MELO.jh102200.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102200.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr08: 19528808 .. 19531011 (-)
RNA-Seq Expression	MELO.jh102200.1
Synteny	MELO.jh102200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACTACGTTAGACCAGCTAGCGAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTGAGGAAAGCCTAAGATCGACAGAAAAGTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAGGTGTTATTCGTTTCGGAAGAAAAGGTAAGTTAAGTCCTAGATATATTGGGCCATATCAGATAACGGAACGAGTGGGACCAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCGCATGTGTTGCAAGATCAACCAGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTCAGATTCTCGACAGAAAGGAACAAGTTTTGAGAAACAAAACGATTCCACTCATAAAAGTTTTGTGGAGACATCATGGAGCGGAGGAGGCAACTTGGGAACCAGAATATCAGATGAAGAAGAGCTATCCGATACTTTTCAGTTAAGGACATTCTAAATTTCGAGGACGAAATTTTCTAAAGGGAAGGTAAGTTGTAAACCCGATATTTTCTTGGTTTAATTTCTTTAAATGTGGAAAAAAAAAAGAAAAATGGAAATTAAGTGTAAATATAAATATATATATTTATATATTAAATAGTTTTATTAAATTAATTAAAGAAAAGAAAGAAAAGAAAGGACAAAAAGAAGAAAAGGAGAAGAAAATTTCATTTTCTCTTTTCTTCTTCTTCTTCTCTTCCCTTCACCGCCAAGTTTGAAGACATCCAAGTTCCCTTTATTTTTTTTCTTTTTCCTTCTTCAATTTGCAGAGAACTTCTAAGAGAGTTTGGAAGAAGAAGAGAAATTTTACTAGAATTTTTAGGTTGAAGAAGAGGAGGAGAACTCAAGCAAAGTGTATCAATGGCTGAATTTTAGTTCATTCTCCACATCACTGGTTTTTAATTCGGTTTGAACTCTTCAAAAGGAATTAAGAAGTGAGATTTACATTTACTGAAAGTTAACTCATTTTTAAACAAACTTTATGAAGAACGTTGGAGCAAATTCGGATTTTCATTTGGTGCTTTTTGATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGGTTTCTGGTTTTTCTTGTATTTCAGAGTGAATTAGTATGAAGTTTTGTTTTAAGAACTACAATTTTCCACGAAAGAGCTGAGTAAAGTTCGAGCTTTGTGTAAAATTTATAAGCAGGCATGTTTTAATATTTTATGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTTAGATTTCGTTGTTGACGTTGAGTGTATTCCGTAACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTGGGCCCCACTACATCGTAGTGCTTGTAAACGTTGTTGTACTAGGTGTACCCTACACAACGTAGATTCGTCATGTTAGTTAAAATGCTTCGATATACTTGATATGCCTTGCTAGATTTCAATGATGAACATGCTGAGTATTTAAGGAAGTTATTCTTACTATTACACATTTACATTTACGACTTGTATAAACAGATTTATATGTGTAAAGTTTTCACGTGCTCTTATCTTTAAATTCATAGTTTTAAACTGAGTCACTCACTGAGCTCCATAGCTCACCCTTTCCAAAATGTTTTACCCATTTTCCAGGTAGAGATCGACTTCCCGGTGCCTGA

mRNA sequence

ATGACAACTACGTTAGACCAGCTAGCGAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGATAACGGAACGAGTGGGACCAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCGCATGTGTTGCAAGATCAACCAGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTCAGATTCTCGACAGAAAGGAACAAGTTTTGAGAAACAAAACGATTCCACTCATAAAAGTTTTGTGGAGACATCATGGAGCGGAGGAGGCAACTTGGGAACCAGAATATCAGATGAAGAAGAGCTATCCGATACTTTTCAGTAGAGATCGACTTCCCGGTGCCTGA

Coding sequence (CDS)

ATGACAACTACGTTAGACCAGCTAGCGAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGATAACGGAACGAGTGGGACCAGCAGCGTATAGACTTGAGTTGCCAATAGAACTTGCACGAATACATGATGTTTTCCATGTATCCATGTTAAGAAAATATATACCAGATCCATCGCATGTGTTGCAAGATCAACCAGTTGAATTAAAAGAAGATTTGAGTTATGTTGAAGAACCAGTTCAGATTCTCGACAGAAAGGAACAAGTTTTGAGAAACAAAACGATTCCACTCATAAAAGTTTTGTGGAGACATCATGGAGCGGAGGAGGCAACTTGGGAACCAGAATATCAGATGAAGAAGAGCTATCCGATACTTTTCAGTAGAGATCGACTTCCCGGTGCCTGA

Protein sequence

MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELITERVGPAAYRLELPIELARIHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPEYQMKKSYPILFSRDRLPGA

Homology

[Close]

BLAST of MELO.jh102200.1 vs. NCBI nr
Match: KAA0066351.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 462 bits (1188), Expect = 2.28e-162
Identity = 237/312 (75.96%), Postives = 240/312 (76.92%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVP+SIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHP+T
Sbjct: 1   MTSTLDQLARLYVDKIVSQYGVPLSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPKT 60

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGM PYEALYGRPCRT
Sbjct: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRT 120

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGE KLVGPEL                                           
Sbjct: 121 PVCWNEVGEWKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRKNVEFQVGDQVFL 180

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIEL RIHDVFHVSMLRKYI
Sbjct: 181 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELVRIHDVFHVSMLRKYI 240

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE
Sbjct: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 300

[Close]

BLAST of MELO.jh102200.1 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 471 bits (1211), Expect = 2.36e-161
Identity = 242/312 (77.56%), Postives = 243/312 (77.88%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT
Sbjct: 307 MTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 366

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 367 DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 426

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 427 PVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 486

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI
Sbjct: 487 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 546

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE
Sbjct: 547 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 606

[Close]

BLAST of MELO.jh102200.1 vs. NCBI nr
Match: KAA0039736.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 459 bits (1181), Expect = 2.65e-161
Identity = 236/312 (75.64%), Postives = 240/312 (76.92%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVP+SIVSDRDPRFTSK WPSLQKAMGTGLKFSTSFHPQT
Sbjct: 1   MTSTLDQLARLYVDKIVSQYGVPMSIVSDRDPRFTSKVWPSLQKAMGTGLKFSTSFHPQT 60

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVL+LKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 61  DGQSERTIQTLEDMLRACVLRLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 121 PVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 180

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPI+LARIHDVFHVSMLRKYI
Sbjct: 181 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIKLARIHDVFHVSMLRKYI 240

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTI LIKV WRHHGAEEATWEPE
Sbjct: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIQLIKVFWRHHGAEEATWEPE 300

[Close]

BLAST of MELO.jh102200.1 vs. NCBI nr
Match: KAA0051020.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 456 bits (1174), Expect = 3.09e-160
Identity = 237/312 (75.96%), Postives = 238/312 (76.28%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQK MGT LKFSTSFHPQT
Sbjct: 1   MTSTLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKTMGTRLKFSTSFHPQT 60

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 121 PVCWNEVGERKLVGPELVQITTSNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 180

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI
Sbjct: 181 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLR KTI LIKVLWRHHGAEEATWEPE
Sbjct: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRKKTILLIKVLWRHHGAEEATWEPE 300

[Close]

BLAST of MELO.jh102200.1 vs. NCBI nr
Match: KAA0059912.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 471 bits (1211), Expect = 7.07e-159
Identity = 242/312 (77.56%), Postives = 243/312 (77.88%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT
Sbjct: 497 MTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 556

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 557 DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 616

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 617 PVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 676

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI
Sbjct: 677 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 736

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE
Sbjct: 737 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 796

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 58/138 (42.03%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 4    TLD--QLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTD 63
            TLD  QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ HPQTD
Sbjct: 1235 TLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTD 1294

Query: 64   GQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTP 123
            GQSERTIQTL  +LRA V     +W  +LP +EF YN+    ++G +P+E   G    TP
Sbjct: 1295 GQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1354

Query: 124  VCW--NEVGERKLVGPEL 138
                 +EV  R     EL
Sbjct: 1355 AIKSDDEVNARSFTAVEL 1372

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-18
Identity = 57/138 (41.30%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 4    TLD--QLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTD 63
            TLD  QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ HPQTD
Sbjct: 1209 TLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANHPQTD 1268

Query: 64   GQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTP 123
            GQSERTIQTL  +LRA       +W  +LP +EF YN+    ++G +P+E   G    TP
Sbjct: 1269 GQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYLPNTP 1328

Query: 124  VCW--NEVGERKLVGPEL 138
                 +EV  R     EL
Sbjct: 1329 AIKSDDEVNARSFTAVEL 1346

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-17
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 4    TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQ 63
            T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + PQTDGQ
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084

Query: 64   SERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALY 115
            +ERT QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++
Sbjct: 1085 TERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-17
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 4    TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQ 63
            T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + PQTDGQ
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084

Query: 64   SERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALY 115
            +ERT QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++
Sbjct: 1085 TERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-17
Identity = 40/111 (36.04%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 4    TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQ 63
            T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + PQTDGQ
Sbjct: 1025 TAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQ 1084

Query: 64   SERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALY 115
            +ERT QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++
Sbjct: 1085 TERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy TrEMBL
Match: A0A5A7VL47 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004160 PE=4 SV=1)

HSP 1 Score: 462 bits (1188), Expect = 1.10e-162
Identity = 237/312 (75.96%), Postives = 240/312 (76.92%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVP+SIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHP+T
Sbjct: 1   MTSTLDQLARLYVDKIVSQYGVPLSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPKT 60

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGM PYEALYGRPCRT
Sbjct: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRT 120

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGE KLVGPEL                                           
Sbjct: 121 PVCWNEVGEWKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRKNVEFQVGDQVFL 180

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIEL RIHDVFHVSMLRKYI
Sbjct: 181 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELVRIHDVFHVSMLRKYI 240

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE
Sbjct: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 300

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy TrEMBL
Match: A0A5A7UGA0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00360 PE=4 SV=1)

HSP 1 Score: 471 bits (1211), Expect = 1.14e-161
Identity = 242/312 (77.56%), Postives = 243/312 (77.88%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT
Sbjct: 307 MTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 366

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 367 DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 426

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 427 PVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 486

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI
Sbjct: 487 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 546

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE
Sbjct: 547 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 606

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy TrEMBL
Match: A0A5A7TCE6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13562G00010 PE=4 SV=1)

HSP 1 Score: 459 bits (1181), Expect = 1.28e-161
Identity = 236/312 (75.64%), Postives = 240/312 (76.92%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVP+SIVSDRDPRFTSK WPSLQKAMGTGLKFSTSFHPQT
Sbjct: 1   MTSTLDQLARLYVDKIVSQYGVPMSIVSDRDPRFTSKVWPSLQKAMGTGLKFSTSFHPQT 60

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVL+LKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 61  DGQSERTIQTLEDMLRACVLRLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 121 PVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 180

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPI+LARIHDVFHVSMLRKYI
Sbjct: 181 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIKLARIHDVFHVSMLRKYI 240

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTI LIKV WRHHGAEEATWEPE
Sbjct: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIQLIKVFWRHHGAEEATWEPE 300

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy TrEMBL
Match: A0A5A7U743 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00500 PE=4 SV=1)

HSP 1 Score: 456 bits (1174), Expect = 1.49e-160
Identity = 237/312 (75.96%), Postives = 238/312 (76.28%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQK MGT LKFSTSFHPQT
Sbjct: 1   MTSTLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKTMGTRLKFSTSFHPQT 60

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 121 PVCWNEVGERKLVGPELVQITTSNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 180

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI
Sbjct: 181 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLR KTI LIKVLWRHHGAEEATWEPE
Sbjct: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRKKTILLIKVLWRHHGAEEATWEPE 300

[Close]

BLAST of MELO.jh102200.1 vs. ExPASy TrEMBL
Match: A0A5A7UVJ8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G002160 PE=4 SV=1)

HSP 1 Score: 471 bits (1211), Expect = 3.42e-159
Identity = 242/312 (77.56%), Postives = 243/312 (77.88%), Query Frame = 0


Query: 1   MTTTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 60
           MT+TLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT
Sbjct: 497 MTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQT 556

Query: 61  DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 120
           DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT
Sbjct: 557 DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRT 616

Query: 121 PVCWNEVGERKLVGPEL------------------------------------------- 180
           PVCWNEVGERKLVGPEL                                           
Sbjct: 617 PVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFL 676

Query: 181 --------------------------ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 240
                                     ITERVGPAAYRLELPIELARIHDVFHVSMLRKYI
Sbjct: 677 KLSPWRGVIRFGRKGKLSPRYIGPYQITERVGPAAYRLELPIELARIHDVFHVSMLRKYI 736

Query: 241 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 243
           PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE
Sbjct: 737 PDPSHVLQDQPVELKEDLSYVEEPVQILDRKEQVLRNKTIPLIKVLWRHHGAEEATWEPE 796

[Close]

BLAST of MELO.jh102200.1 vs. TAIR 10
Match: AT1G42190.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 42.0 bits (97), Expect = 8.4e-04
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 147 YRLELPIELARIHDVFHVSMLRKYIPDPSHVLQDQPVELKEDLSYV 193
           Y+L+LP  +   H VFHVSMLRK I    +V+ + P +L E++  V
Sbjct: 2   YKLDLPTLMDAFHKVFHVSMLRKCITHQENVISEPPPDLLENMMIV 47

The following BLAST results are available for this feature:

BLAST of MELO.jh102200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066351.1	2.28e-162	75.96	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0053246.1	2.36e-161	77.56	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0039736.1	2.65e-161	75.64	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0051020.1	3.09e-160	75.96	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0059912.1	7.07e-159	77.56	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh102200.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	1.2e-18	42.03	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	3.4e-18	41.30	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.9e-17	36.04	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.9e-17	36.04	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.9e-17	36.04	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO.jh102200.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VL47	1.10e-162	75.96	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UGA0	1.14e-161	77.56	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TCE6	1.28e-161	75.64	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U743	1.49e-160	75.96	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26...	[more]
A0A5A7UVJ8	3.42e-159	77.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]

BLAST of MELO.jh102200.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42190.1	8.4e-04	43.48	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..133 e-value: 4.4E-35 score: 122.8
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 71..238
None	No IPR available	PANTHER	PTHR46148:SF18	IPP TRANSFERASE	coord: 71..238
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..117 score: 15.693575
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..111
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 156..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102200.1.t1	MELO.jh102200.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding