MELO.jh030911.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh030911.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr05: 5176562 .. 5177192 (+)
RNA-Seq Expression	MELO.jh030911.1
Synteny	MELO.jh030911.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTTAGTCCTTCCTCACCTTCATCGAACTCTTGTTCTCCTTCATTTGGCTCATGTCCCTGTCCTTTCGATGGTTTCCCATCTCCTACTTTGTCTCGTCGGAGAATCTTCCAGGCGAGGTGGATCTTTCAGGAATCTACATGTTCATTTGCACATCTGATCTTGAAAAAGAGCTCGACGATGGAGGTGAACACGTTTAGACATTTTTGTGTTTGCTAAATTATGTTGGAATATAATTAAGAAGTTGATAAATCTTTAACTATAAAAATGAGTCGCCGTGCAATCCCCAACACATAGGAACTACTTTTCAGTCATTTCAGTTGTTGAAGTATTAGTTACGTGTTCTTAGAACTATATAACTTGTCTATCATATTGTGTTGACCAACTAGTGGAGAACCCTGTAGTGTACTATCAAAGTTCAAAGTTGGCTGTAGGTAACCTTCCTACCCAAATACATGCTGGTAGTTTTAATCGAACTCTAGTTTTTGACATGTAGGTTGTATTGTGTCACAAAAATCTATTTTTATTTAGAAAACCTTTTTTGTGTTATCTAAAATGCAACAAGTTGTTGAAATGAGCATATTATATTGTATTATACAATTCAAATGAATATGAATAATATTAGTCTTTTT

mRNA sequence

ACTTTAGTCCTTCCTCACCTTCATCGAACTCTTGTTCTCCTTCATTTGGCTCATGTCCCTGTCCTTTCGATGGTTTCCCATCTCCTACTTTGTCTCGTCGGAGAATCTTCCAGGCGAGGTGGATCTTTCAGGAATCTACATGTTCATTTGCACATCTGATCTTGAAAAAGAGCTCGACGATGGAGGTGAACACGTTTAGACATTTTTGTGTTTGCTAAATTATGTTGGAATATAATTAAGAAGTTGATAAATCTTTAACTATAAAAATGAGTCGCCGTGCAATCCCCAACACATAGGAACTACTTTTCAGTCATTTCAGTTGTTGAAGTATTAGTTACGTGTTCTTAGAACTATATAACTTGTCTATCATATTGTGTTGACCAACTAGTGGAGAACCCTGTAGTGTACTATCAAAGTTCAAAGTTGGCTGTAGGTAACCTTCCTACCCAAATACATGCTGGTAGTTTTAATCGAACTCTAGTTTTTGACATGTAGGTTGTATTGTGTCACAAAAATCTATTTTTATTTAGAAAACCTTTTTTGTGTTATCTAAAATGCAACAAGTTGTTGAAATGAGCATATTATATTGTATTATACAATTCAAATGAATATGAATAATATTAGTCTTTTT

Coding sequence (CDS)

ATGTCCCTGTCCTTTCGATGGTTTCCCATCTCCTACTTTGTCTCGTCGGAGAATCTTCCAGGCGAGGTGGATCTTTCAGGAATCTACATGTTCATTTGCACATCTGATCTTGAAAAAGAGCTCGACGATGGAGGTGAACACGTTTAG

Protein sequence

MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKELDDGGEHV

Homology

[Close]

BLAST of MELO.jh030911.1 vs. NCBI nr
Match: XP_038876182.1 (cellulose synthase-like protein G1 isoform X2 [Benincasa hispida])

HSP 1 Score: 52.0 bits (123), Expect = 5.92e-06
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++ SFRW P+S  VS ENLPGE +L G+ +FICT+D  KE
Sbjct: 73  LAQSFRWRPVSRSVSPENLPGEAELPGVDVFICTADPAKE 112

[Close]

BLAST of MELO.jh030911.1 vs. NCBI nr
Match: XP_038876181.1 (cellulose synthase-like protein G1 isoform X1 [Benincasa hispida])

HSP 1 Score: 52.0 bits (123), Expect = 5.92e-06
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++ SFRW P+S  VS ENLPGE +L G+ +FICT+D  KE
Sbjct: 73  LAQSFRWRPVSRSVSPENLPGEAELPGVDVFICTADPAKE 112

[Close]

BLAST of MELO.jh030911.1 vs. NCBI nr
Match: EOY05950.1 (Cellulose synthase like G2, putative isoform 2, partial [Theobroma cacao])

HSP 1 Score: 47.0 bits (110), Expect = 3.49e-04
Identity = 18/40 (45.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++L+FRW P+S  VS + +P ++DL G+ +F+CT+D +KE
Sbjct: 69  LTLAFRWQPLSRSVSVDKIPADMDLPGLDVFVCTADPQKE 108

[Close]

BLAST of MELO.jh030911.1 vs. NCBI nr
Match: XP_007035023.2 (PREDICTED: cellulose synthase-like protein G2 [Theobroma cacao])

HSP 1 Score: 47.0 bits (110), Expect = 3.49e-04
Identity = 18/40 (45.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++L+FRW P+S  VS + +P ++DL G+ +F+CT+D +KE
Sbjct: 69  LTLAFRWQPLSRSVSVDKIPADMDLPGLDVFVCTADPQKE 108

[Close]

BLAST of MELO.jh030911.1 vs. NCBI nr
Match: EOY05949.1 (Cellulose synthase, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 47.0 bits (110), Expect = 3.49e-04
Identity = 18/40 (45.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++L+FRW P+S  VS + +P ++DL G+ +F+CT+D +KE
Sbjct: 69  LTLAFRWQPLSRSVSVDKIPADMDLPGLDVFVCTADPQKE 108

[Close]

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL
Match: A0A061ELL7 (Cellulose synthase like G2, putative isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_020810 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.69e-04
Identity = 18/40 (45.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++L+FRW P+S  VS + +P ++DL G+ +F+CT+D +KE
Sbjct: 69  LTLAFRWQPLSRSVSVDKIPADMDLPGLDVFVCTADPQKE 108

[Close]

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL
Match: A0A061EUI9 (Cellulose synthase, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020810 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.69e-04
Identity = 18/40 (45.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           ++L+FRW P+S  VS + +P ++DL G+ +F+CT+D +KE
Sbjct: 69  LTLAFRWQPLSRSVSVDKIPADMDLPGLDVFVCTADPQKE 108

[Close]

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL
Match: A0A162ANV3 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012529 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.69e-04
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 2   SLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           S SFRW P+S  V  ENL GE DL G+ +F+CT+D  KE
Sbjct: 78  SQSFRWRPLSRSVFPENLSGEKDLPGLDIFVCTADPSKE 116

[Close]

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL
Match: A0A314YNP8 (Cellulose synthase-like protein G2 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16110 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.17e-04
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   MSLSFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           +S SFRW P+S     E LPG+  L G+ +FICT+D EKE
Sbjct: 75  LSQSFRWSPVSRTAFPERLPGDDKLPGVDVFICTADPEKE 114

[Close]

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL
Match: A0A2G2ZV13 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_07924 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.34e-04
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 0


Query: 4   SFRWFPISYFVSSENLPGEVDLSGIYMFICTSDLEKE 40
           SFRW P++  +  ENLP E +L G+ +FICT+D  KE
Sbjct: 70  SFRWRPVARSIRPENLPAETELPGVDVFICTADPTKE 106

The following BLAST results are available for this feature:

BLAST of MELO.jh030911.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876182.1	5.92e-06	57.50	cellulose synthase-like protein G1 isoform X2 [Benincasa hispida]	[more]
XP_038876181.1	5.92e-06	57.50	cellulose synthase-like protein G1 isoform X1 [Benincasa hispida]	[more]
EOY05950.1	3.49e-04	45.00	Cellulose synthase like G2, putative isoform 2, partial [Theobroma cacao]	[more]
XP_007035023.2	3.49e-04	45.00	PREDICTED: cellulose synthase-like protein G2 [Theobroma cacao]	[more]
EOY05949.1	3.49e-04	45.00	Cellulose synthase, putative isoform 1 [Theobroma cacao]	[more]

BLAST of MELO.jh030911.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A061ELL7	1.69e-04	45.00	Cellulose synthase like G2, putative isoform 2 (Fragment) OS=Theobroma cacao OX=...	[more]
A0A061EUI9	1.69e-04	45.00	Cellulose synthase, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_020810 ...	[more]
A0A162ANV3	1.69e-04	56.41	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012529 ...	[more]
A0A314YNP8	3.17e-04	52.50	Cellulose synthase-like protein G2 OS=Prunus yedoensis var. nudiflora OX=2094558...	[more]
A0A2G2ZV13	4.34e-04	51.35	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_07924 PE=4 SV=1	[more]

BLAST of MELO.jh030911.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh030911.1.t1	MELO.jh030911.1.t1	mRNA