRLPSSVL 656

Query: 301 HNISPFERLYGTPPTYSHLKVFGCACFVLLHSHEHTKLEPRARLCCFFGYGTEHKGFRFW 360
            NIS FE+LYGTPP YS+LKVFGCACFVLLH HEHTKLEPRARLC F GYGTEHKGFR W
Sbjct: 657 QNISSFEKLYGTPPNYSNLKVFGCACFVLLHPHEHTKLEPRARLCWFLGYGTEHKGFRCW 716

Query: 361 DPISQRLRISRHVTFWEHRMFSSLSSFHASLSSPHSFFTDPSTPLFPTPDS 411
           DP+S RLRISRHVTFWEH MFS LSSFH S SSP SFFT+ S  LFP P+S
Sbjct: 717 DPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQSFFTNTSIDLFPLPES 765

The following BLAST results are available for this feature:

BLAST of MELO.jh102202.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065380.1	8.45e-300	98.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0043149.1	2.21e-299	98.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036574.1	2.21e-299	98.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK15021.1	4.93e-227	76.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054248.1	2.37e-222	75.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of MELO.jh102202.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.8e-59	33.56	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.8e-59	33.02	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	3.0e-51	32.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.2e-41	28.65	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12490	1.7e-17	24.58	Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 2...	[more]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDW0	4.09e-300	98.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DG18	1.07e-299	98.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SZ66	1.07e-299	98.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CT53	2.39e-227	76.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UGZ4	1.15e-222	75.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of MELO.jh102202.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 145..322 e-value: 4.1E-37 score: 129.4
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 80..136 e-value: 3.7E-10 score: 39.5
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 150..249 e-value: 1.2E-13 score: 51.2
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 147..313 score: 20.282959
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 68..420
None	No IPR available	PANTHER	PTHR11439:SF324	RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 68..420
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 149..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102202.1.t1	MELO.jh102202.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding