MELO.jh030043.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh030043.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr01: 6406431 .. 6406809 (-)
RNA-Seq Expression	MELO.jh030043.1
Synteny	MELO.jh030043.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTGGTCGTGGAAATAATAATGAAGAGAAAGAACAAAGGAGCCAACAAAATTGGTGTAGACGAGGTCGAGATCGTGGAAGAGGAGGTCGCTCAAATTGTCCAATTGTCGAGTGTTACAATTGTGGAAAATATGAACACTACACAAAGGATTGCATGCCGAGAAGAAGGTGGAAGAAAATACAAATTTAGTCATAGAAGAAAAGACCCAAAATGACGGCATTCTCATGATAGCCCATGAAGGTACCACTCCAGATAGCAACATGGTGTGGTATCTTGACACCGGTGTAAGCAATCATATGTATGGGTGTGAAGATTTTTTTGTTGATATGCAGGAGATAGAAAATGGACATGTGTCTTTTGGAGATGCATCAAAG

mRNA sequence

ATGGTCGTGGTCGTGGAAATAATAATGAAGAGAAAGAACAAAGGAGCCAACAAAATTGGTGTAGACGAGGTCGAGATCGTGGAAGAGGAGGTCGCTCAAATTGTCCAATTGTCGAGTGTTACAATTGTGGAAAATATGAACACTACACAAAGGATTGCATGCCGAGAAGAAGGTGGAAGAAAATACAAATTTAGTCATAGAAGAAAAGACCCAAAATGACGGCATTCTCATGATAGCCCATGAAGGTACCACTCCAGATAGCAACATGGTGTGGTATCTTGACACCGGTGTAAGCAATCATATGTATGGGTGTGAAGATTTTTTTGTTGATATGCAGGAGATAGAAAATGGACATGTGTCTTTTGGAGATGCATCAAAG

Coding sequence (CDS)

ATGGTCGTGGTCGTGGAAATAATAATGAAGAGAAAGAACAAAGGAGCCAACAAAATTGGTGTAGACGAGGTCGAGATCGTGGAAGAGGAGGTCGCTCAAATTGTCCAATTGTCGAGTGTTACAATTGTGGAAAATATGAACACTACACAAAGGATTGCATGCCGAGAAGAAGGTGGAAGAAAATACAAATTTAGTCATAGAAGAAAAGACCCAAAATGA

Protein sequence

MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIACREEGGRKYKFSHRRKDPK

Homology

[Close]

BLAST of MELO.jh030043.1 vs. NCBI nr
Match: KAA0052859.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04366.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 2.18e-26
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1   MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIACREEG 58
           MVVVVEIIMKRKNKGANKIGVDEVEIVEEE+AQIVQLSSVTIVENMNTTQRIACREEG
Sbjct: 122 MVVVVEIIMKRKNKGANKIGVDEVEIVEEEIAQIVQLSSVTIVENMNTTQRIACREEG 179

[Close]

BLAST of MELO.jh030043.1 vs. NCBI nr
Match: TYK11016.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 2.85e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIA 53
          MVVVVEI MKRKNKGANKIGVDE E+VEE +AQIV++SSV IVENMNT QRIA
Sbjct: 1  MVVVVEITMKRKNKGANKIGVDEDEVVEEAIAQIVKMSSVIIVENMNTAQRIA 53

[Close]

BLAST of MELO.jh030043.1 vs. NCBI nr
Match: KAA0054889.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 2.85e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIA 53
          MVVVVEI MKRKNKGANKIGVDE E+VEE +AQIV++SSV IVENMNT QRIA
Sbjct: 1  MVVVVEITMKRKNKGANKIGVDEDEVVEEAIAQIVKMSSVIIVENMNTAQRIA 53

[Close]

BLAST of MELO.jh030043.1 vs. ExPASy TrEMBL
Match: A0A5D3C1S7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00390 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 1.06e-26
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1   MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIACREEG 58
           MVVVVEIIMKRKNKGANKIGVDEVEIVEEE+AQIVQLSSVTIVENMNTTQRIACREEG
Sbjct: 122 MVVVVEIIMKRKNKGANKIGVDEVEIVEEEIAQIVQLSSVTIVENMNTTQRIACREEG 179

[Close]

BLAST of MELO.jh030043.1 vs. ExPASy TrEMBL
Match: A0A5A7UN42 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G00040 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.38e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIA 53
          MVVVVEI MKRKNKGANKIGVDE E+VEE +AQIV++SSV IVENMNT QRIA
Sbjct: 1  MVVVVEITMKRKNKGANKIGVDEDEVVEEAIAQIVKMSSVIIVENMNTAQRIA 53

[Close]

BLAST of MELO.jh030043.1 vs. ExPASy TrEMBL
Match: A0A5D3CKQ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00600 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.38e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MVVVVEIIMKRKNKGANKIGVDEVEIVEEEVAQIVQLSSVTIVENMNTTQRIA 53
          MVVVVEI MKRKNKGANKIGVDE E+VEE +AQIV++SSV IVENMNT QRIA
Sbjct: 1  MVVVVEITMKRKNKGANKIGVDEDEVVEEAIAQIVKMSSVIIVENMNTAQRIA 53

The following BLAST results are available for this feature:

BLAST of MELO.jh030043.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052859.1	2.18e-26	98.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK11016.1	2.85e-16	83.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0054889.1	2.85e-16	83.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of MELO.jh030043.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh030043.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1S7	1.06e-26	98.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UN42	1.38e-16	83.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKQ8	1.38e-16	83.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of MELO.jh030043.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh030043.1.t1	MELO.jh030043.1.t1	mRNA