MELO.jh030747.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030747.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Locationchr04: 18249748 .. 18250165 (-)
RNA-Seq ExpressionMELO.jh030747.1
SyntenyMELO.jh030747.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTTAGGAGCTGTAGTTGTGTAAATTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATTGGTAAATTTTGAGGTACACTTCATGATGTGTTTGACTAGCTGTGTTTGACTAGCCTAGGATCCGATGTGTTTTGTGGCATGTACAATAGTTTATATACTAGATTGGTAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAATAACGTTGTACGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACACAATAGCTTCCCATTAATTACCATAACTTTCTTATCTATATTTGGTTTATTCTCACAACCCTATAAATAGAGGTTGTAAAGATCATTTGTATACCCACCACAATTGAGTTCAA

mRNA sequence

AGCTTTAGGAGCTGTAGTTGTGTAAATTTTGTTGGTTATATTTTGATTAAGGTGTCTTTAGGTTTACTCGTGAAATTGGTAAATTTTGAGGTACACTTCATGATGTGTTTGACTAGCTGTGTTTGACTAGCCTAGGATCCGATGTGTTTTGTGGCATGTACAATAGTTTATATACTAGATTGGTAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAATAACGTTGTACGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACACAATAGCTTCCCATTAATTACCATAACTTTCTTATCTATATTTGGTTTATTCTCACAACCCTATAAATAGAGGTTGTAAAGATCATTTGTATACCCACCACAATTGAGTTCAA

Coding sequence (CDS)

ATGTACAATAGTTTATATACTAGATTGGTAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGAATAACGTTGTACGTCGGCTTCACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGACACAATAG

Protein sequence

MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVTQ
Homology
[Close]
BLAST of MELO.jh030747.1 vs. NCBI nr
Match: KAA0056677.1 (hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 8.05e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYTRL SSSHESFKQSRQIQVQ +VVRRLHAIFRSKVAGSPGGGVT
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. NCBI nr
Match: KAA0056192.1 (hypothetical protein E6C27_scaffold431G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.02e-21
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYTRL SSSHESFKQSRQIQVQ NVVRR HAIFRSKVAGSPGGGVT
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQVQKNVVRRFHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. NCBI nr
Match: KAA0045512.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 4.45e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYT+L SSSHES+KQSRQIQVQ +VVRRLHAIFRS VAGSPGGGVT
Sbjct: 1  MYNSLYTKLASSSHESYKQSRQIQVQKSVVRRLHAIFRSNVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. NCBI nr
Match: KAA0032947.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.09e-20
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYTRL SSSHESFKQSRQIQ+Q +VVRRLHAIFRSKVAGSPGGGVT
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQIQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. NCBI nr
Match: KAA0046087.1 (hypothetical protein E6C27_scaffold157G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 7.41e-20
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGV 49
          MYNSLYTRL SSSHESFKQSRQIQVQ +VVRRLHAIFRSK+AGSPG GV
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKLAGSPGAGV 49

[Close]
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match: A0A5A7UPX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold73G00010 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.90e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYTRL SSSHESFKQSRQIQVQ +VVRRLHAIFRSKVAGSPGGGVT
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match: A0A5A7UJY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold431G00190 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.93e-22
Identity = 47/50 (94.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYTRL SSSHESFKQSRQIQVQ NVVRR HAIFRSKVAGSPGGGVT
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQVQKNVVRRFHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ76 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1202G00650 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.16e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYT+L SSSHES+KQSRQIQVQ +VVRRLHAIFRS VAGSPGGGVT
Sbjct: 1  MYNSLYTKLASSSHESYKQSRQIQVQKSVVRRLHAIFRSNVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match: A0A5A7SUD6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00210 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.01e-20
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGVT 50
          MYNSLYTRL SSSHESFKQSRQIQ+Q +VVRRLHAIFRSKVAGSPGGGVT
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQIQKSVVRRLHAIFRSKVAGSPGGGVT 50

[Close]
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match: A0A5A7TW18 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00080 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.59e-20
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 

Query: 1  MYNSLYTRLVSSSHESFKQSRQIQVQNNVVRRLHAIFRSKVAGSPGGGV 49
          MYNSLYTRL SSSHESFKQSRQIQVQ +VVRRLHAIFRSK+AGSPG GV
Sbjct: 1  MYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKLAGSPGAGV 49

The following BLAST results are available for this feature:
BLAST of MELO.jh030747.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056677.18.05e-2294.00hypothetical protein E6C27_scaffold73G00010 [Cucumis melo var. makuwa][more]
KAA0056192.11.02e-2194.00hypothetical protein E6C27_scaffold431G00190 [Cucumis melo var. makuwa][more]
KAA0045512.14.45e-2188.00reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0032947.12.09e-2092.00reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0046087.17.41e-2089.80hypothetical protein E6C27_scaffold157G00080 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh030747.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UPX33.90e-2294.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UJY24.93e-2294.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TQ762.16e-2188.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold12... [more]
A0A5A7SUD61.01e-2092.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26... [more]
A0A5A7TW183.59e-2089.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO.jh030747.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030747.1.t1MELO.jh030747.1.t1mRNA