MELO.jh031964.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031964.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr10: 3906112 .. 3906884 (-)
RNA-Seq ExpressionMELO.jh031964.1
SyntenyMELO.jh031964.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCAAACACTAACAAATAAAATTTTACCTCAAAAGCTTTTAAGAGAGGAAGATCGATGATGAATGGGTTGTTAGCTTGGATTCCAGCGATGGCTTCGGTCAGGCCAAGGCGCTGGAAAGACTGTCGGACGGTGAGGGAATTCAAAGACTCATTCGTGGCTAAAAACAGTGGCCAAGTGAGTCTGACGCAGTTGAATCCCAACCCCTCAATTCTGTTTGAAATCTCCTCGATCGGCTGCTTCGAAAGCCCCTCCGCCACCACTGCCTCCAAATGCGACACCCAATTTACACATCTTAGTTTCACTCTTTCCCCTTCTCCGTCCACGATCCACCGTGTATCGGTGTGTAACGGCAGCCCCACTGCCGCCGAGGCCGCGACACACCACACGGCCAAAAGAATCAGTAACCCCTTCATCATCACTTCAAATTAAACTTGTGGGGGTGGATTTTTTGTTTGTTTATAATTGGAAAATTGGGGAATTGCTGGATGAACTTACAAGGCAAAATAGAATTGAGTTTTACAAGTCTTTGAAGTTACTGATTGAGAATTGGGTTAGCTTGTTTGGCTGGGAATTGACGACATTGAAGCTTGAAAGGCAAAGTGAAATGGGTTTTATGAATGACAGTATATGATTCATCATCACTTCAAGTTAGGTATTGACTTTCAATTTATTCCCATTTATTATGAATTTAGTTTATGTGTATTATCATTGGAACCATATTATCATGGATGGATTAAGCTTTGAAGAAAAACAAAGCTGATTTAAAAGTC

mRNA sequence

AATCCAAACACTAACAAATAAAATTTTACCTCAAAAGCTTTTAAGAGAGGAAGATCGATGATGAATGGGTTGTTAGCTTGGATTCCAGCGATGGCTTCGGTCAGGCCAAGGCGCTGGAAAGACTGTCGGACGGTGAGGGAATTCAAAGACTCATTCGTGGCTAAAAACAGTGGCCAAGTGAGTCTGACGCAGTTGAATCCCAACCCCTCAATTCTGTTTGAAATCTCCTCGATCGGCTGCTTCGAAAGCCCCTCCGCCACCACTGCCTCCAAATGCGACACCCAATTTACACATCTTAGTTTCACTCTTTCCCCTTCTCCGTCCACGATCCACCGTGTATCGGTGTGTAACGGCAGCCCCACTGCCGCCGAGGCCGCGACACACCACACGGCCAAAAGAATCAGTAACCCCTTCATCATCACTTCAAATTAAACTTGTGGGGGTGGATTTTTTGTTTGTTTATAATTGGAAAATTGGGGAATTGCTGGATGAACTTACAAGGCAAAATAGAATTGAGTTTTACAAGTCTTTGAAGTTACTGATTGAGAATTGGGTTAGCTTGTTTGGCTGGGAATTGACGACATTGAAGCTTGAAAGGCAAAGTGAAATGGGTTTTATGAATGACAGTATATGATTCATCATCACTTCAAGTTAGGTATTGACTTTCAATTTATTCCCATTTATTATGAATTTAGTTTATGTGTATTATCATTGGAACCATATTATCATGGATGGATTAAGCTTTGAAGAAAAACAAAGCTGATTTAAAAGTC

Coding sequence (CDS)

ATGATGAATGGGTTGTTAGCTTGGATTCCAGCGATGGCTTCGGTCAGGCCAAGGCGCTGGAAAGACTGTCGGACGGTGAGGGAATTCAAAGACTCATTCGTGGCTAAAAACAGTGGCCAAGTGAGTCTGACGCAGTTGAATCCCAACCCCTCAATTCTGTTTGAAATCTCCTCGATCGGCTGCTTCGAAAGCCCCTCCGCCACCACTGCCTCCAAATGCGACACCCAATTTACACATCTTAGTTTCACTCTTTCCCCTTCTCCGTCCACGATCCACCGTGTATCGGTGTGTAACGGCAGCCCCACTGCCGCCGAGGCCGCGACACACCACACGGCCAAAAGAATCAGTAACCCCTTCATCATCACTTCAAATTAA

Protein sequence

MMNGLLAWIPAMASVRPRRWKDCRTVREFKDSFVAKNSGQVSLTQLNPNPSILFEISSIGCFESPSATTASKCDTQFTHLSFTLSPSPSTIHRVSVCNGSPTAAEAATHHTAKRISNPFIITSN
Homology
BLAST of MELO.jh031964.1 vs. NCBI nr
Match: KAG0456058.1 (hypothetical protein HPP92_023846 [Vanilla planifolia])

HSP 1 Score: 96.3 bits (238), Expect = 1.32e-22
Identity = 55/106 (51.89%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 12  MASVRPRRWKDCRTVREFKDSFVAKNSGQVSLTQLNPNPSILFEISSIGCFESPSATTAS 71
           M S+RPR  KDC TVR+ ++SFV +  G VSLTQLNP  ++L E+ S GCF SPSAT AS
Sbjct: 1   MDSLRPREKKDCFTVRDARESFVTRKRGHVSLTQLNPMEAMLLEMKSRGCFPSPSATMAS 60

Query: 72  KCDTQFTHLSFTLSPSPSTIHRVSVCNGS---PTAAEAATHHTAKR 114
           +C+ Q T  SFTL P  ST HR  V  G    P A E A     K+
Sbjct: 61  RCEAQDTQASFTLCPDSSTTHRELVERGGKAPPVAGEGAEKSKEKK 106

BLAST of MELO.jh031964.1 vs. ExPASy TrEMBL
Match: A0A4D9C117 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_013636 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 9.28e-27
Identity = 63/104 (60.58%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 2   MNGLLAWIPAMASVRPRRWKDCRTVREFKDSFVAKNSGQVSLTQLNPNPSILFEISSIGC 61
           M GLL   PAMAS  PR  KDC TVRE   SFV K SGQVSLTQLNP   I  +I S G 
Sbjct: 1   MEGLLICKPAMASKSPRFLKDCLTVREANVSFVNKKSGQVSLTQLNPKSIISEDICSAGF 60

Query: 62  FESPSATTASKCDTQFTHLSFTLSPSPSTIHRVSVCNGSPTAAE 105
             SPSAT  S+CD QFTH SF   P  STIHR SV +GS  A E
Sbjct: 61  LLSPSATITSRCDGQFTHASFARCPDSSTIHRDSVDSGSAAAEE 104

BLAST of MELO.jh031964.1 vs. ExPASy TrEMBL
Match: A0A6N2N309 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS457236 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.22e-16
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 32  SFVAKNSGQVSLTQLNPNPSILFEISSIGCFESPSATTASKCDTQFTHLSFTLSPSPSTI 91
           S V K +GQVSLTQLNP   I   ++S+GC  SPSAT  S+CDTQ TH SFTL P  STI
Sbjct: 6   SLVTKKTGQVSLTQLNPIDKIRLAMASMGCLLSPSATMTSRCDTQLTHASFTLCPFSSTI 65

Query: 92  HRVSVCNGS 100
           HR SV  GS
Sbjct: 66  HRESVDRGS 74

BLAST of MELO.jh031964.1 vs. ExPASy TrEMBL
Match: A0A0D9W6A5 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.30e-06
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 41  VSLTQLNPNPSILFEISSIGCFESPSATTASKCDTQFTHLSFTLSPSPSTIHRVSVCN-G 100
           V  TQL P  +    ++  GC  SPSA+  S+CD QFTH SFT  P  STIHR +V + G
Sbjct: 6   VRRTQLKPMDTTSLAMAPTGCLPSPSASIGSRCDGQFTHASFTRFPPSSTIHRDTVDSVG 65

Query: 101 SPTAA 104
           +P AA
Sbjct: 66  NPAAA 70

BLAST of MELO.jh031964.1 vs. ExPASy TrEMBL
Match: A0A0A9RYQ8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.00e-04
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 60  GCFESPSATTASKCDTQFTHLSFTLSPSPSTIHRVSVCNGSPTAAEAATHHTAK 113
           GC  SPSA+  S+CD QFTH SFT  P  STIHR +V + +   A +  H TA+
Sbjct: 12  GCLPSPSASMGSRCDGQFTHASFTRFPLSSTIHRDAV-DSAAALAGSWRHATAR 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG0456058.11.32e-2251.89hypothetical protein HPP92_023846 [Vanilla planifolia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4D9C1179.28e-2760.58Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_013636 PE=4 SV=1[more]
A0A6N2N3091.22e-1662.32Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS4572... [more]
A0A0D9W6A51.30e-0649.23Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1[more]
A0A0A9RYQ84.00e-0450.00Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031964.1.t1MELO.jh031964.1.t1mRNA