MELO.jh101024.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh101024.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr01: 19184553 .. 19187546 (-)
RNA-Seq ExpressionMELO.jh101024.1
SyntenyMELO.jh101024.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTGCTCATACTTAGTTCAAGATCTCCTGGTAGGAAAATTGATGTTTACCTACTACTGTTGATTAAGGAATTGAAAGAGTTATGGACTTCTGGTGTGCATACTTATGATTCTCTTACCGGTCAGTTCTTTCAATTGTATGCAGCCTTGTTGTGGACTATTAATGACTTCCCAGTGTATGTATGGTGACTTTTCTAGGTGGAGTACGAAAAACTATCAGGCATGTCCTAAATGCATGGGAGATAAATCACCATTCAAGATAAGAGGGAAAATATCTTTTGTGGGAAATCAGCATTATCTTTCAGAGAACAACATTTGGCCTACAAGTAAGCTACATGATGGAAAGGTAGAGCGTATCGCTCCTCCTGTTGTAAAGAATGAGCATGAAATCTTAGAACAACTAGATTCGTTGAATTTTCTAGTTATGAGTGAATATCCTTCACTGAAAAATAAGAAAAGATAGCAAGCTCTCAATTGAACTAAGAGAAGTATCTTTTTCGAACTTCCTTATTGATCAAGACTACTATTAGATAATAAATTGGATGTAATGCATATTGAAAAGAATGTTTGTGACAATTTGGTTGGTACGTTGTTGAATATTGAAGGTAAAATGAAAGATACCACGAATGCTCGATTGGATCTTTAAGATGCTCGGTTGGACCTTCAAGATTTGAAAATAAGAAAGGATTTACACCTAATAGAAGTTGGTAACATATTAGTGAAGCCACAAGTAAGTTATATGTTGACTAGCAGCGAGCGAGTTGTGTTTTGCAAGTATTTGAAATCAATTAAGTTACTCGATGAATTCGTTTTTAATATCTCACGATGTGTGAACAACAGAGACAAGAAAATATCAGGTCTTAAAACACACGACTGTCATGTTTTGCTACATCGACTTCTCCCTATTGGTGTTCGAGCATATTTACCAAAAAAATGTATTCATTGCTGTTATTGAATTGTGTGATTTTTTTCGTGACTTGTGTGTAAGAACATAAGAATAAGTGATTCAGATCGATTGCAATCAGATATCATAATCATAATTTATAAGTTTGAAAGAATATACTTCCACCTGCCTTTTTCGACATAATGATACACCTTCGTGTTCACCTACCATATGAAATCAAAGTTGTTAGTCTGGTCTTTTATAGTTGGATGTATCCCATTGAAAGAAGTCTACATACATTAAAATAATTTGTTCGAAACAAAGCACGTATTGAGTGGTCTATTGCAGAAGCATATGCGATAAATGAATTAGAGACTTTTTGTTTGAGATATATAAGTGGGAATGAAACTCGATTCACTAGAGATGAATGAAATGATGATAGCATTCCTAATGAAGAGATAATTAGTGGTTTTGAAGTGTTAATTTAGAAAGTATGACCATTAGAGACATCAAGTTTACGAACTCTATTACAAAAAGAGAAATGGCTTGCACATTGGTACATCTTCAACAATGTAGATGAAATAGCGGACTACCGTAGGTATGCATTTTCAACTTTATACTTTACTTCCTATTATTAGTATTTGTTATTGTCATCACAGAAACTCACAATTATCTACTTTAGGAAACACTTAAGGTTGATACGACATCAAGCTCAAAGTGCTTCTGACTTATATAAAAGACATGAACGAGCATTTCTTGATTAGTTCAAAGCTCCCATATATAGCGGACATGAATTTGAGAATTTGTATATCTTACTTAAGAATTATATATATTCATTTACATCAATTTCAAGTTCTAGATTGGCATGAGAGAGAAAACTTTTCTCATGATTTTTCTCACTTGCAATTGGACCTTCATCTGAGGATCGTTCTTACAGTGGATGCATTGTCGGTGGGATACAATTTAATAGAGTAGAGCATGATTTTCGACTTACTATACAAAATAGTGGAGTCACGGTAGTTGGTGAAAACAGTGACAGTGGAAGTGCCAACAACAATTTCTACGGTATTTTTAGATAAAGTGTTTGGATGTTCAATATCTGTTGGGACCATGTGTTTGACTATTCAAGTGTAGATGGTTTGACACCAAAAGCTTCAAAAACCATAGGACACACATGGAATTAGGCTACAAATCAATCAACACATCGCATTTTTGGTTCCTTGAGTATCGGTCATTCTCTCGAGCCAGACACATCAAGTCTTTTTCCTTGAGGACCTAGAAATGGTACTAATTGGAAGGTTTTTCAAGTAGTCCAAAATAAATATACATGGAATATCCCCAAAGTGGAGGATGTTGAGAACGAGAAATTGAATGTATTGGAAATCATTGTCGAACATCGTGTGGATGAACACATTGAGGATGAAACTCTATGCAGGCGTAATGTTGATCTTATACTGGTGGAAAGACCGATTATGCATCATGTCCTTGACGACTTCATAAACGATGATGATGAACAATTGTCACCTCAAAGTGGATCAACCGACGACAAATAGTAATTATGAATCATGTATCCATATGTTTTATTTTTTTATATATTCAATTTGAGATACTCTCATTTGTTTAATGAATTTTGGTTTTTATGTTCACAGGTATTATGTCATCATTCACCAGCGGTTTCCAGGAGATAGATAAACCCTAAACCCTAAACATGGATTTTTATTTCTAATAGTGTTCTATTTTCTTAGATGCTTCTCAACCACTTGCACTTCCAAAACTTGAAGTTGAAGAGACGTAAGAAGAATGGGAAGATTCCAATCTCCATTGCCCTAGGAGCAGAGAAGCCAATCTCGCCATATGTTATTCGGTTCAGCAACACTATCAGTATATTAACGCGAGATACATTTCTAGTTCGCTTCCTTAAGTGGGCTGATGTTCCTTCGAAGTATATCGAGGTTGTCATGAGGCGGTATACAGGTAAATTTATAAATTACTTTACATATATGTTAAATCTATGTACACATAAATATTTAATCCGTATTTTCTTTCCTTTGTAGCAATTGTGCGTGCTTGATTTCACAGATCAGTGCGTGCTTGATTTCACCGATTAA

mRNA sequence

ATGTCATTGCTCATACTTAGTTCAAGATCTCCTGGTAGGAAAATTGATGTTTACCTACTACTGTTGATTAAGGAATTGAAAGAGTTATGGACTTCTGGTGTGCATACTTATGATTCTCTTACCGGTCAGTTCTTTCAATTGTATGCAGCCTTGTTGTGGACTATTAATGACTTCCCAGTGTATATGCTTCTCAACCACTTGCACTTCCAAAACTTGAAGTTGAAGAGACGTAAGAAGAATGGGAAGATTCCAATCTCCATTGCCCTAGGAGCAGAGAAGCCAATCTCGCCATATGTTATTCGGTTCAGCAACACTATCAGTATATTAACGCGAGATACATTTCTAGTTCGCTTCCTTAAGTGGGCTGATGTTCCTTCGAAGTATATCGAGGTTGTCATGAGGCGGTATACAGATCAGTGCGTGCTTGATTTCACCGATTAA

Coding sequence (CDS)

ATGTCATTGCTCATACTTAGTTCAAGATCTCCTGGTAGGAAAATTGATGTTTACCTACTACTGTTGATTAAGGAATTGAAAGAGTTATGGACTTCTGGTGTGCATACTTATGATTCTCTTACCGGTCAGTTCTTTCAATTGTATGCAGCCTTGTTGTGGACTATTAATGACTTCCCAGTGTATATGCTTCTCAACCACTTGCACTTCCAAAACTTGAAGTTGAAGAGACGTAAGAAGAATGGGAAGATTCCAATCTCCATTGCCCTAGGAGCAGAGAAGCCAATCTCGCCATATGTTATTCGGTTCAGCAACACTATCAGTATATTAACGCGAGATACATTTCTAGTTCGCTTCCTTAAGTGGGCTGATGTTCCTTCGAAGTATATCGAGGTTGTCATGAGGCGGTATACAGATCAGTGCGTGCTTGATTTCACCGATTAA

Protein sequence

MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPVYMLLNHLHFQNLKLKRRKKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLKWADVPSKYIEVVMRRYTDQCVLDFTD
Homology
BLAST of MELO.jh101024.1 vs. NCBI nr
Match: KAA0043440.1 (uncharacterized protein E6C27_scaffold1639G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (336), Expect = 2.16e-34
Identity = 79/146 (54.11%), Postives = 88/146 (60.27%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPV 60
           MSLLI   RS GR+IDVYL  LI+ELKELWT GVHTYD  T QFFQLYA LLW INDFP 
Sbjct: 85  MSLLIPYPRSLGREIDVYLQPLIEELKELWTFGVHTYDYFTCQFFQLYAVLLWMINDFPA 144

Query: 61  YMLLNHLHFQNLKLKRRKKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLK 120
           Y         +L     K           GAEKPISP+V+RFS  I +  R TF V  LK
Sbjct: 145 Y--------DDLSRWSTKSQWAHSNDDTRGAEKPISPHVVRFSQAIGVCVRKTFSVCCLK 204

Query: 121 WADVPSKYIEVVMRRYTDQCVLDFTD 146
           WA+V  +YI+VV        VLDF D
Sbjct: 205 WANVGREYIKVVKGDLQRFFVLDFND 222

BLAST of MELO.jh101024.1 vs. NCBI nr
Match: KAA0049890.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07628.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 1.29e-28
Identity = 77/183 (42.08%), Postives = 89/183 (48.63%), Query Frame = 0

Query: 17  VYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPVY--------------- 76
           VYL  LIKELKELWT GVHTYDSLTGQFFQL+ ALLWTINDFP Y               
Sbjct: 27  VYLQPLIKELKELWTFGVHTYDSLTGQFFQLHVALLWTINDFPAYGDLSGWSTKGYQACP 86

Query: 77  -----------------------MLLNHL-HFQNL---KLKRRKK--------------- 132
                                  +L NH+ H   L   K++R                  
Sbjct: 87  ICMDDRSSFGIRGRISFMGHRRYLLENHVWHRSRLHDGKIERSSSQPPVTPTPKRHTQSR 146

BLAST of MELO.jh101024.1 vs. NCBI nr
Match: TYK20528.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 6.03e-24
Identity = 77/192 (40.10%), Postives = 93/192 (48.44%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQ---LYAALLWTIND 60
           MSLLI   R   RKIDVYL  LI+ELK+LW  GVHTYDSLT Q F    L   LL T+  
Sbjct: 1   MSLLIPDPRFSDRKIDVYLKPLIEELKQLWCLGVHTYDSLTSQVFSCTLLCYGLLMTLRC 60

Query: 61  FPVY----------------------------MLLNHL---------------------H 120
              Y                            + + H+                     H
Sbjct: 61  MVTYPNGVRKGIIKQAALSTYSKDINRHFLIDLEIRHVISWWHTSDDSQPAAPTPKRRQH 120

Query: 121 FQNLKLKRR-KKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLKWADVPSK 139
            +NL+L R   +NG   ISIA G +KPISP+V+ F NTI +LTRDTF + FLK ADV  +
Sbjct: 121 SRNLELDRYVAQNGMTSISIAPGRDKPISPHVLHFINTIDVLTRDTFPICFLKRADVTLE 180

BLAST of MELO.jh101024.1 vs. NCBI nr
Match: KAA0042917.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 9.94e-23
Identity = 57/92 (61.96%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPV 60
           MSLLI   +SPGR+IDVYL  LI+ELKELWT GV TYDSLTGQFFQLYAALLWTINDFP 
Sbjct: 151 MSLLIPGPKSPGREIDVYLQPLIEELKELWTFGVRTYDSLTGQFFQLYAALLWTINDFPA 210

Query: 61  YMLLNHLHFQNLKLKRRKKNGKIPISIALGAE 92
           Y  L+    +  +L   K   K P  +  G E
Sbjct: 211 YGDLSGWSTKGSRLHDGKVERKAPPVVMNGHE 242

BLAST of MELO.jh101024.1 vs. NCBI nr
Match: KAA0038077.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.13e-22
Identity = 74/183 (40.44%), Postives = 89/183 (48.63%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQ---LYAALLWTIND 60
           MSLLI   R   RKIDVYL  LI+ELK+LW  GVHTYDSLT Q F    L   LL T+  
Sbjct: 1   MSLLIPDPRFSDRKIDVYLKPLIEELKQLWCLGVHTYDSLTSQVFSCTLLCYGLLMTLRC 60

Query: 61  FPVY----------------------------MLLNHL---------------------H 120
              Y                            + + H+                     H
Sbjct: 61  MVTYPNGVRKGIIKQAALSTYSKDINRHFLIDLEIRHVISWWHTSDDSQPAAPTPKRRQH 120

Query: 121 FQNLKLKRR-KKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLKWADVPSK 130
            +NL+L R   +NG   ISIA G +KPISP+V+ F NTI +LTRDTF + FLK ADV  +
Sbjct: 121 SRNLELDRYVAQNGMTSISIAPGRDKPISPHVLHFINTIDVLTRDTFPICFLKRADVTLE 180

BLAST of MELO.jh101024.1 vs. ExPASy TrEMBL
Match: A0A5A7TJI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00520 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.05e-34
Identity = 79/146 (54.11%), Postives = 88/146 (60.27%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPV 60
           MSLLI   RS GR+IDVYL  LI+ELKELWT GVHTYD  T QFFQLYA LLW INDFP 
Sbjct: 85  MSLLIPYPRSLGREIDVYLQPLIEELKELWTFGVHTYDYFTCQFFQLYAVLLWMINDFPA 144

Query: 61  YMLLNHLHFQNLKLKRRKKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLK 120
           Y         +L     K           GAEKPISP+V+RFS  I +  R TF V  LK
Sbjct: 145 Y--------DDLSRWSTKSQWAHSNDDTRGAEKPISPHVVRFSQAIGVCVRKTFSVCCLK 204

Query: 121 WADVPSKYIEVVMRRYTDQCVLDFTD 146
           WA+V  +YI+VV        VLDF D
Sbjct: 205 WANVGREYIKVVKGDLQRFFVLDFND 222

BLAST of MELO.jh101024.1 vs. ExPASy TrEMBL
Match: A0A5D3C8X4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00270 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 6.27e-29
Identity = 77/183 (42.08%), Postives = 89/183 (48.63%), Query Frame = 0

Query: 17  VYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPVY--------------- 76
           VYL  LIKELKELWT GVHTYDSLTGQFFQL+ ALLWTINDFP Y               
Sbjct: 27  VYLQPLIKELKELWTFGVHTYDSLTGQFFQLHVALLWTINDFPAYGDLSGWSTKGYQACP 86

Query: 77  -----------------------MLLNHL-HFQNL---KLKRRKK--------------- 132
                                  +L NH+ H   L   K++R                  
Sbjct: 87  ICMDDRSSFGIRGRISFMGHRRYLLENHVWHRSRLHDGKIERSSSQPPVTPTPKRHTQSR 146

BLAST of MELO.jh101024.1 vs. ExPASy TrEMBL
Match: A0A5D3DAJ0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001110 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 2.92e-24
Identity = 77/192 (40.10%), Postives = 93/192 (48.44%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQ---LYAALLWTIND 60
           MSLLI   R   RKIDVYL  LI+ELK+LW  GVHTYDSLT Q F    L   LL T+  
Sbjct: 1   MSLLIPDPRFSDRKIDVYLKPLIEELKQLWCLGVHTYDSLTSQVFSCTLLCYGLLMTLRC 60

Query: 61  FPVY----------------------------MLLNHL---------------------H 120
              Y                            + + H+                     H
Sbjct: 61  MVTYPNGVRKGIIKQAALSTYSKDINRHFLIDLEIRHVISWWHTSDDSQPAAPTPKRRQH 120

Query: 121 FQNLKLKRR-KKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLKWADVPSK 139
            +NL+L R   +NG   ISIA G +KPISP+V+ F NTI +LTRDTF + FLK ADV  +
Sbjct: 121 SRNLELDRYVAQNGMTSISIAPGRDKPISPHVLHFINTIDVLTRDTFPICFLKRADVTLE 180

BLAST of MELO.jh101024.1 vs. ExPASy TrEMBL
Match: A0A5A7TMA1 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G004390 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 4.81e-23
Identity = 57/92 (61.96%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQLYAALLWTINDFPV 60
           MSLLI   +SPGR+IDVYL  LI+ELKELWT GV TYDSLTGQFFQLYAALLWTINDFP 
Sbjct: 151 MSLLIPGPKSPGREIDVYLQPLIEELKELWTFGVRTYDSLTGQFFQLYAALLWTINDFPA 210

Query: 61  YMLLNHLHFQNLKLKRRKKNGKIPISIALGAE 92
           Y  L+    +  +L   K   K P  +  G E
Sbjct: 211 YGDLSGWSTKGSRLHDGKVERKAPPVVMNGHE 242

BLAST of MELO.jh101024.1 vs. ExPASy TrEMBL
Match: A0A5A7T8Z6 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002880 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.46e-23
Identity = 74/183 (40.44%), Postives = 89/183 (48.63%), Query Frame = 0

Query: 1   MSLLILSSRSPGRKIDVYLLLLIKELKELWTSGVHTYDSLTGQFFQ---LYAALLWTIND 60
           MSLLI   R   RKIDVYL  LI+ELK+LW  GVHTYDSLT Q F    L   LL T+  
Sbjct: 1   MSLLIPDPRFSDRKIDVYLKPLIEELKQLWCLGVHTYDSLTSQVFSCTLLCYGLLMTLRC 60

Query: 61  FPVY----------------------------MLLNHL---------------------H 120
              Y                            + + H+                     H
Sbjct: 61  MVTYPNGVRKGIIKQAALSTYSKDINRHFLIDLEIRHVISWWHTSDDSQPAAPTPKRRQH 120

Query: 121 FQNLKLKRR-KKNGKIPISIALGAEKPISPYVIRFSNTISILTRDTFLVRFLKWADVPSK 130
            +NL+L R   +NG   ISIA G +KPISP+V+ F NTI +LTRDTF + FLK ADV  +
Sbjct: 121 SRNLELDRYVAQNGMTSISIAPGRDKPISPHVLHFINTIDVLTRDTFPICFLKRADVTLE 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043440.12.16e-3454.11uncharacterized protein E6C27_scaffold1639G00520 [Cucumis melo var. makuwa][more]
KAA0049890.11.29e-2842.08CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07628.1 CACTA en-... [more]
TYK20528.16.03e-2440.10CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0042917.19.94e-2361.96putative transposase [Cucumis melo var. makuwa][more]
KAA0038077.11.13e-2240.44(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TJI41.05e-3454.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C8X46.27e-2942.08CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DAJ02.92e-2440.10CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TMA14.81e-2361.96Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G... [more]
A0A5A7T8Z65.46e-2340.44(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004242Transposon, En/Spm-likePFAMPF02992Transposase_21coord: 1..65
e-value: 2.0E-20
score: 72.9
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 1..64
NoneNo IPR availablePANTHERPTHR10775:SF147SUBFAMILY NOT NAMEDcoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh101024.1.t1MELO.jh101024.1.t1mRNA