MELO.jh024233.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh024233.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr11: 13154289 .. 13154994 (-)
RNA-Seq ExpressionMELO.jh024233.1
SyntenyMELO.jh024233.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGTGTTGGTTATCTTGCAGTTATGGTGCCTCTATAGTTTGAAGTTAGTTTTAGAGAAAATTTTGAGAGATTGTATATTAAGGGGAGTAAGTTTAGGATGTGAGAGGAGAGTTATATGTTTCTAATCAAACATATTAATATTTTCGAGACTTAAACGATGGACAAGGGTTGGATGAAATTTAGGAATAAGTTTTCACTTAAGTATAAGGAGGGAGTGACCCAATTTTTAGAATTTGTCAAGTTTCACGTTGATACCTACGACGACTAAGGTGTCCATGCAAGAGATGTATGAATTTAAATTGGAACTTACTAGAGGGTGTGGAACGATATCTATAGACTATCGCAATATCTTTCTACTACACATAATGAGTGTATCATGGAAAGTCATTAAGCTTTAGAGGTACCGAAAACTTTGAGGAAGGAACTAGTAGTAACCCTTTTGATGAAGGAATTAGTAGTAGCTAGGTAGTTTAATGAAAAAGATGATATGTTTGGTATGCTAAATGATTTACAAGCCCCGATTGAACAGAAAGAGGAAACATAGGAACGTCGTTTGGAAGATGAAATATCAAGGAATATTGGGGTAGGTATAGATGAAGATAGAATTTGTTCTTGACCTCTTTAGAGTGAGTAGACTGGTTGGATAACTGAGGACGCAGGTTGTGCAAGATGGAATTCGCTCCATATCTCTTTAGAGTGAGTAGA

mRNA sequence

GTTGTGTTGGTTATCTTGCAGTTATGACTTAAACGATGGACAAGGGTTGGATGAAATTTAGGAATAAGTTTTCACTTAAGTATAAGGAGGGAGTGACCCAATTTTTAGAATTTGTCAAGTTTCACGTTGATACCTACGACGACTAAGGTGTCCATGCAAGAGATGTATGAATTTAAATTGGAACTTACTAGAGGGTGTGGAACGATATCTATAGACTATCGCAATATCTTTCTACTACACATAATGAGTGTATCATGGAAAGTCATTAAGCTTTAGAGGTACCGAAAACTTTGAGGAAGGAACTAGTAGTAACCCTTTTGATGAAGGAATTAGTAGTAGCTAGGTAGTTTAATGAAAAAGATGATATGTTTGGTATGCTAAATGATTTACAAGCCCCGATTGAACAGAAAGAGGAAACATAGGAACGTCGTTTGGAAGATGAAATATCAAGGAATATTGGGGTAGGTATAGATGAAGATAGAATTTGTTCTTGACCTCTTTAGAGTGAGTAGACTGGTTGGATAACTGAGGACGCAGGTTGTGCAAGATGGAATTCGCTCCATATCTCTTTAGAGTGAGTAGA

Coding sequence (CDS)

ATGCAAGAGATGTATGAATTTAAATTGGAACTTACTAGAGGGTGTGGAACGATATCTATAGACTATCGCAATATCTTTCTACTACACATAATGAGTGTATCATGGAAAGTCATTAAGCTTTAG

Protein sequence

MQEMYEFKLELTRGCGTISIDYRNIFLLHIMSVSWKVIKL
Homology
[Close]
BLAST of MELO.jh024233.1 vs. NCBI nr
Match: KAA0051834.1 (uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK21412.1 uncharacterized protein E5676_scaffold609G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.42e-11
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MQEMYEFKLELTRGCGTISIDYRNIFLLHIMSVSWKVIKL 40
          MQEM+EFKLEL RGCGT S DY NI LLH MSVSW+VIKL
Sbjct: 1  MQEMFEFKLELIRGCGTTSTDYWNILLLHRMSVSWRVIKL 40

[Close]
BLAST of MELO.jh024233.1 vs. NCBI nr
Match: KAA0051873.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21365.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 1.17e-06
Identity = 26/39 (66.67%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 1  MQEMYEFKLELTRGCGTISIDYRNIFLLHIMSVSWKVIK 39
          MQE +EFKLEL RGCGT S D  N  LLH M VSW+VI 
Sbjct: 1  MQETFEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVIS 39

[Close]
BLAST of MELO.jh024233.1 vs. ExPASy TrEMBL
Match: A0A5D3DCW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00610 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.86e-12
Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 1  MQEMYEFKLELTRGCGTISIDYRNIFLLHIMSVSWKVIKL 40
          MQEM+EFKLEL RGCGT S DY NI LLH MSVSW+VIKL
Sbjct: 1  MQEMFEFKLELIRGCGTTSTDYWNILLLHRMSVSWRVIKL 40

[Close]
BLAST of MELO.jh024233.1 vs. ExPASy TrEMBL
Match: A0A5D3DCW2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00030 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.68e-07
Identity = 26/39 (66.67%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 1  MQEMYEFKLELTRGCGTISIDYRNIFLLHIMSVSWKVIK 39
          MQE +EFKLEL RGCGT S D  N  LLH M VSW+VI 
Sbjct: 1  MQETFEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVIS 39

[Close]
BLAST of MELO.jh024233.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ50 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00180 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.65e-04
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 1  MQEMYEFKLELTRGCGTISIDYRNI-----FLLHIMSVSWK 36
          MQEM+EFKLEL RGCGT S DY NI     ++ H  S+S++
Sbjct: 1  MQEMFEFKLELIRGCGTTSADYWNIPYYTEWVYHGESLSYR 41

[Close]
BLAST of MELO.jh024233.1 vs. ExPASy TrEMBL
Match: A0A5A7V2I6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003540 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.71e-04
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 1   MQEMYEFKLELTRGCGTISIDYRNI-----FLLHIMSVSWKVIK 39
           M+EMYE KLELTRGCG IS DY NI     ++ H  S+S++ I+
Sbjct: 111 MREMYELKLELTRGCGMISTDYWNIPYYTEWVYHGESLSFRGIE 154

The following BLAST results are available for this feature:
BLAST of MELO.jh024233.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051834.11.42e-1180.00uncharacterized protein E6C27_scaffold60G002600 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0051873.11.17e-0666.67CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK21365.1 CACTA en-... [more]
BLAST of MELO.jh024233.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh024233.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DCW36.86e-1280.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DCW25.68e-0766.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TZ505.65e-0456.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V2I67.71e-0454.55CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO.jh024233.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh024233.1.t1MELO.jh024233.1.t1mRNA