MELO.jh031734.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031734.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr08: 32082848 .. 32083036 (-)
RNA-Seq Expression	MELO.jh031734.1
Synteny	MELO.jh031734.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGATCAAATAAGTGCGGGAACGTATGTGGTGGAGCGAAGTTGGGGCGGCCATTCGTGGGGGATCTACTACGCGAAAGTTTGCTATGGACGTCAGGGGAGGGAACGTCATATGTGGTGGTGCCGACAAGTCGATTGATATCCCTGTGGTGGCACGACCGAAGCTTGTGCGTGAACGTCGTCTGTGA

mRNA sequence

AAAGAGATCAAATAAGTGCGGGAACGTATGTGGTGGAGCGAAGTTGGGGCGGCCATTCGTGGGGGATCTACTACGCGAAAGTTTGCTATGGACGTCAGGGGAGGGAACGTCATATGTGGTGGTGCCGACAAGTCGATTGATATCCCTGTGGTGGCACGACCGAAGCTTGTGCGTGAACGTCGTCTGTGA

Coding sequence (CDS)

ATGTGGTGGAGCGAAGTTGGGGCGGCCATTCGTGGGGGATCTACTACGCGAAAGTTTGCTATGGACGTCAGGGGAGGGAACGTCATATGTGGTGGTGCCGACAAGTCGATTGATATCCCTGTGGTGGCACGACCGAAGCTTGTGCGTGAACGTCGTCTGTGA

Protein sequence

MWWSEVGAAIRGGSTTRKFAMDVRGGNVICGGADKSIDIPVVARPKLVRERRL

Homology

[Close]

BLAST of MELO.jh031734.1 vs. NCBI nr
Match: KAA0062347.1 (hypothetical protein E6C27_scaffold154G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.69e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 13  GSTTRKFAMDVRGGNVICGGADKSIDIPVVARPKLVRERRL 53
           GST RK  MD+RGGNV+ GGADKSIDIPVVARPKLVRER L
Sbjct: 74  GSTARKSVMDIRGGNVVYGGADKSIDIPVVARPKLVRERCL 114

[Close]

BLAST of MELO.jh031734.1 vs. NCBI nr
Match: KAA0049608.1 (uncharacterized protein E6C27_scaffold163G00610 [Cucumis melo var. makuwa] >TYK15966.1 uncharacterized protein E5676_scaffold94G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.32e-07
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 21 MDVRGGNVICGGADKSIDIPVVARPKLVRERRL 53
          MDVRGGN ICGG DKSIDIP+VA  KLV ERRL
Sbjct: 1  MDVRGGNAICGGVDKSIDIPMVAPLKLVSERRL 33

[Close]

BLAST of MELO.jh031734.1 vs. ExPASy TrEMBL
Match: A0A5A7V5X7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001090 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.30e-13
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 0


Query: 13  GSTTRKFAMDVRGGNVICGGADKSIDIPVVARPKLVRERRL 53
           GST RK  MD+RGGNV+ GGADKSIDIPVVARPKLVRER L
Sbjct: 74  GSTARKSVMDIRGGNVVYGGADKSIDIPVVARPKLVRERCL 114

[Close]

BLAST of MELO.jh031734.1 vs. ExPASy TrEMBL
Match: A0A5A7U2Z3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00860 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.38e-08
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 21 MDVRGGNVICGGADKSIDIPVVARPKLVRERRL 53
          MDVRGGN ICGG DKSIDIP+VA  KLV ERRL
Sbjct: 1  MDVRGGNAICGGVDKSIDIPMVAPLKLVSERRL 33

The following BLAST results are available for this feature:

BLAST of MELO.jh031734.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062347.1	2.69e-13	82.93	hypothetical protein E6C27_scaffold154G001090 [Cucumis melo var. makuwa]	[more]
KAA0049608.1	1.32e-07	81.82	uncharacterized protein E6C27_scaffold163G00610 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of MELO.jh031734.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031734.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5X7	1.30e-13	82.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2Z3	6.38e-08	81.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO.jh031734.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031734.1.t1	MELO.jh031734.1.t1	mRNA