MELO.jh033967.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033967.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 2979107 .. 2981126 (+)
RNA-Seq ExpressionMELO.jh033967.1
SyntenyMELO.jh033967.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGCAAATTTAAGAGCATTCTCGAAGGGGTCGGCGTCGGAGCGAAGCGAAAATGGGGCAGAGGTACAGGGTTTGAACAAAACGGATCTAAGGGTTGTCGGATTGGAACAAACCGGAACCAGAGCAAGTCGTCGGATTTGAAGAGCCTCATCGTCGTTGGAGCAGAACGAATCCAAACAACGAATCTCCATCGCCTTCTGCGTCAGGTACAGTGTACGGCATCTACGGATTTGAACAGAACGGATCAAATGGAGGGTCAGCAAATCTGTGAATCTGAAGGAGTCGGTTGGTACAAAATTCGTGATGATTAAAGGGCAGCAGCTAGGTACAAAATCTGTGATTTTTTTGAATATTTCTATATTTTATATCCTTTACAAGGTAAATGCTAAAGTAAATATACACACAAAAGAAAGCAATAAAAAGAAAATATATCCTTAATGGCAAGATCATTGAAATATGACGTATAGTTAATGAGGAGTTTATTGAATATTTCAATTAGCATCATGCGATTTTATTGAATATTTCTATTAACATCATTCTTGATGACACAAATTATATTACCTGGGCCCATCAAATGAGTTTTTTGATCGACCAAAAGTTATGGCTAATGGAGATATCACCCAATTTTTCAAAAACTCCTCTAGTGAAAAACATCAATAAAGAGACCACTGAAAAGGATAATTCAGACCCTCCTGATGTCACTATTCAAGAGACTACTGTAGAGGACGTCAAGTATATTGAAAGATTCGAGGACTTTGATAGCAAAAATCATCACTTGGTTGGATTCCAACTATTCATACTCAATTTAATGCATTTGATACTGCAAAACTTGGGGATTTTTTGTGCATATGTTTACATTATTCTTGACTTGTTAGTCTAAACCAAGAGGTCGAACAATCTATAAATGAATATCGTGCTACTCTTCAACCTATTTTGGCTCAATTAAACTAGGTAGAAATCAGTTCTAACCATATTCACCTCATAAAAATCCTCATAGGGGTATCAATCAATTTGTCCCTACTCTATTAGATCTCAACCCTCTGTCATCTCTCGACATCGTCGTTCAAGAAATTTTATTCGAGGAGCATTGTCTCCTCTTAGACTCTTGCAACCACTCATCCACGACCTGCAAATGACTCCACTTCCGGCAAAAAATTGTAAACTTCATAGTCATAAATTTGCTAATTGTCCTACCATTGAGTACATGTATTGTCACAAGCGAGGTCACATCTTGGAAAACTGTTCAGCTCACCTACCCCGCCCTCCTAGTCACTCACATAATAAACCCAAGGTCTCTCCTAAATCTAGTTCTTCATCTATTATTGTTGATACCACCCCAACTGACATCACCATACCTCCAAGTTTTTAGTTAACTTGTTGAAACAGGTGATCTCTTCCAACTTTACTACTCTTATTGTCACCCCCAGGTACTTCTTTGCTCATTGACTCGACTTGTTGTAATCATATGACATCTAATATTTCTTTGTTGTCCTATCTTATTCCTATCCAATCCTTTCCTCCAATCCACTATGTTAATGGTAATCACGTGTCTATTTCTCACATTAGCTCTGTTAATACACCCATTATAAGCTTTCCCAACACTTATCACATGCCTAATTTAACATTCAACCTCGTTTCTGTTGGCCAATTATGTGCTCCTTTCTTCTCATGGTTAGGTTCATGATCCACAAACGGGTCAGTTGATTGGTAGGAGACAAACGATCGAATGGTAGGATGATCTTTTCTTCTCATGGTTGTTAGGTTCAGGATCCGCAAACGGGCCAGGTGATTGGTACGGGACAAACGGAGGGACAATGGATGCTTATTTGAGCTCACATCTCTTCAACACTCTTGTGTTTCCACCCATCCCTGCACTAGTCATTAATAATGTTATATACCAGTGGTATATTCACCTCCATCATTCATCTTCTGATAAACTTATTAATTTAGTTTCTATTGACACTTTGAATAATATCTTTAAATTTAGTCATTTTGACTCTTTAAATTGCTAGCTTGCAAA

mRNA sequence

GCAGCAAATTTAAGAGCATTCTCGAAGGGGTCGGCGTCGGAGCGAAGCGAAAATGGGGCAGAGGTACAGGGTTTGAACAAAACGGATCTAAGGGTTGTCGGATTGGAACAAACCGGAACCAGAGCAAGTCGTCGGATTTGAAGAGCCTCATCGTCGTTGGAGCAGAACGAATCCAAACAACGAATCTCCATCGCCTTCTGCGTCAGGTACAGTGTACGGCATCTACGGATTTGAACAGAACGGATCAAATGGAGGGTCAGCAAATCTGTGAATCTGAAGGAGTCGGTTGGTACAAAATTCGTGATGATTAAAGGGCAGCAGCTAGGTTCAGGATCCGCAAACGGGCCAGGTGATTGGTACGGGACAAACGGAGGGACAATGGATGCTTATTTGAGCTCACATCTCTTCAACACTCTTGTGTTTCCACCCATCCCTGCACTAGTCATTAATAATGTTATATACCAGTGGTATATTCACCTCCATCATTCATCTTCTGATAAACTTATTAATTTAGTTTCTATTGACACTTTGAATAATATCTTTAAATTTAGTCATTTTGACTCTTTAAATTGCTAGCTTGCAAA

Coding sequence (CDS)

ATGATTAAAGGGCAGCAGCTAGGTTCAGGATCCGCAAACGGGCCAGGTGATTGGTACGGGACAAACGGAGGGACAATGGATGCTTATTTGAGCTCACATCTCTTCAACACTCTTGTGTTTCCACCCATCCCTGCACTAGTCATTAATAATGTTATATACCAGTGGTATATTCACCTCCATCATTCATCTTCTGATAAACTTATTAATTTAGTTTCTATTGACACTTTGAATAATATCTTTAAATTTAGTCATTTTGACTCTTTAAATTGCTAG

Protein sequence

MIKGQQLGSGSANGPGDWYGTNGGTMDAYLSSHLFNTLVFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC
Homology
[Close]
BLAST of MELO.jh033967.1 vs. NCBI nr
Match: XP_008453699.1 (PREDICTED: uncharacterized protein LOC103494348 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 1.53e-09
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           VFP I  LV +N I+QW++ L H+SSDKL +L S   LNN+ KFS FD LNC
Sbjct: 147 VFPAISTLVTDNTIFQWHLRLGHASSDKLRSLASTGILNNVSKFSTFDCLNC 198

[Close]
BLAST of MELO.jh033967.1 vs. NCBI nr
Match: XP_008450155.1 (PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 2.75e-09
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           VFP I A V +N I+QW++ L H+SSDKL NL S   LNN+ KFS FD LNC
Sbjct: 338 VFPAISAPVTDNTIFQWHLRLGHASSDKLRNLASSGLLNNVSKFSTFDCLNC 389

[Close]
BLAST of MELO.jh033967.1 vs. NCBI nr
Match: KAA0053979.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 2.45e-08
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 34  LFNTLVFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLN 89
           L ++ VFP I A + NN ++QW++ L H+SS+KL +L S D LNN+ KFS FD LN
Sbjct: 450 LQHSSVFPAISAPITNNTLFQWHLRLGHASSNKLHSLASTDILNNVSKFSSFDCLN 505

[Close]
BLAST of MELO.jh033967.1 vs. NCBI nr
Match: KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.75e-06
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           +FP I A + NN ++QW + L H+SS+KL +L S   LNN+ +FS FD L+C
Sbjct: 435 MFPAISASMTNNTLFQWPLRLGHASSNKLCSLTSTGLLNNVSQFSTFDCLHC 486

[Close]
BLAST of MELO.jh033967.1 vs. NCBI nr
Match: KAA0058316.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 3.77e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           VFP I A V +N ++QW++ L H+SS+KL +L S   LNN+ +F+ FD L+C
Sbjct: 441 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHC 492

[Close]
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match: A0A1S3BWW1 (uncharacterized protein LOC103494348 OS=Cucumis melo OX=3656 GN=LOC103494348 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.41e-10
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           VFP I  LV +N I+QW++ L H+SSDKL +L S   LNN+ KFS FD LNC
Sbjct: 147 VFPAISTLVTDNTIFQWHLRLGHASSDKLRSLASTGILNNVSKFSTFDCLNC 198

[Close]
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match: A0A1S3BPL0 (uncharacterized protein LOC103491828 OS=Cucumis melo OX=3656 GN=LOC103491828 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.33e-09
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           VFP I A V +N I+QW++ L H+SSDKL NL S   LNN+ KFS FD LNC
Sbjct: 338 VFPAISAPVTDNTIFQWHLRLGHASSDKLRNLASSGLLNNVSKFSTFDCLNC 389

[Close]
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match: A0A5A7UKE6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00500 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.18e-08
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 34  LFNTLVFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLN 89
           L ++ VFP I A + NN ++QW++ L H+SS+KL +L S D LNN+ KFS FD LN
Sbjct: 450 LQHSSVFPAISAPITNNTLFQWHLRLGHASSNKLHSLASTDILNNVSKFSSFDCLN 505

[Close]
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match: A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.81e-06
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           +FP I A + NN ++QW + L H+SS+KL +L S   LNN+ +FS FD L+C
Sbjct: 435 MFPAISASMTNNTLFQWPLRLGHASSNKLCSLTSTGLLNNVSQFSTFDCLHC 486

[Close]
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match: A0A5A7UVX4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006520 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.82e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0 

Query: 39  VFPPIPALVINNVIYQWYIHLHHSSSDKLINLVSIDTLNNIFKFSHFDSLNC 90
           VFP I A V +N ++QW++ L H+SS+KL +L S   LNN+ +F+ FD L+C
Sbjct: 441 VFPAISAPVTDNTLFQWHLRLGHASSNKLRSLTSTGLLNNVSQFNTFDCLHC 492

The following BLAST results are available for this feature:
BLAST of MELO.jh033967.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453699.11.53e-0957.69PREDICTED: uncharacterized protein LOC103494348 [Cucumis melo][more]
XP_008450155.12.75e-0959.62PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo][more]
KAA0053979.12.45e-0851.79Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, cata... [more]
KAA0047794.13.75e-0648.08putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0058316.13.77e-0648.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of MELO.jh033967.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BWW17.41e-1057.69uncharacterized protein LOC103494348 OS=Cucumis melo OX=3656 GN=LOC103494348 PE=... [more]
A0A1S3BPL01.33e-0959.62uncharacterized protein LOC103491828 OS=Cucumis melo OX=3656 GN=LOC103491828 PE=... [more]
A0A5A7UKE61.18e-0851.79Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A5A7TXR01.81e-0648.08Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7UVX41.82e-0648.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of MELO.jh033967.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033967.1.t1MELO.jh033967.1.t1mRNA