MELO.jh033609.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh033609.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	COP1-interacting protein 7, putative isoform 1
Location	chr07: 2753189 .. 2754505 (+)
RNA-Seq Expression	MELO.jh033609.1
Synteny	MELO.jh033609.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAGTCACCTAAGCCTGTACTTAGGAGTTCAACCATAGATCGCCTTGCAACTGCTCGTACACCTCAGAAAGTATCTTCAACTCAATCACCATCAGTTCAACCAAATAAGCCAATCTCGAGAGCAAATGGCATTAGGACTCCTACCTCAGCGGAAAAGCTCCCTAAAACTGACAGTAAGAACCTTATCTCGAACAAAGTAAAACCTTCCAATTTAAAAAACGGGCACAAGAAATTGAGTAAGGCACTTTCTTCTGATTCTTATGGCCAGACAACAACGGATGGCAGGGAAGACGTAGCAGCATTACGAGCTGAGTCAGAAATACGGAATGCAACTCAATCAATCGACAACATCGATGATGATATGGAAGATATTAAGGAGGTACACACTACCCATTCAGTCGAGAAAAATGATGAAACTTTTATTACTCAAGGAGATGCATTAGTTGACAGAAGTGGTGATGCTAATTCAAATGACAAGGTTTTGTCTGTCCTCATCGAAGATAAACTTGAACAAAATCAGTTTAAAGTTGATGATGACGATGATATCAATTTATCTAAAGCACCTTTAGTTCTTAGCGAAGAAAAAAATATTTCTAATGGTCACAATGAACTTACTCCTGGAAAGATGGTCGATTTTGTGGTTTTGTCCGACAAAGCCTTAGGCCCTTCAGTCTTGAATACTGGAGAAAATGGGGTAGCTGATCATATTGTAGTCACACCGAAATTTCTGAGATCGAAATCTCAACTCCTCCTCCCTTGAGTAACGAGATGATCTCGGAGTATACAACCCACTCCAGGAAGAAGTGATGAAAACTCTCCTAAAGCACCTAAAGGATTTAGAAAGCTGCTCTTTTTGGACGTAAAACCTGAAACACTTCCACAGAATGATCCTTCATCTCTCTATTCTCTCGTTAATTCAATTCCGTGCTAGCCGATGATTGTCTTGAGTTGTTTGTTGAGATTGAGTTGTTCAGTAAACCATGTTGGATGGACTGCTTAAATTGTTTGATTATTCTGCAGATAATACGTGAGTGATGACTGAGACGAAGCAAATAGATGATCCTTGTTCTTAATAAGGCCATGGATGATGATGCTGCCATGTTTGGATTTGTGTTGTAATTTAATATTGTTTCATTTTCTTACCCCTTTTCTATTGGAGTTGTAAAAGGTAAAGTTTCTTCATTTTTTTTCCTGAGAGTTATAAAAGGCATTGTTTCCTTATTCAGTTTGTATAATGTTATACAGTGTAATAATTGTAAGTTCTGTTCATAAATTATGTTTGTAATTCAAACAAAATAATCACTTTTGAACTGCA

mRNA sequence

AAGAAGTCACCTAAGCCTGTACTTAGGAGTTCAACCATAGATCGCCTTGCAACTGCTCGTACACCTCAGAAAGTATCTTCAACTCAATCACCATCAGTTCAACCAAATAAGCCAATCTCGAGAGCAAATGGCATTAGGACTCCTACCTCAGCGGAAAAGCTCCCTAAAACTGACAACAACAACGGATGGCAGGGAAGACGTAGCAGCATTACGAGCTGAGTCAGAAATACGGAATGCAACTCAATCAATCGACAACATCGATGATGATATGGAAGATATTAAGGAGATAATACGTGAGTGATGACTGAGACGAAGCAAATAGATGATCCTTGTTCTTAATAAGGCCATGGATGATGATGCTGCCATGTTTGGATTTGTGTTGTAATTTAATATTGTTTCATTTTCTTACCCCTTTTCTATTGGAGTTGTAAAAGGTAAAGTTTCTTCATTTTTTTTCCTGAGAGTTATAAAAGGCATTGTTTCCTTATTCAGTTTGTATAATGTTATACAGTGTAATAATTGTAAGTTCTGTTCATAAATTATGTTTGTAATTCAAACAAAATAATCACTTTTGAACTGCA

Coding sequence (CDS)

ATGGCATTAGGACTCCTACCTCAGCGGAAAAGCTCCCTAAAACTGACAACAACAACGGATGGCAGGGAAGACGTAGCAGCATTACGAGCTGAGTCAGAAATACGGAATGCAACTCAATCAATCGACAACATCGATGATGATATGGAAGATATTAAGGAGATAATACGTGAGTGA

Protein sequence

MALGLLPQRKSSLKLTTTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE

Homology

[Close]

BLAST of MELO.jh033609.1 vs. NCBI nr
Match: XP_008452485.1 (PREDICTED: uncharacterized protein LOC103493503 isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 5.19e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 57
            TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE
Sbjct: 1001 TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 1041

[Close]

BLAST of MELO.jh033609.1 vs. NCBI nr
Match: XP_008452483.1 (PREDICTED: uncharacterized protein LOC103493503 isoform X1 [Cucumis melo] >KAA0064348.1 COP1-interacting protein 7, putative isoform 1 [Cucumis melo var. makuwa] >TYK20239.1 COP1-interacting protein 7, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.10e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEI 54
            TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKE+
Sbjct: 1001 TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEV 1038

[Close]

BLAST of MELO.jh033609.1 vs. NCBI nr
Match: XP_011654080.1 (COP1-interacting protein 7 isoform X2 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 1.04e-12
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 57
            TTTDG+EDVAALRAESEIRNATQ I+NI+DDMEDIKEIIRE
Sbjct: 1001 TTTDGKEDVAALRAESEIRNATQPINNIEDDMEDIKEIIRE 1041

[Close]

BLAST of MELO.jh033609.1 vs. NCBI nr
Match: XP_038900019.1 (COP1-interacting protein 7 isoform X2 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 6.80e-12
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 57
            TTTDG+ED AAL+AESEI NATQ IDNIDDDMEDIKEIIRE
Sbjct: 1001 TTTDGKEDAAALQAESEIPNATQPIDNIDDDMEDIKEIIRE 1041

[Close]

BLAST of MELO.jh033609.1 vs. NCBI nr
Match: KAG6607865.1 (COP1-interacting protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 3.24e-11
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 1   MALGLLPQRKSSLKLTTTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 57
           +A    PQ+KSSL LTTT DG+EDV AL AES + NATQ I+N+ DD+E I+EIIRE
Sbjct: 902 LATARTPQKKSSLNLTTTMDGKEDVVALPAESAVPNATQPIENVIDDIEVIEEIIRE 958

[Close]

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL
Match: A0A1S3BUR1 (uncharacterized protein LOC103493503 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493503 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.51e-15
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 57
            TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE
Sbjct: 1001 TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEIIRE 1041

[Close]

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL
Match: A0A5A7V9S9 (COP1-interacting protein 7, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003780 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.98e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEI 54
            TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKE+
Sbjct: 1001 TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEV 1038

[Close]

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL
Match: A0A1S3BTY6 (uncharacterized protein LOC103493503 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493503 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.98e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEI 54
            TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKE+
Sbjct: 1001 TTTDGREDVAALRAESEIRNATQSIDNIDDDMEDIKEV 1038

[Close]

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL
Match: A0A6J1CE03 (uncharacterized protein LOC111010382 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010382 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.00e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 17   TTTDGREDVAALRAESEIRNATQSI-DNIDDDMEDIKEIIRE 57
            T TDG+EDVAAL AES + NATQ I D   DD+EDIKEIIRE
Sbjct: 1004 TKTDGKEDVAALPAESAVXNATQPIEDGAVDDVEDIKEIIRE 1045

[Close]

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL
Match: A0A6J1F5L0 (COP1-interacting protein 7-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442574 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.81e-05
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 17  TTTDGREDVAALRAES--EIRNATQSIDNIDDDMEDIKEI 54
           TTTDG+ D AAL AES   I NATQ IDN+DD+MED+KE+
Sbjct: 956 TTTDGKNDEAALPAESMIPIPNATQPIDNVDDNMEDVKEL 995

The following BLAST results are available for this feature:

BLAST of MELO.jh033609.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452485.1	5.19e-15	100.00	PREDICTED: uncharacterized protein LOC103493503 isoform X2 [Cucumis melo]	[more]
XP_008452483.1	4.10e-13	97.37	PREDICTED: uncharacterized protein LOC103493503 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_011654080.1	1.04e-12	90.24	COP1-interacting protein 7 isoform X2 [Cucumis sativus]	[more]
XP_038900019.1	6.80e-12	87.80	COP1-interacting protein 7 isoform X2 [Benincasa hispida]	[more]
KAG6607865.1	3.24e-11	63.16	COP1-interacting protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO.jh033609.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BUR1	2.51e-15	100.00	uncharacterized protein LOC103493503 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7V9S9	1.98e-13	97.37	COP1-interacting protein 7, putative isoform 1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BTY6	1.98e-13	97.37	uncharacterized protein LOC103493503 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CE03	8.00e-06	71.43	uncharacterized protein LOC111010382 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1F5L0	2.81e-05	67.50	COP1-interacting protein 7-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of MELO.jh033609.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh033609.1.t1	MELO.jh033609.1.t1	mRNA