MELO.jh100777.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh100777.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPentatricopeptide repeat-containing protein
Locationchr02: 9261858 .. 9262497 (+)
RNA-Seq ExpressionMELO.jh100777.1
SyntenyMELO.jh100777.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGATTAATCCATGAGTCAATAGCCCATGGCAGCACCAAATCATTTAACTCTCTCGTAAGTCGTCTTTCTTCTCAAGGTGCTCACCATCAAGTTCTGCAAACCTATATTTCTATGCAAAAAACCCACACCCCATCAGATGCTTACACTTTTCCCAGCCTCTTCAAAGCTTGTACCAATTTGAACTTATTTTCACATGGCCTCTCACTTCATCAATCTGTCGTCGTTAATGGGCTCTCTCATGATTCCTATATTGGGTCTTCGCTCATCAGTTTTTATGCCAAATTCGGGTGCATTCATCTTGGTCGCAAGGTGTTTGATACAATGCTCAAAAGAAATGTTGTTCCTTGGACCACCATAATTGGGTCTTATTCACGGGAAGGGGACATTGATATTGCTTTCTCGATGTTCAAACAAATGCGGGAGAGTGGTATTCAGCCCACTTCTGTCACCTTGTTGAGTCTGCTTCCTGGTATTTCAAAGCTTCCCCTTCTTCTTTGTTTGCATTGTTTGATTTTTTTATATGGTTTTGAGTCAGACTTAGCTTTATCGAACTCCATGGTGAATATGTATGGTAAATGTGGCAGAATTGCTGATGCAAGAAGTTTGTTTGAGTCAATTGATTACAGAGACATAG

mRNA sequence

ATGAGTAGATTAATCCATGAGTCAATAGCCCATGGCAGCACCAAATCATTTAACTCTCTCGTAAGTCGTCTTTCTTCTCAAGGTGCTCACCATCAAGTTCTGCAAACCTATATTTCTATGCAAAAAACCCACACCCCATCAGATGCTTACACTTTTCCCAGCCTCTTCAAAGCTTGTACCAATTTGAACTTATTTTCACATGGCCTCTCACTTCATCAATCTGTCGTCGTTAATGGGCTCTCTCATGATTCCTATATTGGGTCTTCGCTCATCAGTTTTTATGCCAAATTCGGGTGCATTCATCTTGGTCGCAAGGTGTTTGATACAATGCTCAAAAGAAATGTTGTTCCTTGGACCACCATAATTGGGTCTTATTCACGGGAAGGGGACATTGATATTGCTTTCTCGATGTTCAAACAAATGCGGGAGAGTGGTATTCAGCCCACTTCTGTCACCTTGTTGAGTCTGCTTCCTGAATTGCTGATGCAAGAAGTTTGTTTGAGTCAATTGATTACAGAGACATAG

Coding sequence (CDS)

ATGAGTAGATTAATCCATGAGTCAATAGCCCATGGCAGCACCAAATCATTTAACTCTCTCGTAAGTCGTCTTTCTTCTCAAGGTGCTCACCATCAAGTTCTGCAAACCTATATTTCTATGCAAAAAACCCACACCCCATCAGATGCTTACACTTTTCCCAGCCTCTTCAAAGCTTGTACCAATTTGAACTTATTTTCACATGGCCTCTCACTTCATCAATCTGTCGTCGTTAATGGGCTCTCTCATGATTCCTATATTGGGTCTTCGCTCATCAGTTTTTATGCCAAATTCGGGTGCATTCATCTTGGTCGCAAGGTGTTTGATACAATGCTCAAAAGAAATGTTGTTCCTTGGACCACCATAATTGGGTCTTATTCACGGGAAGGGGACATTGATATTGCTTTCTCGATGTTCAAACAAATGCGGGAGAGTGGTATTCAGCCCACTTCTGTCACCTTGTTGAGTCTGCTTCCTGAATTGCTGATGCAAGAAGTTTGTTTGAGTCAATTGATTACAGAGACATAG

Protein sequence

MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPELLMQEVCLSQLITET
Homology
BLAST of MELO.jh100777.1 vs. NCBI nr
Match: XP_016899786.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g04370 [Cucumis melo])

HSP 1 Score: 315 bits (806), Expect = 2.74e-100
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT
Sbjct: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
           NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT
Sbjct: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP
Sbjct: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158

