MELO.jh019887.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh019887.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr09: 3876259 .. 3876573 (+)
RNA-Seq Expression	MELO.jh019887.1
Synteny	MELO.jh019887.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGGATGAGCTGGTCAATCCTAAAATCATTTATAAGGAGCCGGATGATGAAGCCTCCTTTTCAGATAAAGAAGTTTCTGATGCGACTGGCAAGAACCAATCTATTGTGATTTTTAGGTTCGGTCAGGTAGTAGAGGCTAAGGAGAGATGCTTTCCATCAGTCAAAAGTAGATATCGCCCCCCATGCTCCTCATGTCCACTTACCAAGGAATAGGAAGGGAAGAATTGGAACCAGAGCTAGTTGGGGTAAAGAGTCATAAGCGTGGTACGGGTGAGAGAGGATGTGCTCGTACGGTTCACAGAAGGGTATG

mRNA sequence

ATGGAGAGGATGAGCTGGTCAATCCTAAAATCATTTATAAGGAGCCGGATGATGAAGCCTCCTTTTCAGATAAAGAAGTTTCTGATGCGACTGGCAAGAACCAATCTATTGTGATTTTTAGGTTCGGTCAGGTAGTAGAGGCTAAGGAGAGATGCTTTCCATCAGTCAAAAGTAGATATCGCCCCCCATGCTCCTCATGTCCACTTACCAAGGAATAGGAAGGGAAGAATTGGAACCAGAGCTAGTTGGGGTAAAGAGTCATAAGCGTGGTACGGGTGAGAGAGGATGTGCTCGTACGGTTCACAGAAGGGTATG

Coding sequence (CDS)

ATGCTCCTCATGTCCACTTACCAAGGAATAGGAAGGGAAGAATTGGAACCAGAGCTAGTTGGGGTAAAGAGTCATAAGCGTGGTACGGGTGAGAGAGGATGTGCTCGTACGGTTCACAGAAGGGTA

Protein sequence

MLLMSTYQGIGREELEPELVGVKSHKRGTGERGCARTVHRRV

Homology

[Close]

BLAST of MELO.jh019887.1 vs. NCBI nr
Match: TYK09927.1 (hypothetical protein E5676_scaffold16G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 4.28e-06
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1  MLLMSTYQGIGREELEPELVGVKSHKRGTGERGCARTVHRR 41
          ML  S YQGI REELE ELV VKS KRG  ERG ART+ R+
Sbjct: 1  MLQQSAYQGIEREELELELVRVKSRKRGGSERGRARTIQRK 41

[Close]

BLAST of MELO.jh019887.1 vs. ExPASy TrEMBL
Match: A0A5D3CD65 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00510 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.07e-06
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1  MLLMSTYQGIGREELEPELVGVKSHKRGTGERGCARTVHRR 41
          ML  S YQGI REELE ELV VKS KRG  ERG ART+ R+
Sbjct: 1  MLQQSAYQGIEREELELELVRVKSRKRGGSERGRARTIQRK 41

The following BLAST results are available for this feature:

BLAST of MELO.jh019887.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09927.1	4.28e-06	68.29	hypothetical protein E5676_scaffold16G00510 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh019887.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh019887.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CD65	2.07e-06	68.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO.jh019887.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh019887.1.t1	MELO.jh019887.1.t1	mRNA