MELO.jh030001.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030001.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 144918 .. 145514 (-)
RNA-Seq ExpressionMELO.jh030001.1
SyntenyMELO.jh030001.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCTCCTCTTCCCCTATCTCTCTTTTTATGAAGATTTCACCCACCTTAGAGATGTGCATGAGCCAGCTCGCCAAATTCCGAGATGGATTTCTAGCTAATTCTTCTAGCCGTTTCTTGCCCACGCTCACAACCACAGATCGCCGTCAGATATCCATCCAGGAGCCTACCAAACAGAACAAACCAATTGCAATTGATGATCCCAAGCCCAAGGAGGTGATTCTTTCGGAATCCACCATTTTCTTGCTAATTGATCGGTTCATTGTTTGGTGACCCCGCTGTTGATGGCAACACTAACTTAGAGTACTTTTCTAATGTTAAACTCTCGACTTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTGTAAATGCTGTTTTTGTGTGGAATTGATGTTGGATTTCTCTTTTCTCTGCCATTACTAAAATCACACAAATTTGTGTAATAGTAATTGGACATTAATAGTAACACTTTTGAGTACGTATACCAAATCACACAAATTTATATGTAAGAAAACCCTTTTTAAGACCAACTTGTGTAATAGTTTGAAACATTGAGACGAAAAAAAGTCTTTT

mRNA sequence

CTCCTCCTCTTCCCCTATCTCTCTTTTTATGAAGATTTCACCCACCTTAGAGATGTGCATGAGCCAGCTCGCCAAATTCCGAGATGGATTTCTAGCTAATTCTTCTAGCCGTTTCTTGCCCACGCTCACAACCACAGATCGCCGTCAGATATCCATCCAGGAGCCTACCAAACAGAACAAACCAATTGCAATTGATGATCCCAAGCCCAAGGAGGTGATTCTTTCGGAATCCACCATTTTCTTGCTAATTGATCGGTTCATTGTTTGGTGACCCCGCTGTTGATGGCAACACTAACTTAGAGTACTTTTCTAATGTTAAACTCTCGACTTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTGTAAATGCTGTTTTTGTGTGGAATTGATGTTGGATTTCTCTTTTCTCTGCCATTACTAAAATCACACAAATTTGTGTAATAGTAATTGGACATTAATAGTAACACTTTTGAGTACGTATACCAAATCACACAAATTTATATGTAAGAAAACCCTTTTTAAGACCAACTTGTGTAATAGTTTGAAACATTGAGACGAAAAAAAGTCTTTT

Coding sequence (CDS)

ATGAAGATTTCACCCACCTTAGAGATGTGCATGAGCCAGCTCGCCAAATTCCGAGATGGATTTCTAGCTAATTCTTCTAGCCGTTTCTTGCCCACGCTCACAACCACAGATCGCCGTCAGATATCCATCCAGGAGCCTACCAAACAGAACAAACCAATTGCAATTGATGATCCCAAGCCCAAGGAGGTGATTCTTTCGGAATCCACCATTTTCTTGCTAATTGATCGGTTCATTGTTTGGTGA

Protein sequence

MKISPTLEMCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSESTIFLLIDRFIVW
Homology
[Close]
BLAST of MELO.jh030001.1 vs. NCBI nr
Match: KAA0031261.1 (hypothetical protein E6C27_scaffold139G00140 [Cucumis melo var. makuwa] >TYK06713.1 hypothetical protein E5676_scaffold13G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 2.54e-43
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 9  MCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSES 68
          MCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSES
Sbjct: 1  MCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSES 60

Query: 69 TIFLLIDRFIVW 80
          TIFLLIDRFIVW
Sbjct: 61 TIFLLIDRFIVW 72

[Close]
BLAST of MELO.jh030001.1 vs. NCBI nr
Match: KAG6572007.1 (hypothetical protein SDJN03_28735, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 2.65e-20
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0 

Query: 1  MKISPTLEMCMSQLAKFRDGFLANSSSRFLPTL---TTTDRRQISIQEPTKQNKPIAIDD 60
          MKISPT++MC+S+LAKFRD F A SS RF P L   +TTDRR+ SI+E TKQ +  AIDD
Sbjct: 1  MKISPTIDMCISELAKFRDRF-AGSSRRFFPKLRDESTTDRREKSIEEATKQIR--AIDD 60

Query: 61 PKPKEVILSESTIFLLIDR 76
           K  EVILSESTIFLLIDR
Sbjct: 61 RK--EVILSESTIFLLIDR 74

[Close]
BLAST of MELO.jh030001.1 vs. ExPASy TrEMBL
Match: A0A5A7SNR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00140 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.23e-43
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 9  MCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSES 68
          MCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSES
Sbjct: 1  MCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPKPKEVILSES 60

Query: 69 TIFLLIDRFIVW 80
          TIFLLIDRFIVW
Sbjct: 61 TIFLLIDRFIVW 72

[Close]
BLAST of MELO.jh030001.1 vs. ExPASy TrEMBL
Match: A0A0A0K854 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 1.53e-41
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1  MKISPTLEMCMSQLAKFRDGFLANSSSRFLPTLTTTDRRQISIQEPTKQNKPIAIDDPK- 60
          MKISPT+EMCM+QLAKFRD FL+NSSSRFLPT+TTTDRRQISIQ+PTKQNK IAID+P  
Sbjct: 1  MKISPTVEMCMNQLAKFRDVFLSNSSSRFLPTITTTDRRQISIQDPTKQNKAIAIDEPSS 60

Query: 61 PKEVILSESTIFLLIDRFIVW 80
          PKEVILSESTIFLLIDRFIVW
Sbjct: 61 PKEVILSESTIFLLIDRFIVW 81

The following BLAST results are available for this feature:
BLAST of MELO.jh030001.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031261.12.54e-43100.00hypothetical protein E6C27_scaffold139G00140 [Cucumis melo var. makuwa] >TYK0671... [more]
KAG6572007.12.65e-2068.35hypothetical protein SDJN03_28735, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MELO.jh030001.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030001.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SNR81.23e-43100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K8541.53e-4187.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075565 PE=4 SV=1[more]
BLAST of MELO.jh030001.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030001.1.t1MELO.jh030001.1.t1mRNA