MELO.jh033999.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033999.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Locationchr11: 22265898 .. 22266246 (+)
RNA-Seq ExpressionMELO.jh033999.1
SyntenyMELO.jh033999.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGT

mRNA sequence

TTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGT

Coding sequence (CDS)

ATGCGGAGGTACCCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGA

Protein sequence

MRRYPSAASFLEGLWPLRPRKFEAITGL
Homology
BLAST of MELO.jh033999.1 vs. NCBI nr
Match: DAD49813.1 (TPA_asm: hypothetical protein HUJ06_031854 [Nelumbo nucifera])

HSP 1 Score: 57.8 bits (138), Expect = 3.29e-10
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  MRRYPSAASFLEGLWPLRPRKFEAITGL 28
          MRR PSAASFLEGLWP RPRKFEAITGL
Sbjct: 1  MRRAPSAASFLEGLWPFRPRKFEAITGL 28

BLAST of MELO.jh033999.1 vs. NCBI nr
Match: KAA0051481.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 6.79e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0

Query: 1    MRRYPSAASFLEGLWPLRPRKFEAITGL 28
            MRRYPSAASFLEGLWPLRPRKFEAITG+
Sbjct: 1477 MRRYPSAASFLEGLWPLRPRKFEAITGI 1504

BLAST of MELO.jh033999.1 vs. NCBI nr
Match: KAF7807874.1 (hypothetical protein G2W53_040035 [Senna tora])

HSP 1 Score: 57.8 bits (138), Expect = 2.42e-09
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 0

Query: 1  MRRYPSAASFLEGLWPLRPRKFEAITG 27
          MRR PSAASFLEGLWPLRPRKFEAITG
Sbjct: 1  MRRRPSAASFLEGLWPLRPRKFEAITG 27

BLAST of MELO.jh033999.1 vs. NCBI nr
Match: KAF7807853.1 (hypothetical protein G2W53_040014 [Senna tora])

HSP 1 Score: 58.5 bits (140), Expect = 1.12e-08
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  MRRYPSAASFLEGLWPLRPRKFEAITGL 28
          MRR PSAASFLEGLWPLRPRKFEAITG+
Sbjct: 1  MRRRPSAASFLEGLWPLRPRKFEAITGI 28

BLAST of MELO.jh033999.1 vs. NCBI nr
Match: KAF7800521.1 (atp synthase subunit beta [Senna tora] >KAF7801168.1 atp synthase subunit beta [Senna tora])

HSP 1 Score: 58.5 bits (140), Expect = 1.15e-08
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  MRRYPSAASFLEGLWPLRPRKFEAITGL 28
          MRR PSAASFLEGLWPLRPRKFEAITG+
Sbjct: 1  MRRRPSAASFLEGLWPLRPRKFEAITGI 28

BLAST of MELO.jh033999.1 vs. ExPASy TrEMBL
Match: A0A5A7UD54 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002510 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.29e-10
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0

Query: 1    MRRYPSAASFLEGLWPLRPRKFEAITGL 28
            MRRYPSAASFLEGLWPLRPRKFEAITG+
Sbjct: 1477 MRRYPSAASFLEGLWPLRPRKFEAITGI 1504

BLAST of MELO.jh033999.1 vs. ExPASy TrEMBL
Match: A0A6J5X5M8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS29906 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.66e-09
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 5  PSAASFLEGLWPLRPRKFEAITGL 28
          PSAASFLEGLWPLRPRKFEAITGL
Sbjct: 35 PSAASFLEGLWPLRPRKFEAITGL 58

BLAST of MELO.jh033999.1 vs. ExPASy TrEMBL
Match: A0A6J5UBA9 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS21292 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.66e-09
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 5  PSAASFLEGLWPLRPRKFEAITGL 28
          PSAASFLEGLWPLRPRKFEAITGL
Sbjct: 35 PSAASFLEGLWPLRPRKFEAITGL 58

BLAST of MELO.jh033999.1 vs. ExPASy TrEMBL
Match: A0A6J5XAB5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS27073 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.82e-09
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 5  PSAASFLEGLWPLRPRKFEAITGL 28
          PSAASFLEGLWPLRPRKFEAITGL
Sbjct: 36 PSAASFLEGLWPLRPRKFEAITGL 59

BLAST of MELO.jh033999.1 vs. ExPASy TrEMBL
Match: A0A0K9RLV6 (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_058030 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.72e-07
Identity = 22/25 (88.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 4  YPSAASFLEGLWPLRPRKFEAITGL 28
          Y  AASFLEGLWP RPRKFEAITGL
Sbjct: 41 YTFAASFLEGLWPFRPRKFEAITGL 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DAD49813.13.29e-1092.86TPA_asm: hypothetical protein HUJ06_031854 [Nelumbo nucifera][more]
KAA0051481.16.79e-1096.43reverse transcriptase [Cucumis melo var. makuwa][more]
KAF7807874.12.42e-0996.30hypothetical protein G2W53_040035 [Senna tora][more]
KAF7807853.11.12e-0892.86hypothetical protein G2W53_040014 [Senna tora][more]
KAF7800521.11.15e-0892.86atp synthase subunit beta [Senna tora] >KAF7801168.1 atp synthase subunit beta [... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UD543.29e-1096.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55... [more]
A0A6J5X5M86.66e-09100.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS29906 PE=... [more]
A0A6J5UBA96.66e-09100.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS21292 PE=4 S... [more]
A0A6J5XAB56.82e-09100.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS27073 PE=... [more]
A0A0K9RLV63.72e-0788.00Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_058030 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033999.1.t1MELO.jh033999.1.t1mRNA