MELO.jh101613.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101613.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Gag protease polyprotein
Location	chr05: 10212877 .. 10214433 (-)
RNA-Seq Expression	MELO.jh101613.1
Synteny	MELO.jh101613.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGGAGCAGCAGGCTCGCCGCAACTCCGGCGCCAGCCCAGGCGCCAGACCAGCTCTCGCCCCCTCCGGCCCGGTGCCACCCCAGCCGTGCCTGATCAGCTTGTCGGAGGCTAAGCACCTGAGGGATTTCAGGAAGTATAATCCCACGACGTTTGATGGGTCTTTGGAGGACCCCACCAGAGCTCAGATGTGGCTATCGTCCTTGGAGACCATATTCCGTTACATGAAATGCCCCGAGGATCGAAAGTTCAGTGTTTTTATGATGACGAGAGGTACCGCGTGGGAGACTACAGAGAGGATGCTAGGTGGTGATGTGAGTCAGATCACGTGGCAGCAGTTCAAGGAGAGTTTCTATGCGAAATTCTTCTCTGCCAGTTTGAGAGATGCCAAGCGGCAGGAGTTTCTGAACTTAGAGCAGGGTGACATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACCGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCAGACTGGACATTCAGGGTTTGGTCCGAGCTTTCAGACCCGCTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCCAACTCGTCTAAGACCGCTGGTAGAGGTTCGACGTCGGGACAGAAGAGGAAGGCTGAGCAGCAGCCTTTTCCATTGCCACAGGGGAATTTCAAACCAGGTGGTGAGTTTCGCAGCTTCCAGCAGAAACCTTTTGAGGCAGGGGAGGCTGCCAGAGGAAAGCCGTTGTGTACCACTTGTGGGAAGCACCATCTGGGCCGTTGCTTATTCGGGACCAGGACCTGCTTTAAGTGCAGGCAAGAGGGTCATACAGCTGATAGATGCCCGTTGAGAGTCACGGGGATCGCGCAGAATCAGGGAGCAGGTGCTCCACATCAGGGTAGAGTCTTTGCTACCAACAGGACTGAGGCTGAGAAGGCAGGCACAGTAGTGACAGGTACGCTCCCAGTGTTGGGGCATTACGCCTTAGTTTTGTTTGATTCGGGTTCGTCACATTCTTTTATCTCTTCCGCATTTGTGTCGCATGCCCGCTTAGAGGTAGAGCCCTTACACCATGTTCTATCAGTATCTACTCCTTCCGGGGAATGTATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGGGGTAACGTTGATAGTTCTGGATATGCTGGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCCAGCATAGATTGTTCACGTAAGGAGGTAACGTTTAACCCTCCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAAGGTCAAAGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTAACTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCAGTAGTGAGGGACTATCCGGACGTTTTTCCTGAGGAACTTCCAGGGGTTACCTCCGCACAGAGAGGTTGA

mRNA sequence

ATGCGGGAGCAGCAGGCTCGCCGCAACTCCGGCGCCAGCCCAGGCGCCAGACCAGCTCTCGCCCCCTCCGGCCCGGTGCCACCCCAGCCGTGCCTGATCAGCTTGTCGGAGGCTAAGCACCTGAGGGATTTCAGGAAGTATAATCCCACGACGTTTGATGGGTCTTTGGAGGACCCCACCAGAGCTCAGATGTGGCTATCGTCCTTGGAGACCATATTCCGTTACATGAAATGCCCCGAGGATCGAAAGTTCAGTGTTTTTATGATGACGAGAGGTACCGCGTGGGAGACTACAGAGAGGATGCTAGGTGGTGATGTGAGTCAGATCACGTGGCAGCAGTTCAAGGAGAGTTTCTATGCGAAATTCTTCTCTGCCAGTTTGAGAGATGCCAAGCGGCAGGAGTTTCTGAACTTAGAGCAGGGTGACATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACCGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCAGACTGGACATTCAGGGTTTGGTCCGAGCTTTCAGACCCGCTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCCAACTCGTCTAAGACCGCTGGTAGAGGTTCGACGTCGGGACAGAAGAGGAAGGCTGAGCAGCAGCCTTTTCCATTGCCACAGGGGAATTTCAAACCAGGTGGTGAGTTTCGCAGCTTCCAGCAGAAACCTTTTGAGGCAGGGGAGGCTGCCAGAGGAAAGCCGTTGTGTACCACTTGTGGGAAGCACCATCTGGGCCGTTGCTTATTCGGGACCAGGACCTGCTTTAAGTGCAGGCAAGAGGGTCATACAGCTGATAGATGCCCGTTGAGAGTCACGGGGATCGCGCAGAATCAGGGAGCAGGTGCTCCACATCAGGGTAGAGTCTTTGCTACCAACAGGACTGAGGCTGAGAAGGCAGGCACAGTAGTGACAGGTACGCTCCCAGTGTTGGGGCATTACGCCTTAGTTTTGTTTGATTCGGGTTCGTCACATTCTTTTATCTCTTCCGCATTTGTGTCGCATGCCCGCTTAGAGGTAGAGCCCTTACACCATGTTCTATCAGTATCTACTCCTTCCGGGGAATGTATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGGGGTAACGTTGATAGTTCTGGATATGCTGGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCCAGCATAGATTGTTCACGTAAGGAGGTAACGTTTAACCCTCCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAAGGTCAAAGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTAACTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCAGTAGTGAGGGACTATCCGGACGTTTTTCCTGAGGAACTTCCAGGGGTTACCTCCGCACAGAGAGGTTGA

Coding sequence (CDS)

ATGCGGGAGCAGCAGGCTCGCCGCAACTCCGGCGCCAGCCCAGGCGCCAGACCAGCTCTCGCCCCCTCCGGCCCGGTGCCACCCCAGCCGTGCCTGATCAGCTTGTCGGAGGCTAAGCACCTGAGGGATTTCAGGAAGTATAATCCCACGACGTTTGATGGGTCTTTGGAGGACCCCACCAGAGCTCAGATGTGGCTATCGTCCTTGGAGACCATATTCCGTTACATGAAATGCCCCGAGGATCGAAAGTTCAGTGTTTTTATGATGACGAGAGGTACCGCGTGGGAGACTACAGAGAGGATGCTAGGTGGTGATGTGAGTCAGATCACGTGGCAGCAGTTCAAGGAGAGTTTCTATGCGAAATTCTTCTCTGCCAGTTTGAGAGATGCCAAGCGGCAGGAGTTTCTGAACTTAGAGCAGGGTGACATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACCGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCAGACTGGACATTCAGGGTTTGGTCCGAGCTTTCAGACCCGCTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCCAACTCGTCTAAGACCGCTGGTAGAGGTTCGACGTCGGGACAGAAGAGGAAGGCTGAGCAGCAGCCTTTTCCATTGCCACAGGGGAATTTCAAACCAGGTGGTGAGTTTCGCAGCTTCCAGCAGAAACCTTTTGAGGCAGGGGAGGCTGCCAGAGGAAAGCCGTTGTGTACCACTTGTGGGAAGCACCATCTGGGCCGTTGCTTATTCGGGACCAGGACCTGCTTTAAGTGCAGGCAAGAGGGTCATACAGCTGATAGATGCCCGTTGAGAGTCACGGGGATCGCGCAGAATCAGGGAGCAGGTGCTCCACATCAGGGTAGAGTCTTTGCTACCAACAGGACTGAGGCTGAGAAGGCAGGCACAGTAGTGACAGGTACGCTCCCAGTGTTGGGGCATTACGCCTTAGTTTTGTTTGATTCGGGTTCGTCACATTCTTTTATCTCTTCCGCATTTGTGTCGCATGCCCGCTTAGAGGTAGAGCCCTTACACCATGTTCTATCAGTATCTACTCCTTCCGGGGAATGTATGTTGTCGAAGGAAAAGGTGAAAGCATGCCAGATTGAGATAGCAGGCCATGTGATTGGGGTAACGTTGATAGTTCTGGATATGCTGGACTTTGATGTAATCCTGGGTATGGATTGGTTGGCCGCTAACCACGCCAGCATAGATTGTTCACGTAAGGAGGTAACGTTTAACCCTCCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAAGGTCAAAGTCGTTGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTAACTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCAGAACCAGTAGTGAGGGACTATCCGGACGTTTTTCCTGAGGAACTTCCAGGGGTTACCTCCGCACAGAGAGGTTGA

Protein sequence

MREQQARRNSGASPGARPALAPSGPVPPQPCLISLSEAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDRKFSVFMMTRGTAWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRASKLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGVTSAQRG

Homology

[Close]

BLAST of MELO.jh101613.1 vs. NCBI nr
Match: TYK01613.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 920 bits (2377), Expect = 0.0
Identity = 477/524 (91.03%), Postives = 488/524 (93.13%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAP-----SGPVPPQPCLIS---LSEAKHLRDFRKYNPTTF 60
           MREQQ   +   +P   PA AP       PVP  P  +     +EAKHLRDFRKYNPTTF
Sbjct: 285 MREQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTF 344

Query: 61  DGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDVSQ 120
           DGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDVSQ
Sbjct: 345 DGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQ 404

Query: 121 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 180
           ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA
Sbjct: 405 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 464

Query: 181 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 240
           RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 465 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 524

Query: 241 QQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 300
           QQP P+PQ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ
Sbjct: 525 QQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 584

Query: 301 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 360
           EGHTADRCPLR+TGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD
Sbjct: 585 EGHTADRCPLRLTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 644

Query: 361 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 420
           SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VTLI
Sbjct: 645 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLI 704

Query: 421 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRAS 480
           VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIRAS
Sbjct: 705 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRAS 764

Query: 481 KLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           KLLSQGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 765 KLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 808

[Close]

BLAST of MELO.jh101613.1 vs. NCBI nr
Match: KAA0054678.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 920 bits (2377), Expect = 0.0
Identity = 477/524 (91.03%), Postives = 489/524 (93.32%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAP-----SGPVPPQPCLIS---LSEAKHLRDFRKYNPTTF 60
           MREQQ   +   +P   PA AP       PVP  P  +     +EAKHLRDFRKYNPTTF
Sbjct: 58  MREQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFMPDQLSAEAKHLRDFRKYNPTTF 117

Query: 61  DGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTA-WETTERMLGGDVSQ 120
           DGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTA WETTERMLGGDVSQ
Sbjct: 118 DGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTARWETTERMLGGDVSQ 177

Query: 121 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 180
           ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA
Sbjct: 178 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 237

Query: 181 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 240
           RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 238 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 297

Query: 241 QQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 300
           QQP P+PQ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ
Sbjct: 298 QQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 357

Query: 301 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 360
           EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD
Sbjct: 358 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 417

Query: 361 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 420
           SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI
Sbjct: 418 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 477

Query: 421 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRAS 480
           VLDMLDFDVILGMDWLAANHASIDCSRKEVTF+PPSMASFKFKGG SKSLP+VISAIRAS
Sbjct: 478 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFHPPSMASFKFKGGGSKSLPRVISAIRAS 537

Query: 481 KLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           KLLSQGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 538 KLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 581

[Close]

BLAST of MELO.jh101613.1 vs. NCBI nr
Match: ADN33767.1 (gag protease polyprotein, partial [Cucumis melo subsp. melo])

HSP 1 Score: 915 bits (2365), Expect = 0.0
Identity = 475/520 (91.35%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAPS-GPVPPQPCLIS---LSEAKHLRDFRKYNPTTFDGSL 60
           MREQQ   +   +P   P  AP+  PVP  P  +     +EAKHLRDFRKYNPTTFDGSL
Sbjct: 288 MREQQKPASPTPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSL 347

Query: 61  EDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDVSQITWQ 120
           EDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDVSQITWQ
Sbjct: 348 EDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQ 407

Query: 121 QFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADK 180
           QFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADK
Sbjct: 408 QFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADK 467

Query: 181 FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPF 240
           FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQP 
Sbjct: 468 FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPV 527

Query: 241 PLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHT 300
           P+PQ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHT
Sbjct: 528 PVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHT 587

Query: 301 ADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSS 360
           ADRCPLR TGIAQNQGAGAP QGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSS
Sbjct: 588 ADRCPLRPTGIAQNQGAGAPLQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSS 647

Query: 361 HSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLIVLDM 420
           HSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VTLIVLDM
Sbjct: 648 HSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLIVLDM 707

Query: 421 LDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRASKLLS 480
           LDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIRASKLLS
Sbjct: 708 LDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLS 767

Query: 481 QGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           QGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 768 QGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 807

[Close]

BLAST of MELO.jh101613.1 vs. NCBI nr
Match: KAA0038231.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 914 bits (2363), Expect = 0.0
Identity = 474/524 (90.46%), Postives = 487/524 (92.94%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAP-----SGPVPPQPCLIS---LSEAKHLRDFRKYNPTTF 60
           MREQQ   +   +P   PA AP       PVP  P  +     +EAKHLRDFRKYNPTTF
Sbjct: 5   MREQQKPASPTPAPAPAPAPAPIPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTF 64

Query: 61  DGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDVSQ 120
           DGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDVSQ
Sbjct: 65  DGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQ 124

Query: 121 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 180
           ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA
Sbjct: 125 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 184

Query: 181 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 240
           RADKFV+GLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 185 RADKFVKGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 244

Query: 241 QQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 300
           QQP P+P+ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ
Sbjct: 245 QQPVPVPRRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 304

Query: 301 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 360
           EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVV+GTLPVLGHYALVLFD
Sbjct: 305 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVSGTLPVLGHYALVLFD 364

Query: 361 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 420
           SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VTLI
Sbjct: 365 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLI 424

Query: 421 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRAS 480
           VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIRAS
Sbjct: 425 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRAS 484

Query: 481 KLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           KLLSQGTW  LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 485 KLLSQGTWAILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 528

[Close]

BLAST of MELO.jh101613.1 vs. NCBI nr
Match: KAA0053290.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 912 bits (2357), Expect = 0.0
Identity = 474/526 (90.11%), Postives = 487/526 (92.59%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAPS-------GPVPPQPCLIS---LSEAKHLRDFRKYNPT 60
           MREQQ  + +  +P   PA AP+        PVP  P L+     +EAKHLRDFRKYNPT
Sbjct: 58  MREQQ--KPASPTPAPAPAPAPARVPAPAPAPVPVAPQLVPDQLSAEAKHLRDFRKYNPT 117

Query: 61  TFDGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDV 120
           TFDGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDV
Sbjct: 118 TFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDV 177

Query: 121 SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE 180
           SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE
Sbjct: 178 SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE 237

Query: 181 AARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRK 240
           AARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGR STSGQKRK
Sbjct: 238 AARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRDSTSGQKRK 297

Query: 241 AEQQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKC 300
           AEQQP P+PQ NF+PGGEFRSFQQKPFE GEAARGKPLCTTCGKHHLGRCLFGTRTCFKC
Sbjct: 298 AEQQPVPVPQRNFRPGGEFRSFQQKPFETGEAARGKPLCTTCGKHHLGRCLFGTRTCFKC 357

Query: 301 RQEGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVL 360
           RQEGHTADRCPLRVTGIAQNQGAG PHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVL
Sbjct: 358 RQEGHTADRCPLRVTGIAQNQGAGVPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVL 417

Query: 361 FDSGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVT 420
           FDSGSSHSFISSAFV+HARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VT
Sbjct: 418 FDSGSSHSFISSAFVAHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVT 477

Query: 421 LIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIR 480
           LIVLDMLDFDVILGMDWLA NHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIR
Sbjct: 478 LIVLDMLDFDVILGMDWLAVNHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIR 537

Query: 481 ASKLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           ASKLLSQGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 538 ASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 581

[Close]

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL
Match: A0A5A7UI54 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004990 PE=4 SV=1)

HSP 1 Score: 920 bits (2377), Expect = 0.0
Identity = 477/524 (91.03%), Postives = 489/524 (93.32%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAP-----SGPVPPQPCLIS---LSEAKHLRDFRKYNPTTF 60
           MREQQ   +   +P   PA AP       PVP  P  +     +EAKHLRDFRKYNPTTF
Sbjct: 58  MREQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFMPDQLSAEAKHLRDFRKYNPTTF 117

Query: 61  DGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTA-WETTERMLGGDVSQ 120
           DGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTA WETTERMLGGDVSQ
Sbjct: 118 DGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTARWETTERMLGGDVSQ 177

Query: 121 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 180
           ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA
Sbjct: 178 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 237

Query: 181 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 240
           RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 238 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 297

Query: 241 QQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 300
           QQP P+PQ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ
Sbjct: 298 QQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 357

Query: 301 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 360
           EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD
Sbjct: 358 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 417

Query: 361 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 420
           SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI
Sbjct: 418 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 477

Query: 421 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRAS 480
           VLDMLDFDVILGMDWLAANHASIDCSRKEVTF+PPSMASFKFKGG SKSLP+VISAIRAS
Sbjct: 478 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFHPPSMASFKFKGGGSKSLPRVISAIRAS 537

Query: 481 KLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           KLLSQGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 538 KLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 581

[Close]

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 920 bits (2377), Expect = 0.0
Identity = 477/524 (91.03%), Postives = 488/524 (93.13%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAP-----SGPVPPQPCLIS---LSEAKHLRDFRKYNPTTF 60
           MREQQ   +   +P   PA AP       PVP  P  +     +EAKHLRDFRKYNPTTF
Sbjct: 285 MREQQKPASPTPAPAPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTF 344

Query: 61  DGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDVSQ 120
           DGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDVSQ
Sbjct: 345 DGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQ 404

Query: 121 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 180
           ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA
Sbjct: 405 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 464

Query: 181 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 240
           RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 465 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 524

Query: 241 QQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 300
           QQP P+PQ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ
Sbjct: 525 QQPVPVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 584

Query: 301 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 360
           EGHTADRCPLR+TGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD
Sbjct: 585 EGHTADRCPLRLTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 644

Query: 361 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 420
           SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VTLI
Sbjct: 645 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLI 704

Query: 421 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRAS 480
           VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIRAS
Sbjct: 705 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRAS 764

Query: 481 KLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           KLLSQGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 765 KLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 808

[Close]

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL
Match: E5GBB7 (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 915 bits (2365), Expect = 0.0
Identity = 475/520 (91.35%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAPS-GPVPPQPCLIS---LSEAKHLRDFRKYNPTTFDGSL 60
           MREQQ   +   +P   P  AP+  PVP  P  +     +EAKHLRDFRKYNPTTFDGSL
Sbjct: 288 MREQQKPASPTPAPAPAPVPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFDGSL 347

Query: 61  EDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDVSQITWQ 120
           EDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDVSQITWQ
Sbjct: 348 EDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQ 407

Query: 121 QFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADK 180
           QFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADK
Sbjct: 408 QFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADK 467

Query: 181 FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPF 240
           FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQP 
Sbjct: 468 FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPV 527

Query: 241 PLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHT 300
           P+PQ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHT
Sbjct: 528 PVPQRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHT 587

Query: 301 ADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSS 360
           ADRCPLR TGIAQNQGAGAP QGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSS
Sbjct: 588 ADRCPLRPTGIAQNQGAGAPLQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSS 647

Query: 361 HSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLIVLDM 420
           HSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VTLIVLDM
Sbjct: 648 HSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLIVLDM 707

Query: 421 LDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRASKLLS 480
           LDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIRASKLLS
Sbjct: 708 LDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLS 767

Query: 481 QGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           QGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 768 QGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 807

[Close]

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL
Match: A0A5A7T9B7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00730 PE=4 SV=1)

HSP 1 Score: 914 bits (2363), Expect = 0.0
Identity = 474/524 (90.46%), Postives = 487/524 (92.94%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAP-----SGPVPPQPCLIS---LSEAKHLRDFRKYNPTTF 60
           MREQQ   +   +P   PA AP       PVP  P  +     +EAKHLRDFRKYNPTTF
Sbjct: 5   MREQQKPASPTPAPAPAPAPAPIPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTF 64

Query: 61  DGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDVSQ 120
           DGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDVSQ
Sbjct: 65  DGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQ 124

Query: 121 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 180
           ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA
Sbjct: 125 ITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAA 184

Query: 181 RADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 240
           RADKFV+GLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 185 RADKFVKGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE 244

Query: 241 QQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 300
           QQP P+P+ NF+PGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ
Sbjct: 245 QQPVPVPRRNFRPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQ 304

Query: 301 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVLFD 360
           EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVV+GTLPVLGHYALVLFD
Sbjct: 305 EGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVSGTLPVLGHYALVLFD 364

Query: 361 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVTLI 420
           SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VTLI
Sbjct: 365 SGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLI 424

Query: 421 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIRAS 480
           VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIRAS
Sbjct: 425 VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRAS 484

Query: 481 KLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           KLLSQGTW  LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 485 KLLSQGTWAILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 528

[Close]

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL
Match: A0A5A7UDK9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001010 PE=4 SV=1)

HSP 1 Score: 912 bits (2357), Expect = 0.0
Identity = 474/526 (90.11%), Postives = 487/526 (92.59%), Query Frame = 0


Query: 1   MREQQARRNSGASPGARPALAPS-------GPVPPQPCLIS---LSEAKHLRDFRKYNPT 60
           MREQQ  + +  +P   PA AP+        PVP  P L+     +EAKHLRDFRKYNPT
Sbjct: 58  MREQQ--KPASPTPAPAPAPAPARVPAPAPAPVPVAPQLVPDQLSAEAKHLRDFRKYNPT 117

Query: 61  TFDGSLEDPTRAQMWLSSLETIFRYMKCPEDRKF--SVFMMT-RGTAW-ETTERMLGGDV 120
           TFDGSLEDPTRAQMWLSSLETIFRYMKCPED+K   +VFM+T RGTAW ETTERMLGGDV
Sbjct: 118 TFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDV 177

Query: 121 SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE 180
           SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE
Sbjct: 178 SQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE 237

Query: 181 AARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRK 240
           AARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGR STSGQKRK
Sbjct: 238 AARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRDSTSGQKRK 297

Query: 241 AEQQPFPLPQGNFKPGGEFRSFQQKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKC 300
           AEQQP P+PQ NF+PGGEFRSFQQKPFE GEAARGKPLCTTCGKHHLGRCLFGTRTCFKC
Sbjct: 298 AEQQPVPVPQRNFRPGGEFRSFQQKPFETGEAARGKPLCTTCGKHHLGRCLFGTRTCFKC 357

Query: 301 RQEGHTADRCPLRVTGIAQNQGAGAPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVL 360
           RQEGHTADRCPLRVTGIAQNQGAG PHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVL
Sbjct: 358 RQEGHTADRCPLRVTGIAQNQGAGVPHQGRVFATNRTEAEKAGTVVTGTLPVLGHYALVL 417

Query: 361 FDSGSSHSFISSAFVSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIGVT 420
           FDSGSSHSFISSAFV+HARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVI VT
Sbjct: 418 FDSGSSHSFISSAFVAHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVT 477

Query: 421 LIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGRSKSLPQVISAIR 480
           LIVLDMLDFDVILGMDWLA NHASIDCSRKEVTFNPPSMASFKFKGG SKSLPQVISAIR
Sbjct: 478 LIVLDMLDFDVILGMDWLAVNHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIR 537

Query: 481 ASKLLSQGTWGNLASVVDTREADVSLSSEPVVRDYPDVFPEELPGV 512
           ASKLLSQGTWG LASVVDTREADVSLSSEPVVRDYPDVFPEELPG+
Sbjct: 538 ASKLLSQGTWGILASVVDTREADVSLSSEPVVRDYPDVFPEELPGL 581

The following BLAST results are available for this feature:

BLAST of MELO.jh101613.1 vs. NCBI nr


Match Name	Identity	Description
TYK01613.1	91.03	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054678.1	91.03	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
ADN33767.1	91.35	gag protease polyprotein, partial [Cucumis melo subsp. melo]	[more]
KAA0038231.1	90.46	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053290.1	90.11	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh101613.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A5A7UI54	91.03	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BPI1	91.03	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]
E5GBB7	91.35	Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 S...	[more]
A0A5A7T9B7	90.46	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7UDK9	90.11	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of MELO.jh101613.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 96..178 e-value: 8.0E-14 score: 51.7
None	No IPR available	PFAM	PF08284	RVP_2	coord: 314..442 e-value: 2.2E-43 score: 147.3
None	No IPR available	GENE3D	4.10.60.10		coord: 209..303 e-value: 2.1E-5 score: 26.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..227
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 333..511
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 333..511
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 360..425 e-value: 9.47134E-12 score: 59.2724
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 319..449 e-value: 4.9E-23 score: 83.4
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 336..432
IPR001969	Aspartic peptidase, active site	PROSITE	PS00141	ASP_PROTEASE	coord: 345..356
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 283..297 score: 9.438442
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 279..303

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101613.1.t1	MELO.jh101613.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding