MELO.jh022813.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh022813.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Gag/pol protein
Location	chr10: 14925279 .. 14925490 (-)
RNA-Seq Expression	MELO.jh022813.1
Synteny	MELO.jh022813.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTTCAAGGAAAATGTGAAATTAGACGGATATTTGAATCTCGCGTGGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGCAGCTAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCGTCGTTTAACGATAGCCG

mRNA sequence

ATGCTCTTTCAAGGAAAATGTGAAATTAGACGGATATTTGAATCTCGCGTGGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGCAGCTAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCGTCGTTTAACGATAGCCG

Coding sequence (CDS)

ATGCTCTTTCAAGGAAAATGTGAAATTAGACGGATATTTGAATCTCGCGTGGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGCAGCTAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCGTCGTTTAACGATAGC

Protein sequence

MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRFAPNRSSFNDS

Homology

[Close]

BLAST of MELO.jh022813.1 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 7.15e-35
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I +SRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISKSRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFND+
Sbjct: 61 TPNHSSFNDN 70

[Close]

BLAST of MELO.jh022813.1 vs. NCBI nr
Match: KAA0039167.1 (uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0052049.1 uncharacterized protein E6C27_scaffold578G00120 [Cucumis melo var. makuwa] >KAA0061151.1 uncharacterized protein E6C27_scaffold753G00180 [Cucumis melo var. makuwa] >TYK05359.1 uncharacterized protein E5676_scaffold83G00280 [Cucumis melo var. makuwa] >TYK12370.1 uncharacterized protein E5676_scaffold302G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 7.15e-35
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I ESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFN++
Sbjct: 61 TPNHSSFNEN 70

[Close]

BLAST of MELO.jh022813.1 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 2.91e-34
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I ESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALI TRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALISTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFND+
Sbjct: 61 TPNHSSFNDN 70

[Close]

BLAST of MELO.jh022813.1 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 3.47e-34
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLFQGKCEIR I ESRV NEA+DSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFQGKCEIRWISESRVENEAKDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFND+
Sbjct: 61 TPNHSSFNDN 70

[Close]

BLAST of MELO.jh022813.1 vs. NCBI nr
Match: KAA0056673.1 (uncharacterized protein E6C27_scaffold288G002080 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 1.61e-33
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I ES VGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESHVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFN++
Sbjct: 61 TPNHSSFNEN 70

[Close]

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL
Match: A0A5D3DUF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001500 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 3.46e-35
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I ESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFN++
Sbjct: 61 TPNHSSFNEN 70

[Close]

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 3.46e-35
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I +SRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISKSRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFND+
Sbjct: 61 TPNHSSFNDN 70

[Close]

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.41e-34
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I ESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALI TRCRF
Sbjct: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALISTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFND+
Sbjct: 61 TPNHSSFNDN 70

[Close]

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.68e-34
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLFQGKCEIR I ESRV NEA+DSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFQGKCEIRWISESRVENEAKDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFND+
Sbjct: 61 TPNHSSFNDN 70

[Close]

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL
Match: A0A5A7UL90 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G002080 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 7.79e-34
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MLFQGKCEIRRIFESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSQLKNALIPTRCRF 60
          MLF+GKCEIR I ES VGNEAEDSEKDEKDNDGRDRDVVYASSSMPS  KNALIPTRCRF
Sbjct: 1  MLFRGKCEIRWISESHVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60

Query: 61 APNRSSFNDS 70
           PN SSFN++
Sbjct: 61 TPNHSSFNEN 70

The following BLAST results are available for this feature:

BLAST of MELO.jh022813.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061741.1	7.15e-35	87.14	uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa]	[more]
KAA0039167.1	7.15e-35	87.14	uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
KAA0054315.1	2.91e-34	87.14	uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12...	[more]
KAA0035440.1	3.47e-34	87.14	uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa]	[more]
KAA0056673.1	1.61e-33	85.71	uncharacterized protein E6C27_scaffold288G002080 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh022813.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUF5	3.46e-35	87.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7N3	3.46e-35	87.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UKV8	1.41e-34	87.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWM4	1.68e-34	87.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UL90	7.79e-34	85.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO.jh022813.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh022813.1.t1	MELO.jh022813.1.t1	mRNA