MELO.jh101018.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101018.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr01: 18672245 .. 18674206 (+)
RNA-Seq Expression	MELO.jh101018.1
Synteny	MELO.jh101018.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAGAAGATCACATGGGAGCAATTCAGGGAGAGCTTTTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGCTGTCCCGCTTTGCTCCCGATATGGTAAGAGACGAGGCCGCCAGATCGAGAGATTTGTTAATGGCCTCAGGTTAGACCTCCAGGGTTTTGTACGAGCTCTTCGACCAACCACTCATGCGGATGCTCTACGCATAGCACTGGATCTGAGCCTGCATGAGAGAGCTGGTCAATCTAAGGTTGTCGGCACAGGGTCAGCCTCGGGACAGAAGAGGAAGGCGGAGGCGCGGCCCGACGTAGTACCACAAAGAGACTGAGGTCGGGAGGTGTCTTCCACACCGCTGAGCCGGGGCAGGGCTGGGAGAATTGAGAGAGCTACCCACTTGTACTACCTGTGGAAGGTCCGAGGACAATGTTTAGCCGGGAGTGGAGTTCGCTTCAGTGCGGCAGGGGCACACCGCTGATGCGTGTCCTCAAACCCTTAGAGACGACGCCACGCCCCTTCCGCTCCCAGGAGGGAGAGTCCCCACGACCCGGGAGGCCGAGCGAGCTAGTACGGTGGTGACAGGTACGCTCCCAATCTTGGGGCATTATGCTTTGGTACTATTTGACTCGGGGTCATCGCATTCATTTATATCCTCTATTTTTGTCAAGCATGCGGGTTTAGAAGTAGAACCGTTGGGTAGTGCCTTGTCTGTCTCTACTCCTTCTGGAGAGGTCCTTTTGTCTAAGGAAAAAATAAGGGCATGTTGGGTAGAAATAGCAAACCATACCTTGAATGTAACTTTACTGGTGCTAGATATGCAAGATTTCGATGTAATTTTAGGCATGGATTGGTTGTCAACTAACCATGCAACCATAGACTGTTTTAATAAGGAAGTAGTCTTTAACCCTCCTTCCGGGGATAAGTTTAAGTTTAGAGGAGCAGGCATGGTAGGTATTCCCAAGGTCATCTCAGCAATGAAGGCGAGTAAGCTACTTAGCCAGGGTACTTGGGGTATCTTGGCGAACGTAGTAGATATGGCAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTAGTAAGGGAGTACCCTGACGTTTTCCCCGACGAACTCCCAGGACTTCCGCCTCCCAGGGAGGTAGACTTCGCCATTGAGTTAGAGCCCGGCACCGCCCCTATCTCTAGAGCTCCCTACAGAATGGCCCCAGCCGAGTTAAAGGAGTTGAAAGTCCAGTTACAGGAGCTGTTGGACAAGGGCTTTATCCGGCCCAGTGTATCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAATTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGAATCGAGGACCTGTTCGACCAGTTACAGGGGGCCACCGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGATATTCCCAAGACGGCCTTTCGTTCGAGGTACGGACACTACGAATTCATAGTGATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGATCTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGAAGGTGACATTTTTAGGGCACGTGGTTTCCAATGAGGAGTCTGGACCCAGCCTAAGGTCGGACGGGACCAACCTGCCTCGACCGTCTACATCGATGAGATTCAGCTCTGGTCCCAGATACTACAGAGGTTTGTAG