BLAST of MELO.jh100777.1 vs. NCBI nr
Match: XP_004139152.1 (pentatricopeptide repeat-containing protein At4g04370 [Cucumis sativus])

HSP 1 Score: 301 bits (770), Expect = 6.07e-95
Identity = 152/158 (96.20%), Postives = 152/158 (96.20%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           MS  IHESIAHG TKSFNSLVSRLS QGAHHQVLQTYISMQKTHT  DAYTFPSLFKACT
Sbjct: 1   MSGFIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
           NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT
Sbjct: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP
Sbjct: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158

BLAST of MELO.jh100777.1 vs. NCBI nr
Match: XP_038878475.1 (pentatricopeptide repeat-containing protein At4g04370 [Benincasa hispida] >XP_038878476.1 pentatricopeptide repeat-containing protein At4g04370 [Benincasa hispida])

HSP 1 Score: 280 bits (715), Expect = 1.02e-86
Identity = 136/156 (87.18%), Postives = 147/156 (94.23%), Query Frame = 0

Query: 3   RLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNL 62
           +LIHE IAHGSTKSFNSL++RLSSQGAHHQVLQTYIS Q T+TP DAYTFPSL KACTNL
Sbjct: 13  KLIHEPIAHGSTKSFNSLLNRLSSQGAHHQVLQTYISFQNTNTPPDAYTFPSLLKACTNL 72

Query: 63  NLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTII 122
           N+FS+GLS+HQSV+VNGLSHDSYIGSSLISFYAKFGCIH GRKVFDTM +RNVVPWTT+I
Sbjct: 73  NMFSNGLSIHQSVIVNGLSHDSYIGSSLISFYAKFGCIHFGRKVFDTMPERNVVPWTTLI 132

Query: 123 GSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           G YSR+GDIDIAFSMFKQMRESGIQPTSVT LSLLP
Sbjct: 133 GCYSRQGDIDIAFSMFKQMRESGIQPTSVTFLSLLP 168

BLAST of MELO.jh100777.1 vs. NCBI nr
Match: KAG6588593.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (676), Expect = 1.78e-81
Identity = 130/158 (82.28%), Postives = 143/158 (90.51%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           M+RLIHESI HGSTKSFN+L++RLSSQ AHHQVLQTYISM  T+TP DAYTFPSL KACT
Sbjct: 1   MNRLIHESITHGSTKSFNALINRLSSQAAHHQVLQTYISMLNTNTPPDAYTFPSLLKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
            LN FS+GLS+HQSV+VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM +RNVVPWT 
Sbjct: 61  LLNSFSNGLSIHQSVIVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMPERNVVPWTA 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIG YSR+GD+ IAF+MFKQMRE+ I PTSVT LSLLP
Sbjct: 121 IIGCYSRQGDVGIAFTMFKQMRENEIHPTSVTFLSLLP 158

BLAST of MELO.jh100777.1 vs. NCBI nr
Match: XP_022989321.1 (pentatricopeptide repeat-containing protein At4g04370 isoform X2 [Cucurbita maxima] >XP_022989322.1 pentatricopeptide repeat-containing protein At4g04370 isoform X2 [Cucurbita maxima])

HSP 1 Score: 265 bits (677), Expect = 3.37e-81
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           M+RLIHESI HGSTKSFN+L++RLSSQ AHHQVLQTYISM  T+TP DAYTFPSL KACT
Sbjct: 1   MNRLIHESITHGSTKSFNALINRLSSQAAHHQVLQTYISMLNTNTPPDAYTFPSLLKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
            LN FS GLS+HQSV+VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM +RNVVPWT 
Sbjct: 61  LLNSFSDGLSIHQSVIVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMPERNVVPWTA 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIG YSR+GD+ IAF+MFKQMRES I PTSVT LSLLP
Sbjct: 121 IIGCYSRQGDVGIAFTMFKQMRESEIHPTSVTFLSLLP 158

BLAST of MELO.jh100777.1 vs. ExPASy Swiss-Prot
Match: Q9XE98 (Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E99 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.1e-34
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 0

Query: 4   LIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLN 63
           +I  S    STK FNS ++ LSS G H QVL T+ SM       D +TFPSL KAC +L 
Sbjct: 1   MIRTSSVLNSTKYFNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQ 60

Query: 64  LFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIG 123
             S GLS+HQ V+VNG S D YI SSL++ YAKFG +   RKVF+ M +R+VV WT +IG
Sbjct: 61  RLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIG 120

Query: 124 SYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPELL 162
            YSR G +  A S+  +MR  GI+P  VTLL +L  +L
Sbjct: 121 CYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVL 158

BLAST of MELO.jh100777.1 vs. ExPASy Swiss-Prot
Match: O49287 (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E5 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 0

Query: 2   SRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTN 61
           ++ + E I + S  S+NS+ +  S  G   + L+ +  M K   P+D  +  S+  AC +
Sbjct: 403 AKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACAS 462

Query: 62  LNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTI 121
           ++    G  +     + GL  D  + SSLI  Y K G +  GR+VFDTM+K + VPW ++
Sbjct: 463 ISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSM 522

Query: 122 IGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLL 158
           I  Y+  G    A  +FK+M  +GI+PT +T + +L
Sbjct: 523 ISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVL 558

BLAST of MELO.jh100777.1 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.2e-19
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 0

Query: 17  FNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76
           FNS++   S        +  Y  M  ++     YTF S+ K+C +L+    G  +H   V
Sbjct: 75  FNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV 134

Query: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136
           V+G   D+Y+ ++L++FY+K G +   R+VFD M ++++V W +++  + + G  D A  
Sbjct: 135 VSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQ 194

Query: 137 MFKQMRESGIQPTSVTLLSLL 158
           +F QMRESG +P S T +SLL
Sbjct: 195 VFYQMRESGFEPDSATFVSLL 215

BLAST of MELO.jh100777.1 vs. ExPASy Swiss-Prot
Match: Q9LSL8 (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 0

Query: 5   IHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNL 64
           + + I + +  S+ SL+S L   G     L  +  M +     +++T  S  + C+NL +
Sbjct: 324 VFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAM 383

Query: 65  FSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGS 124
           F  G  +H  V   G   D Y GS LI  Y K GC  + R VFDT+ + +V+   T+I S
Sbjct: 384 FEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYS 443

Query: 125 YSREGDIDIAFSMFKQMRESGIQPTSVTLLSLL 158
           Y++ G    A  +F++M   G+QP  VT+LS+L
Sbjct: 444 YAQNGFGREALDLFERMINLGLQPNDVTVLSVL 476

BLAST of MELO.jh100777.1 vs. ExPASy Swiss-Prot
Match: Q9SS60 (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 44/142 (30.99%), Postives = 80/142 (56.34%), Query Frame = 0

Query: 17  FNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76
           +NS++   S  G   + L+ Y  ++++    D YTFPS+ KAC  L     G  +++ ++
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136
             G   D ++G++L+  Y++ G +   R+VFD M  R++V W ++I  YS  G  + A  
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 137 MFKQMRESGIQPTSVTLLSLLP 159
           ++ +++ S I P S T+ S+LP
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLP 215

BLAST of MELO.jh100777.1 vs. ExPASy TrEMBL
Match: A0A1S4DUX5 (pentatricopeptide repeat-containing protein At4g04370 OS=Cucumis melo OX=3656 GN=LOC103487188 PE=4 SV=1)

HSP 1 Score: 315 bits (806), Expect = 1.33e-100
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT
Sbjct: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
           NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT
Sbjct: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP
Sbjct: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158

BLAST of MELO.jh100777.1 vs. ExPASy TrEMBL
Match: A0A0A0M0F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650050 PE=4 SV=1)

HSP 1 Score: 301 bits (770), Expect = 2.94e-95
Identity = 152/158 (96.20%), Postives = 152/158 (96.20%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           MS  IHESIAHG TKSFNSLVSRLS QGAHHQVLQTYISMQKTHT  DAYTFPSLFKACT
Sbjct: 1   MSGFIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
           NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT
Sbjct: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP
Sbjct: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158

BLAST of MELO.jh100777.1 vs. ExPASy TrEMBL
Match: A0A6J1JJR3 (pentatricopeptide repeat-containing protein At4g04370 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486420 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 1.63e-81
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           M+RLIHESI HGSTKSFN+L++RLSSQ AHHQVLQTYISM  T+TP DAYTFPSL KACT
Sbjct: 1   MNRLIHESITHGSTKSFNALINRLSSQAAHHQVLQTYISMLNTNTPPDAYTFPSLLKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
            LN FS GLS+HQSV+VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM +RNVVPWT 
Sbjct: 61  LLNSFSDGLSIHQSVIVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMPERNVVPWTA 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIG YSR+GD+ IAF+MFKQMRES I PTSVT LSLLP
Sbjct: 121 IIGCYSRQGDVGIAFTMFKQMRESEIHPTSVTFLSLLP 158

BLAST of MELO.jh100777.1 vs. ExPASy TrEMBL
Match: A0A6J1EZ22 (pentatricopeptide repeat-containing protein At4g04370 OS=Cucurbita moschata OX=3662 GN=LOC111437743 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 2.13e-81
Identity = 130/158 (82.28%), Postives = 143/158 (90.51%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           M+RLIHESI HGSTKSFN+L++RLSSQ AHHQVLQTYISM  T+TP DAYTFPSL KACT
Sbjct: 1   MNRLIHESITHGSTKSFNALINRLSSQAAHHQVLQTYISMLNTNTPPDAYTFPSLLKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
            LN FS+GLS+HQSV+VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM +RNVVPWT 
Sbjct: 61  LLNSFSNGLSIHQSVIVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMPERNVVPWTA 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIG YSR+GD+ IAF+MFKQMRE+ I PTSVT LSLLP
Sbjct: 121 IIGCYSRQGDVGIAFTMFKQMRENEIHPTSVTFLSLLP 158

BLAST of MELO.jh100777.1 vs. ExPASy TrEMBL
Match: A0A6J1JM14 (pentatricopeptide repeat-containing protein At4g04370 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486420 PE=4 SV=1)

HSP 1 Score: 265 bits (677), Expect = 5.47e-81
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 0

Query: 1   MSRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACT 60
           M+RLIHESI HGSTKSFN+L++RLSSQ AHHQVLQTYISM  T+TP DAYTFPSL KACT
Sbjct: 1   MNRLIHESITHGSTKSFNALINRLSSQAAHHQVLQTYISMLNTNTPPDAYTFPSLLKACT 60

Query: 61  NLNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTT 120
            LN FS GLS+HQSV+VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTM +RNVVPWT 
Sbjct: 61  LLNSFSDGLSIHQSVIVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMPERNVVPWTA 120

Query: 121 IIGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLP 158
           IIG YSR+GD+ IAF+MFKQMRES I PTSVT LSLLP
Sbjct: 121 IIGCYSRQGDVGIAFTMFKQMRESEIHPTSVTFLSLLP 158

BLAST of MELO.jh100777.1 vs. TAIR 10
Match: AT4G04370.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-35
Identity = 80/158 (50.63%), Postives = 101/158 (63.92%), Query Frame = 0

Query: 4   LIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLN 63
           +I  S    STK FNS ++ LSS G H QVL T+ SM       D +TFPSL KAC +L 
Sbjct: 1   MIRTSSVLNSTKYFNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQ 60

Query: 64  LFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIG 123
             S GLS+HQ V+VNG S D YI SSL++ YAKFG +   RKVF+ M +R+VV WT +IG
Sbjct: 61  RLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIG 120

Query: 124 SYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPELL 162
            YSR G +  A S+  +MR  GI+P  VTLL +L  +L
Sbjct: 121 CYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVL 158

BLAST of MELO.jh100777.1 vs. TAIR 10
Match: AT1G77010.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 9.0e-21
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 0

Query: 2   SRLIHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTN 61
           ++ + E I + S  S+NS+ +  S  G   + L+ +  M K   P+D  +  S+  AC +
Sbjct: 403 AKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACAS 462

Query: 62  LNLFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTI 121
           ++    G  +     + GL  D  + SSLI  Y K G +  GR+VFDTM+K + VPW ++
Sbjct: 463 ISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSM 522

Query: 122 IGSYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLL 158
           I  Y+  G    A  +FK+M  +GI+PT +T + +L
Sbjct: 523 ISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVL 558

BLAST of MELO.jh100777.1 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-20
Identity = 48/141 (34.04%), Postives = 80/141 (56.74%), Query Frame = 0

Query: 17  FNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76
           FNS++   S        +  Y  M  ++     YTF S+ K+C +L+    G  +H   V
Sbjct: 75  FNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV 134

Query: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136
           V+G   D+Y+ ++L++FY+K G +   R+VFD M ++++V W +++  + + G  D A  
Sbjct: 135 VSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQ 194

Query: 137 MFKQMRESGIQPTSVTLLSLL 158
           +F QMRESG +P S T +SLL
Sbjct: 195 VFYQMRESGFEPDSATFVSLL 215

BLAST of MELO.jh100777.1 vs. TAIR 10
Match: AT5G65570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-19
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 0

Query: 5   IHESIAHGSTKSFNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNL 64
           + + I + +  S+ SL+S L   G     L  +  M +     +++T  S  + C+NL +
Sbjct: 324 VFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAM 383

Query: 65  FSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGS 124
           F  G  +H  V   G   D Y GS LI  Y K GC  + R VFDT+ + +V+   T+I S
Sbjct: 384 FEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYS 443

Query: 125 YSREGDIDIAFSMFKQMRESGIQPTSVTLLSLL 158
           Y++ G    A  +F++M   G+QP  VT+LS+L
Sbjct: 444 YAQNGFGREALDLFERMINLGLQPNDVTVLSVL 476

BLAST of MELO.jh100777.1 vs. TAIR 10
Match: AT3G03580.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 44/142 (30.99%), Postives = 80/142 (56.34%), Query Frame = 0

Query: 17  FNSLVSRLSSQGAHHQVLQTYISMQKTHTPSDAYTFPSLFKACTNLNLFSHGLSLHQSVV 76
           +NS++   S  G   + L+ Y  ++++    D YTFPS+ KAC  L     G  +++ ++
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 77  VNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAFS 136
             G   D ++G++L+  Y++ G +   R+VFD M  R++V W ++I  YS  G  + A  
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 137 MFKQMRESGIQPTSVTLLSLLP 159
           ++ +++ S I P S T+ S+LP
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLP 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016899786.12.74e-100100.00PREDICTED: pentatricopeptide repeat-containing protein At4g04370 [Cucumis melo][more]
XP_004139152.16.07e-9596.20pentatricopeptide repeat-containing protein At4g04370 [Cucumis sativus][more]
XP_038878475.11.02e-8687.18pentatricopeptide repeat-containing protein At4g04370 [Benincasa hispida] >XP_03... [more]
KAG6588593.11.78e-8182.28Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022989321.13.37e-8182.91pentatricopeptide repeat-containing protein At4g04370 isoform X2 [Cucurbita maxi... [more]
Match NameE-valueIdentityDescription
Q9XE983.1e-3450.63Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana OX... [more]
O492871.3e-1932.69Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS... [more]
P930118.2e-1934.04Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
Q9LSL83.1e-1833.33Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana OX... [more]
Q9SS601.5e-1730.99Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A1S4DUX51.33e-100100.00pentatricopeptide repeat-containing protein At4g04370 OS=Cucumis melo OX=3656 GN... [more]
A0A0A0M0F82.94e-9596.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G650050 PE=4 SV=1[more]
A0A6J1JJR31.63e-8182.91pentatricopeptide repeat-containing protein At4g04370 isoform X2 OS=Cucurbita ma... [more]
A0A6J1EZ222.13e-8182.28pentatricopeptide repeat-containing protein At4g04370 OS=Cucurbita moschata OX=3... [more]
A0A6J1JM145.47e-8182.91pentatricopeptide repeat-containing protein At4g04370 isoform X1 OS=Cucurbita ma... [more]
Match NameE-valueIdentityDescription
AT4G04370.12.2e-3550.63Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G77010.19.0e-2132.69Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G33760.15.8e-2034.04Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G65570.12.2e-1933.33Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G03580.11.1e-1830.99Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 113..157
e-value: 2.5E-10
score: 40.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 118..149
e-value: 4.2E-9
score: 34.0
coord: 89..118
e-value: 2.9E-4
score: 18.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..148
score: 12.75901
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 13..169
e-value: 1.9E-28
score: 101.7
NoneNo IPR availablePANTHERPTHR47928:SF60PPR CONTAINING PLANT-LIKE PROTEINcoord: 9..116
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 9..116
coord: 115..157
NoneNo IPR availablePANTHERPTHR47928:SF60PPR CONTAINING PLANT-LIKE PROTEINcoord: 115..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh100777.1.t1MELO.jh100777.1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding