MELO.jh033970.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033970.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr11: 6527020 .. 6527376 (-)
RNA-Seq ExpressionMELO.jh033970.1
SyntenyMELO.jh033970.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGATCGCCCCTGGAGAAGAGAAGCCTATTTTCCCACACGTCATTCGCTTCAGCCAGACGATAAGCGTGTGCCTGCGAAAGACATTTCCCTTCCGCTGTCTTAAGTGGGCAGACGTTGGGACAGAATACATTGAGGTCGTCAAGAGCCAATCAATGTGTTATGTTTGTAGTGTGTAGCAATTGTTTGTGCTTGATTTCAATGACCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACGATCTTTAAAGAGTTTCGGGCCGACTGTCACAGACATTTCAAAAAGTACAGTGACCCGGAGGAGACTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAAGATTGA

mRNA sequence

ATGACGATCGCCCCTGGAGAAGAGAAGCCTATTTTCCCACACGTCATTCGCTTCAGCCAGACGATAAGCGTGTGCCTGCGAAAGACATTTCCCTTCCGCTGTCTTAAGTGGGCAGACGTTGGGACAGAATACATTGAGGTCGTCAAGAGCCAATCAATGTGTTATGTTTGTAGTGTGTAGCAATTGTTTGTGCTTGATTTCAATGACCAAGCAATGAATAGGTTTGTTGAGCATCAGATGCTCACGATCTTTAAAGAGTTTCGGGCCGACTGTCACAGACATTTCAAAAAGTACAGTGACCCGGAGGAGACTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAAGATTGA

Coding sequence (CDS)

ATGACGATCGCCCCTGGAGAAGAGAAGCCTATTTTCCCACACGTCATTCGCTTCAGCCAGACGATAAGCGTGTGCCTGCGAAAGACATTTCCCTTCCGCTGTCTTAAGTGGGCAGACGTTGGGACAGAATACATTGAGGTCGTCAAGAGCCAATCAATGTGTTATGTTTGTAGTGTGTAG

Protein sequence

MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVKSQSMCYVCSV
Homology
BLAST of MELO.jh033970.1 vs. NCBI nr
Match: KAA0047934.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 2.47e-25
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVV 48
           MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIE++
Sbjct: 114 MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEML 161

BLAST of MELO.jh033970.1 vs. NCBI nr
Match: KAA0056316.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 1.82e-21
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVK 49
           MTIAPG EKPI PHV+RFSQ I VC+RKTFP RCLKW DVG EYIEVVK
Sbjct: 64  MTIAPGAEKPISPHVVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVK 112

BLAST of MELO.jh033970.1 vs. NCBI nr
Match: KAA0045294.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.93e-21
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVK 49
           MTIAPG EKPI PH +RFSQTI VC+RKTFP RCLKWADVG EYIEVVK
Sbjct: 63  MTIAPGAEKPISPHAVRFSQTIGVCVRKTFPVRCLKWADVGREYIEVVK 111

BLAST of MELO.jh033970.1 vs. NCBI nr
Match: KAA0062316.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.35e-21
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVKS 50
           MTIAPG EK I PHV+RFSQ I VC+RKTFP RCLKWADVG EYIEVVKS
Sbjct: 63  MTIAPGAEKSISPHVVRFSQAIDVCVRKTFPLRCLKWADVGREYIEVVKS 112

BLAST of MELO.jh033970.1 vs. NCBI nr
Match: TYK29915.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.04e-20
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVK 49
           MTIAPG EKPI  H +RFSQ I VC+RKTFP RCLKWADVG EYIEVVK
Sbjct: 62  MTIAPGAEKPISSHAVRFSQVIDVCMRKTFPVRCLKWADVGREYIEVVK 110

BLAST of MELO.jh033970.1 vs. ExPASy TrEMBL
Match: A0A5A7TY35 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold199G00100 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.19e-25
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVV 48
           MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIE++
Sbjct: 114 MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEML 161

BLAST of MELO.jh033970.1 vs. ExPASy TrEMBL
Match: A0A5A7UPS7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2300G00010 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.83e-22
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVK 49
           MTIAPG EKPI PHV+RFSQ I VC+RKTFP RCLKW DVG EYIEVVK
Sbjct: 64  MTIAPGAEKPISPHVVRFSQAIGVCVRKTFPVRCLKWTDVGREYIEVVK 112

BLAST of MELO.jh033970.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ98 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00520 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.42e-21
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVK 49
           MTIAPG EKPI PH +RFSQTI VC+RKTFP RCLKWADVG EYIEVVK
Sbjct: 63  MTIAPGAEKPISPHAVRFSQTIGVCVRKTFPVRCLKWADVGREYIEVVK 111

BLAST of MELO.jh033970.1 vs. ExPASy TrEMBL
Match: A0A5A7V7B7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00640 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.62e-21
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVKS 50
           MTIAPG EK I PHV+RFSQ I VC+RKTFP RCLKWADVG EYIEVVKS
Sbjct: 63  MTIAPGAEKSISPHVVRFSQAIDVCVRKTFPLRCLKWADVGREYIEVVKS 112

BLAST of MELO.jh033970.1 vs. ExPASy TrEMBL
Match: A0A5D3E3N2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34171G00010 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.01e-21
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 1   MTIAPGEEKPIFPHVIRFSQTISVCLRKTFPFRCLKWADVGTEYIEVVK 49
           MTIAPG EKPI  H +RFSQ I VC+RKTFP RCLKWADVG EYIEVVK
Sbjct: 62  MTIAPGAEKPISSHAVRFSQVIDVCMRKTFPVRCLKWADVGREYIEVVK 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047934.12.47e-2595.83CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0056316.11.82e-2181.63CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0045294.12.93e-2183.67CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0062316.13.35e-2182.00CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK29915.11.04e-2079.59CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TY351.19e-2595.83CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UPS78.83e-2281.63CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TQ981.42e-2183.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7V7B71.62e-2182.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3E3N25.01e-2179.59CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033970.1.t1MELO.jh033970.1.t1mRNA