mRNA sequence

ATGCCAAAGAAGATCACATGGGAGCAATTCAGGGAGAGCTTTTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGCTGTCCCGCTTTGCTCCCGATATGGGGCACACCGCTGATGCGTGTCCTCAAACCCTTAGAGACGACGCCACGCCCCTTCCGCTCCCAGGAGGGAGAGTCCCCACGACCCGGGAGGCCGAGCGAGCTAGTACGGTGGTGACAGGTACGCTCCCAATCTTGGGGCATTATGCTTTGGTACTATTTGACTCGGGGTCATCGCATTCATTTATATCCTCTATTTTTGTCAAGCATGCGGGTTTAGAAGTAGAACCGTTGGGTAGTGCCTTGTCTGTCTCTACTCCTTCTGGAGAGGTCCTTTTGTCTAAGGAAAAAATAAGGGCATGTTGGGTAGAAATAGCAAACCATACCTTGAATGTAACTTTACTGGTGCTAGATATGCAAGATTTCGATGTAATTTTAGGCATGGATTGGTTGTCAACTAACCATGCAACCATAGACTGTTTTAATAAGGAAGTAGTCTTTAACCCTCCTTCCGGGGATAAGTTTAAGTTTAGAGGAGCAGGCATGGTAGGTATTCCCAAGGTCATCTCAGCAATGAAGGCGAGTAAGCTACTTAGCCAGGGTACTTGGGGTATCTTGGCGAACGTAGTAGATATGGCAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTAGTAAGGGAGTACCCTGACGTTTTCCCCGACGAACTCCCAGGACTTCCGCCTCCCAGGGAGGTAGACTTCGCCATTGAGTTAGAGCCCGGCACCGCCCCTATCTCTAGAGCTCCCTACAGAATGGCCCCAGCCGAGTTAAAGGAGTTGAAAGTCCAGTTACAGGAGCTGTTGGACAAGGGCTTTATCCGGCCCAGTGTATCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAATTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGAATCGAGGACCTGTTCGACCAGTTACAGGGGGCCACCGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGATATTCCCAAGACGGCCTTTCGTTCGAGGTACGGACACTACGAATTCATAGTGATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGATCTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGAAGGTGACATTTTTAGGGCACGTGGTTTCCAATGAGGAGTCTGGACCCAGCCTAAGGTCGGACGGGACCAACCTGCCTCGACCGTCTACATCGATGAGATTCAGCTCTGGTCCCAGATACTACAGAGGTTTGTAG

Coding sequence (CDS)

ATGCCAAAGAAGATCACATGGGAGCAATTCAGGGAGAGCTTTTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGCTGTCCCGCTTTGCTCCCGATATGGGGCACACCGCTGATGCGTGTCCTCAAACCCTTAGAGACGACGCCACGCCCCTTCCGCTCCCAGGAGGGAGAGTCCCCACGACCCGGGAGGCCGAGCGAGCTAGTACGGTGGTGACAGGTACGCTCCCAATCTTGGGGCATTATGCTTTGGTACTATTTGACTCGGGGTCATCGCATTCATTTATATCCTCTATTTTTGTCAAGCATGCGGGTTTAGAAGTAGAACCGTTGGGTAGTGCCTTGTCTGTCTCTACTCCTTCTGGAGAGGTCCTTTTGTCTAAGGAAAAAATAAGGGCATGTTGGGTAGAAATAGCAAACCATACCTTGAATGTAACTTTACTGGTGCTAGATATGCAAGATTTCGATGTAATTTTAGGCATGGATTGGTTGTCAACTAACCATGCAACCATAGACTGTTTTAATAAGGAAGTAGTCTTTAACCCTCCTTCCGGGGATAAGTTTAAGTTTAGAGGAGCAGGCATGGTAGGTATTCCCAAGGTCATCTCAGCAATGAAGGCGAGTAAGCTACTTAGCCAGGGTACTTGGGGTATCTTGGCGAACGTAGTAGATATGGCAGAACCAGAAGTTTCCCTATCTTCCGAACCAGTAGTAAGGGAGTACCCTGACGTTTTCCCCGACGAACTCCCAGGACTTCCGCCTCCCAGGGAGGTAGACTTCGCCATTGAGTTAGAGCCCGGCACCGCCCCTATCTCTAGAGCTCCCTACAGAATGGCCCCAGCCGAGTTAAAGGAGTTGAAAGTCCAGTTACAGGAGCTGTTGGACAAGGGCTTTATCCGGCCCAGTGTATCACCTTGGGGAGCCCCAGTGTTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGCATTGACTACCGAGAATTGAACAAGGTGACAGTTAAGAACCGCTACCCCTTACCCAGAATCGAGGACCTGTTCGACCAGTTACAGGGGGCCACCGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGGATTAGGGACGGTGATATTCCCAAGACGGCCTTTCGTTCGAGGTACGGACACTACGAATTCATAGTGATGTCCTTTGGTTTAACTAATGCCCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGACTTTCTAGACCAATTCGTCATAGTCTTCATTGACGATATCTTGATCTATTCCAAGACTGAGGCCGAACACGAAGAGCACTTGCACCAAGTCTTGGAGACCCTTCGAGCTCATAAGCTATACGCCAAGTTCTCCAAGTGTGAGTTCTGGTTAAAGAAGGTGACATTTTTAGGGCACGTGGTTTCCAATGAGGAGTCTGGACCCAGCCTAAGGTCGGACGGGACCAACCTGCCTCGACCGTCTACATCGATGAGATTCAGCTCTGGTCCCAGATACTACAGAGGTTTGTAG

Protein sequence

MPKKITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMGHTADACPQTLRDDATPLPLPGGRVPTTREAERASTVVTGTLPILGHYALVLFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSNEESGPSLRSDGTNLPRPSTSMRFSSGPRYYRGL

Homology

[Close]

BLAST of MELO.jh101018.1 vs. NCBI nr
Match: KAA0025917.1 (pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo var. makuwa] >KAA0048622.1 pol protein [Cucumis melo var. makuwa] >KAA0056306.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 893 bits (2308), Expect = 5.75e-310
Identity = 486/657 (73.97%), Postives = 495/657 (75.34%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQG ++VEQYDAEFD+LSRFAPD+     
Sbjct: 187 KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGKLSVEQYDAEFDLLSRFAPDVVRDEA 246

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 247 ARTERFVNGLRLDLQGFVRALRPTTHADALRIALDLSLHERAGQSKVVGTGSASGQKRKA 306

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 307 EAQPDVIPQRTPRSGGVFQRHRRELAAAGRTLRELPTCTTCGKVHGGQCLAGSGVCFRCR 366

Query: 184 --GHTADACPQ-----TLRDDATPLPLPGGRVPTT--REAERASTVVTGTLPILGHYALV 243
             GHTADACP+     T R  + P     GRV  T  +EAERASTVVTGTLPILGHYALV
Sbjct: 367 QPGHTADACPRKPLETTPRQPSAPQQ---GRVFATNRQEAERASTVVTGTLPILGHYALV 426

Query: 244 LFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNV 303
           LFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNV
Sbjct: 427 LFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNV 486

Query: 304 TLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAM 363
           TLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAM
Sbjct: 487 TLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAM 546

Query: 364 KASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELE 423
           KASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELE
Sbjct: 547 KASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELE 606

Query: 424 PGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID 483
           PGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID
Sbjct: 607 PGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID 666

Query: 484 YRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 524
           YRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG
Sbjct: 667 YRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 726

[Close]

BLAST of MELO.jh101018.1 vs. NCBI nr
Match: KAA0046571.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 847 bits (2187), Expect = 1.07e-299
Identity = 461/654 (70.49%), Postives = 478/654 (73.09%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM     
Sbjct: 170 KITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEA 229

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 230 ARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERVDSSKAAGRGSALGQKRKV 289

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 290 ETQPDVAPQRTLRSGGVFQRHRRELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCR 349

Query: 184 --GHTADACPQTLRDDATPLPLPG--GRVPTT--REAERASTVVTGTLPILGHYALVLFD 243
             GHTAD CP+   +   P P     GRV TT  +EAERA TVVTGTLPILGHYA VLFD
Sbjct: 350 QPGHTADVCPRKPFETTPPQPSAAQQGRVFTTTQQEAERAGTVVTGTLPILGHYAFVLFD 409

Query: 244 SGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLL 303
           SGSSHSFISS+FV+H GLEVEPLGS LSVSTPSGEVLLSKE+I+AC VEIAN  L+VTLL
Sbjct: 410 SGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLL 469

Query: 304 VLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKAS 363
           VLDMQDFDVILGMDWLS NHA IDCF KEVVFNPPS   FKFRGAGMV IPKVISAMKAS
Sbjct: 470 VLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKAS 529

Query: 364 KLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 423
           KLLSQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT
Sbjct: 530 KLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 589

Query: 424 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 483
           APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE
Sbjct: 590 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 649

Query: 484 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 524
           LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE
Sbjct: 650 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 709

[Close]

BLAST of MELO.jh101018.1 vs. NCBI nr
Match: KAA0053272.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 840 bits (2171), Expect = 3.78e-299
Identity = 457/651 (70.20%), Postives = 474/651 (72.81%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM     
Sbjct: 170 KITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEA 229

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 230 ARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGSALGQKRKV 289

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 290 ETQPDVAPQRTLRSGGVFQRHRQELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCR 349

Query: 184 --GHTADACPQTLRDDATPLPLPG--GRV--PTTREAERASTVVTGTLPILGHYALVLFD 243
             GHTAD CP+   +   P P     GRV   T +EAERA TVVTGTLPILGHYA VLFD
Sbjct: 350 QPGHTADVCPRKPFETTPPQPSAAQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFD 409

Query: 244 SGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLL 303
           SGSSHSFISS+FV+H GLEVEPLGS LSVSTPSGEVLLSKE+I+AC VEIAN  L+VTLL
Sbjct: 410 SGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLL 469

Query: 304 VLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKAS 363
           VLDMQDFDVILGMDWLS NHA IDCF KEVVFNPPS   FKFR AGMV IPKVISAMKAS
Sbjct: 470 VLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRWAGMVCIPKVISAMKAS 529

Query: 364 KLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 423
           KLLSQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT
Sbjct: 530 KLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 589

Query: 424 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 483
           APISRAPYRMAPAELKE KVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE
Sbjct: 590 APISRAPYRMAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 649

Query: 484 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 521
           LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE
Sbjct: 650 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 709

[Close]

BLAST of MELO.jh101018.1 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 857 bits (2214), Expect = 3.40e-297
Identity = 461/634 (72.71%), Postives = 478/634 (75.39%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPD+     
Sbjct: 150 KITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDVVRDEA 209

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 210 VRTEKFVRGLRQDLQGIVRALQPATHADALRIALDLSLHERVDSSKAASRGTTLGQKRKR 269

Query: 124 ------------------------------------------GHTADACPQTLRDDATPL 183
                                                     GHTAD CP+   +   P 
Sbjct: 270 HRRELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQ 329

Query: 184 PLPG--GRV--PTTREAERASTVVTGTLPILGHYALVLFDSGSSHSFISSIFVKHAGLEV 243
           P     GRV   T +EAERA TVVTGTLPILGHYA VLFDSGSSHSFISS+FV+H GLEV
Sbjct: 330 PSASQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEV 389

Query: 244 EPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLLVLDMQDFDVILGMDWLSTNH 303
           EPLGS LSVSTPSGEVLLSKE+I+AC VEIANH LNVTLLVLDMQDFDVILGMDWLS NH
Sbjct: 390 EPLGSVLSVSTPSGEVLLSKEQIKACRVEIANHMLNVTLLVLDMQDFDVILGMDWLSANH 449

Query: 304 ATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLLSQGTWGILANVVDMAEP 363
           A IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLLSQGTWGILA+VVD+ EP
Sbjct: 450 ANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREP 509

Query: 364 EVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKV 423
           EVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKV
Sbjct: 510 EVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKV 569

Query: 424 QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFD 483
           QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFD
Sbjct: 570 QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFD 629

Query: 484 QLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN 524
           QLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEFIVMSFGLTNAPAVFMDLMN
Sbjct: 630 QLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMN 689

[Close]

BLAST of MELO.jh101018.1 vs. NCBI nr
Match: KAA0059723.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 852 bits (2201), Expect = 1.67e-295
Identity = 459/654 (70.18%), Postives = 478/654 (73.09%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLN EQGDMTVEQYDAEFDMLSRFAPD+     
Sbjct: 144 KITWEQFKENFYAKFFSANVKHAKLQEFLNFEQGDMTVEQYDAEFDMLSRFAPDVVRDEA 203

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 204 ARMEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKATGRGSDLGQKRKV 263

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 264 ETQPDVVPQRTLRSGGVFQRHRRELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCR 323

Query: 184 --GHTADACPQTLRDDATPLPLPG--GRV--PTTREAERASTVVTGTLPILGHYALVLFD 243
             GHTAD CP+   +   P P     GRV   T +EAERA TVVTGTLPILGHYA VLFD
Sbjct: 324 LPGHTADVCPRKPFETTPPQPSASQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFD 383

Query: 244 SGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLL 303
           SGSSHSFISS+FV+H GLEVEPLGS LSVSTPSGEVLLSKE+I+ACWVEIANH L+VTLL
Sbjct: 384 SGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACWVEIANHMLDVTLL 443

Query: 304 VLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKAS 363
           VLDMQDFDVILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKAS
Sbjct: 444 VLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKAS 503

Query: 364 KLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 423
           KLLSQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT
Sbjct: 504 KLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 563

Query: 424 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 483
           APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE
Sbjct: 564 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 623

Query: 484 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 524
           LNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR RYGHYE
Sbjct: 624 LNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRLRYGHYE 683

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 193.0 bits (489), Expect = 8.8e-48
Identity = 115/320 (35.94%), Postives = 175/320 (54.69%), Query Frame = 0


Query: 230 KASKLLSQGTWGILANVVDMAEPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 289
           +AS L   G +  + + +   EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 520 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 579

Query: 290 EVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 349
           +++       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 580 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 639

Query: 350 FVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIR 409
            V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+ +DL SGYHQ+ + 
Sbjct: 640 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPME 699

Query: 410 DGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSK 469
             D  KTAF +  G YE+ VM FGL NAP+ F   M   F+D   +FV V++DDILI+S+
Sbjct: 700 PKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSE 759

Query: 470 TEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSNEESGPSLRSDGT--NL 529
           +  EH +HL  VLE L+   L  K  KC+F  ++  FLG+ +  ++  P         + 
Sbjct: 760 SPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDF 819

Query: 530 PRPST---SMRFSSGPRYYR 531
           P P T   + RF     YYR
Sbjct: 820 PTPKTVKQAQRFLGMINYYR 835

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 8.8e-48
Identity = 115/320 (35.94%), Postives = 175/320 (54.69%), Query Frame = 0


Query: 230 KASKLLSQGTWGILANVVDMAEPEVSLSSEP---------VVREYPDVFPDELPGLPPPR 289
           +AS L   G +  + + +   EP  +  S           + ++Y ++  ++LP  P P 
Sbjct: 546 EASILEEDGKYSNVVSTIQSVEPNATDHSNKDTFCTLPVWLQQKYREIIRNDLP--PRPA 605

Query: 290 EVD-----FAIELEPGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVL 349
           +++       IE++PG       PY +     +E+   +Q+LLD  FI PS SP  +PV+
Sbjct: 606 DINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVV 665

Query: 350 FVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIR 409
            V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+ +DL SGYHQ+ + 
Sbjct: 666 LVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPME 725

Query: 410 DGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSK 469
             D  KTAF +  G YE+ VM FGL NAP+ F   M   F+D   +FV V++DDILI+S+
Sbjct: 726 PKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSE 785

Query: 470 TEAEHEEHLHQVLETLRAHKLYAKFSKCEFWLKKVTFLGHVVSNEESGPSLRSDGT--NL 529
           +  EH +HL  VLE L+   L  K  KC+F  ++  FLG+ +  ++  P         + 
Sbjct: 786 SPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDF 845

Query: 530 PRPST---SMRFSSGPRYYR 531
           P P T   + RF     YYR
Sbjct: 846 PTPKTVKQAQRFLGMINYYR 861

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.0e-43
Identity = 94/264 (35.61%), Postives = 159/264 (60.23%), Query Frame = 0


Query: 243 LANVVDMAEPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPY 302
           ++N+V   EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y
Sbjct: 365 VSNIV--KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNY 424

Query: 303 RMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 362
            + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N
Sbjct: 425 PLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPN 484

Query: 363 RYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGL 422
            YPLP IE L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G+
Sbjct: 485 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 544

Query: 423 TNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKF 482
           + APA F   +N +  +  +  V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    
Sbjct: 545 STAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQ 604

Query: 483 SKCEFWLKKVTFLGHVVSNEESGP 505
           +KCEF   +V F+G+ +S +   P
Sbjct: 605 AKCEFHQSQVKFIGYHISEKGFTP 622

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.0e-43
Identity = 94/264 (35.61%), Postives = 159/264 (60.23%), Query Frame = 0


Query: 243 LANVVDMAEPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPY 302
           ++N+V   EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y
Sbjct: 365 VSNIV--KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNY 424

Query: 303 RMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 362
            + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N
Sbjct: 425 PLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPN 484

Query: 363 RYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGL 422
            YPLP IE L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G+
Sbjct: 485 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 544

Query: 423 TNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKF 482
           + APA F   +N +  +  +  V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    
Sbjct: 545 STAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQ 604

Query: 483 SKCEFWLKKVTFLGHVVSNEESGP 505
           +KCEF   +V F+G+ +S +   P
Sbjct: 605 AKCEFHQSQVKFIGYHISEKGFTP 622

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 5.0e-43
Identity = 94/264 (35.61%), Postives = 159/264 (60.23%), Query Frame = 0


Query: 243 LANVVDMAEPEVSLSSEPVVREYPDVFPD-ELPGLPPP-REVDFAIELEPGTAPISRAPY 302
           ++N+V   EPE+      + +E+ D+  +     LP P + ++F +EL      +    Y
Sbjct: 365 VSNIV--KEPEL----PDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNY 424

Query: 303 RMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 362
            + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N
Sbjct: 425 PLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPN 484

Query: 363 RYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGL 422
            YPLP IE L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G+
Sbjct: 485 IYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGI 544

Query: 423 TNAPAVFMDLMNRVFKDFLDQFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAHKLYAKF 482
           + APA F   +N +  +  +  V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    
Sbjct: 545 STAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQ 604

Query: 483 SKCEFWLKKVTFLGHVVSNEESGP 505
           +KCEF   +V F+G+ +S +   P
Sbjct: 605 AKCEFHQSQVKFIGYHISEKGFTP 622

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL
Match: A0A5A7TP01 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00070 PE=4 SV=1)

HSP 1 Score: 893 bits (2308), Expect = 2.78e-310
Identity = 486/657 (73.97%), Postives = 495/657 (75.34%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQG ++VEQYDAEFD+LSRFAPD+     
Sbjct: 187 KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGKLSVEQYDAEFDLLSRFAPDVVRDEA 246

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 247 ARTERFVNGLRLDLQGFVRALRPTTHADALRIALDLSLHERAGQSKVVGTGSASGQKRKA 306

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 307 EAQPDVIPQRTPRSGGVFQRHRRELAAAGRTLRELPTCTTCGKVHGGQCLAGSGVCFRCR 366

Query: 184 --GHTADACPQ-----TLRDDATPLPLPGGRVPTT--REAERASTVVTGTLPILGHYALV 243
             GHTADACP+     T R  + P     GRV  T  +EAERASTVVTGTLPILGHYALV
Sbjct: 367 QPGHTADACPRKPLETTPRQPSAPQQ---GRVFATNRQEAERASTVVTGTLPILGHYALV 426

Query: 244 LFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNV 303
           LFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNV
Sbjct: 427 LFDSGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNV 486

Query: 304 TLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAM 363
           TLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAM
Sbjct: 487 TLLVLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAM 546

Query: 364 KASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELE 423
           KASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELE
Sbjct: 547 KASKLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELE 606

Query: 424 PGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID 483
           PGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID
Sbjct: 607 PGTAPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCID 666

Query: 484 YRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 524
           YRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG
Sbjct: 667 YRELNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYG 726

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ22 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00990 PE=4 SV=1)

HSP 1 Score: 847 bits (2187), Expect = 5.16e-300
Identity = 461/654 (70.49%), Postives = 478/654 (73.09%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM     
Sbjct: 170 KITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEA 229

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 230 ARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERVDSSKAAGRGSALGQKRKV 289

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 290 ETQPDVAPQRTLRSGGVFQRHRRELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCR 349

Query: 184 --GHTADACPQTLRDDATPLPLPG--GRVPTT--REAERASTVVTGTLPILGHYALVLFD 243
             GHTAD CP+   +   P P     GRV TT  +EAERA TVVTGTLPILGHYA VLFD
Sbjct: 350 QPGHTADVCPRKPFETTPPQPSAAQQGRVFTTTQQEAERAGTVVTGTLPILGHYAFVLFD 409

Query: 244 SGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLL 303
           SGSSHSFISS+FV+H GLEVEPLGS LSVSTPSGEVLLSKE+I+AC VEIAN  L+VTLL
Sbjct: 410 SGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLL 469

Query: 304 VLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKAS 363
           VLDMQDFDVILGMDWLS NHA IDCF KEVVFNPPS   FKFRGAGMV IPKVISAMKAS
Sbjct: 470 VLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKAS 529

Query: 364 KLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 423
           KLLSQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT
Sbjct: 530 KLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 589

Query: 424 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 483
           APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE
Sbjct: 590 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 649

Query: 484 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 524
           LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE
Sbjct: 650 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 709

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL
Match: A0A5A7UC03 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00700 PE=4 SV=1)

HSP 1 Score: 840 bits (2171), Expect = 1.83e-299
Identity = 457/651 (70.20%), Postives = 474/651 (72.81%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM     
Sbjct: 170 KITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEA 229

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 230 ARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKAAGRGSALGQKRKV 289

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 290 ETQPDVAPQRTLRSGGVFQRHRQELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCR 349

Query: 184 --GHTADACPQTLRDDATPLPLPG--GRV--PTTREAERASTVVTGTLPILGHYALVLFD 243
             GHTAD CP+   +   P P     GRV   T +EAERA TVVTGTLPILGHYA VLFD
Sbjct: 350 QPGHTADVCPRKPFETTPPQPSAAQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFD 409

Query: 244 SGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLL 303
           SGSSHSFISS+FV+H GLEVEPLGS LSVSTPSGEVLLSKE+I+AC VEIAN  L+VTLL
Sbjct: 410 SGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLL 469

Query: 304 VLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKAS 363
           VLDMQDFDVILGMDWLS NHA IDCF KEVVFNPPS   FKFR AGMV IPKVISAMKAS
Sbjct: 470 VLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSEASFKFRWAGMVCIPKVISAMKAS 529

Query: 364 KLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 423
           KLLSQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT
Sbjct: 530 KLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 589

Query: 424 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 483
           APISRAPYRMAPAELKE KVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE
Sbjct: 590 APISRAPYRMAPAELKEFKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 649

Query: 484 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 521
           LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE
Sbjct: 650 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 709

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 857 bits (2214), Expect = 1.65e-297
Identity = 461/634 (72.71%), Postives = 478/634 (75.39%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPD+     
Sbjct: 150 KITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDVVRDEA 209

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 210 VRTEKFVRGLRQDLQGIVRALQPATHADALRIALDLSLHERVDSSKAASRGTTLGQKRKR 269

Query: 124 ------------------------------------------GHTADACPQTLRDDATPL 183
                                                     GHTAD CP+   +   P 
Sbjct: 270 HRRELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQ 329

Query: 184 PLPG--GRV--PTTREAERASTVVTGTLPILGHYALVLFDSGSSHSFISSIFVKHAGLEV 243
           P     GRV   T +EAERA TVVTGTLPILGHYA VLFDSGSSHSFISS+FV+H GLEV
Sbjct: 330 PSASQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEV 389

Query: 244 EPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLLVLDMQDFDVILGMDWLSTNH 303
           EPLGS LSVSTPSGEVLLSKE+I+AC VEIANH LNVTLLVLDMQDFDVILGMDWLS NH
Sbjct: 390 EPLGSVLSVSTPSGEVLLSKEQIKACRVEIANHMLNVTLLVLDMQDFDVILGMDWLSANH 449

Query: 304 ATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKASKLLSQGTWGILANVVDMAEP 363
           A IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKASKLLSQGTWGILA+VVD+ EP
Sbjct: 450 ANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREP 509

Query: 364 EVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKV 423
           EVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKV
Sbjct: 510 EVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGTAPISRAPYRMAPAELKELKV 569

Query: 424 QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIEDLFD 483
           QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRI+DLFD
Sbjct: 570 QLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFD 629

Query: 484 QLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMN 524
           QLQGATVFSKIDLRSGYHQLRIRD DIPKTAFR RYGHYEFIVMSFGLTNAPAVFMDLMN
Sbjct: 630 QLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRLRYGHYEFIVMSFGLTNAPAVFMDLMN 689

[Close]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL
Match: A0A5A7UUX8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1395G00080 PE=4 SV=1)

HSP 1 Score: 852 bits (2201), Expect = 8.06e-296
Identity = 459/654 (70.18%), Postives = 478/654 (73.09%), Query Frame = 0


Query: 4   KITWEQFRESFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDM----- 63
           KITWEQF+E+FYAKFFSANVKHAKLQEFLN EQGDMTVEQYDAEFDMLSRFAPD+     
Sbjct: 144 KITWEQFKENFYAKFFSANVKHAKLQEFLNFEQGDMTVEQYDAEFDMLSRFAPDVVRDEA 203

Query: 64  ------------------------------------------------------------ 123
                                                                       
Sbjct: 204 ARMEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADSSKATGRGSDLGQKRKV 263

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 264 ETQPDVVPQRTLRSGGVFQRHRRELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCR 323

Query: 184 --GHTADACPQTLRDDATPLPLPG--GRV--PTTREAERASTVVTGTLPILGHYALVLFD 243
             GHTAD CP+   +   P P     GRV   T +EAERA TVVTGTLPILGHYA VLFD
Sbjct: 324 LPGHTADVCPRKPFETTPPQPSASQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFD 383

Query: 244 SGSSHSFISSIFVKHAGLEVEPLGSALSVSTPSGEVLLSKEKIRACWVEIANHTLNVTLL 303
           SGSSHSFISS+FV+H GLEVEPLGS LSVSTPSGEVLLSKE+I+ACWVEIANH L+VTLL
Sbjct: 384 SGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPSGEVLLSKEQIKACWVEIANHMLDVTLL 443

Query: 304 VLDMQDFDVILGMDWLSTNHATIDCFNKEVVFNPPSGDKFKFRGAGMVGIPKVISAMKAS 363
           VLDMQDFDVILGMDWLS NHA IDCF KEVVFNPPSG  FKFRGAGMV IPKVISAMKAS
Sbjct: 444 VLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPPSGASFKFRGAGMVCIPKVISAMKAS 503

Query: 364 KLLSQGTWGILANVVDMAEPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 423
           KLLSQGTWGILA+VVD+ EPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT
Sbjct: 504 KLLSQGTWGILASVVDIREPEVSLSSEPVVREYPDVFPDELPGLPPPREVDFAIELEPGT 563

Query: 424 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 483
           APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE
Sbjct: 564 APISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRE 623

Query: 484 LNKVTVKNRYPLPRIEDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYE 524
           LNKVTVKNRYPLPRI+DLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFR RYGHYE
Sbjct: 624 LNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRLRYGHYE 683

The following BLAST results are available for this feature:

BLAST of MELO.jh101018.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025917.1	5.75e-310	73.97	pol protein [Cucumis melo var. makuwa] >KAA0042949.1 pol protein [Cucumis melo v...	[more]
KAA0046571.1	1.07e-299	70.49	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053272.1	3.78e-299	70.20	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK01306.1	3.40e-297	72.71	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059723.1	1.67e-295	70.18	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh101018.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	8.8e-48	35.94	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.8e-48	35.94	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	5.0e-43	35.61	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.0e-43	35.61	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	5.0e-43	35.61	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TP01	2.78e-310	73.97	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold14...	[more]
A0A5A7TZ22	5.16e-300	70.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7UC03	1.83e-299	70.20	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BSV9	1.65e-297	72.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5A7UUX8	8.06e-296	70.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of MELO.jh101018.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 5..59 e-value: 4.8E-9 score: 36.4
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 337..496 e-value: 4.2E-28 score: 98.4
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 318..497 score: 10.884519
None	No IPR available	PFAM	PF08284	RVP_2	coord: 85..207 e-value: 2.3E-38 score: 131.1
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 283..422 e-value: 4.4E-95 score: 319.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 500..532
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 501..524
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 23..382
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 23..382
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 125..188 e-value: 2.60973E-11 score: 58.1168
None	No IPR available	CDD	cd01647	RT_LTR	coord: 321..497 e-value: 7.1848E-100 score: 297.199
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 362..497 e-value: 4.4E-95 score: 319.0
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 83..214 e-value: 4.0E-23 score: 83.6
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 99..197
IPR001969	Aspartic peptidase, active site	PROSITE	PS00141	ASP_PROTEASE	coord: 109..120
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 261..503

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101018.1.t1	MELO.jh101018.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity