MELO.jh031857.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031857.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMATH domain and coiled-coil domain-containing protein
Locationchr09: 17482123 .. 17482945 (+)
RNA-Seq ExpressionMELO.jh031857.1
SyntenyMELO.jh031857.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCAATTCCCTCCTCTCATATTTTCGCTTCCTCTCATGTTTTGAGCATACAGTTTTTGTTTCTATTCCTTGTTTCGATGAATGCACGTCAGTATTGGGAAGTTGTGTTAACCTTGGGGAGCAACCGACATCACGATTAGCACCACGGTCAGCCGAACTTGCTTTCAAGGTAGTGGTTCGTCACGACACAACAACTACCTTGATCGATATTCAAAACCTTTCCAACAGAACAAAATGGTTCCAGTTTCATCGCCAACAAAGGCACTCAACAATCCACGTTTGTCGAAGGTGCTGAGGCACCGATTTGGTTACTTCATATACTCTTTTTTTAAACACTAAAAGTGTGATCTGTATTAATAACTTTCAAGGTTGGTTGGTGGTGGCTAGAGTTGGTCGCTGAAAATGTTCGCCAGTGAGATCGCCACAAGTTGTGATCAGAGGTTGGTCGGCTCTAGTCGCTAGAGGTGACGGCGAAGTTGGGCAATGGCAGTTACTAGGAAGTGGGTGTTTGAAAGTTGGATGGCGGACTTCCTAGATTAAATCAGAAAGAAAAACAAGTGTAAACCATGGGCTTGCTATAATACTTCTTCATCCAAAGCTACTCTATTTGTCCATAATGATCGTGATTATCGGGCCCACAATATTATCCTGTCATAAACTCCCATTGCAACCAGGCTTGCAATCTCAAAAAGAAATGTATCGTTAATTATTTTCAATGCTTTGGTACAAGAAGTTTAGAGTTTAGGGTTGTAAACAGACTTAGTTTATTCAACGTAGTCTATTGAAACTTTGAAGTGTGCGTGTAATTATAGCTACTAATTTA

mRNA sequence

TTCCAATTCCCTCCTCTCATATTTTCGCTTCCTCTCATGTTTTGAGCATACAGTTTTTGTTTCTATTCCTTGTTTCGATGAATGCACGTCAGTATTGGGAAGTTGTGTTAACCTTGGGGAGCAACCGACATCACGATTAGCACCACGGTCAGCCGAACTTGCTTTCAAGGTAGTGGTTCGTCACGACACAACAACTACCTTGATCGATATTCAAAACCTTTCCAACAGAACAAAATGGTTCCAGTTTCATCGCCAACAAAGGCACTCAACAATCCACGTTTGTCGAAGGTGCTGAGGCACCGATTTGGTTACTTCATATACTCTTTTTTTAAACACTAAAAGTGTGATCTGTATTAATAACTTTCAAGGTTGGTTGGTGGTGGCTAGAGTTGGTCGCTGAAAATGTTCGCCAGTGAGATCGCCACAAGTTGTGATCAGAGGTTGGTCGGCTCTAGTCGCTAGAGGTGACGGCGAAGTTGGGCAATGGCAGTTACTAGGAAGTGGGTGTTTGAAAGTTGGATGGCGGACTTCCTAGATTAAATCAGAAAGAAAAACAAGTGTAAACCATGGGCTTGCTATAATACTTCTTCATCCAAAGCTACTCTATTTGTCCATAATGATCGTGATTATCGGGCCCACAATATTATCCTGTCATAAACTCCCATTGCAACCAGGCTTGCAATCTCAAAAAGAAATGTATCGTTAATTATTTTCAATGCTTTGGTACAAGAAGTTTAGAGTTTAGGGTTGTAAACAGACTTAGTTTATTCAACGTAGTCTATTGAAACTTTGAAGTGTGCGTGTAATTATAGCTACTAATTTA

Coding sequence (CDS)

ATGGTTCCAGTTTCATCGCCAACAAAGGCACTCAACAATCCACGTTTGTCGAAGGTGCTGAGGCACCGATTTGGTTACTTCATATACTCTTTTTTTAAACACTAA

Protein sequence

MVPVSSPTKALNNPRLSKVLRHRFGYFIYSFFKH
Homology
[Close]
BLAST of MELO.jh031857.1 vs. NCBI nr
Match: KAA0050214.1 (MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa] >TYJ98194.1 MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 4.99e-06
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  MVPVSSPTKALNNPRLSKVLRHRF 24
          MVPVSSPTKALNNPRLSKVLRHRF
Sbjct: 1  MVPVSSPTKALNNPRLSKVLRHRF 24

[Close]
BLAST of MELO.jh031857.1 vs. ExPASy TrEMBL
Match: A0A5D3BGH9 (MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00850 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.42e-06
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1  MVPVSSPTKALNNPRLSKVLRHRF 24
          MVPVSSPTKALNNPRLSKVLRHRF
Sbjct: 1  MVPVSSPTKALNNPRLSKVLRHRF 24

The following BLAST results are available for this feature:
BLAST of MELO.jh031857.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050214.14.99e-06100.00MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa]... [more]
BLAST of MELO.jh031857.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh031857.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BGH92.42e-06100.00MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuw... [more]
BLAST of MELO.jh031857.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031857.1.t1MELO.jh031857.1.t1mRNA