MELO.jh019644.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh019644.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	60S ribosomal protein L32
Location	chr09: 1254326 .. 1254854 (+)
RNA-Seq Expression	MELO.jh019644.1
Synteny	MELO.jh019644.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTCGAAGTTGGGATGGCCTAAGGAAACCCTAGTATCTATATAAGCGAAAATGGCGGTGCCTTTGCTGTCGAAGAAGATCGTGAATAAGAGGACAAAGAAGTTCAAGAGGCCTCAGAGTGATCGAAAGATCTTCATCAAGGAAAATTGAAGAAGAACCGAGGGTATTGATTCTAGAGTGAGAAGAAAGTTTAAAGGACGCACATTGATGCCAAATATTGGTACAGTACCGACAAGAAGACCTGTCACTACCTGCCTAATGGGATCAAGAAGTTCATTGTTCATAATGTCAAGGAGCTCAAACTGTTGATGATGCACAACAGGATATACTGTGCCGAGATTGCTCATGATGTTTCAATAGAGAATAGGAAAGAGATTCTAGAGAGGGCAGCTCAACTTGATGTTGCAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAAGATGAATGAACAATTTAGGTCCTTAAATGCCAGTTTTCTTCATGCTACAATAAGACTTCGTTATTATATATCCTTTTTTGGTTCA

mRNA sequence

ATTGTCGAAGTTGGGATGGCCTAAGGAAACCCTAGTATCTATATAAGCGAAAATGGCGGTGCCTTTGCTGTCGAAGAAGATCGTGAATAAGAGGACAAAGAAGTTCAAGAGGCCTCAGAGTGATCGAAAGATCTTCATCAAGGAAAATTGAAGAAGAACCGAGGGTATTGATTCTAGAGTGAGAAGAAAGTTTAAAGGACGCACATTGATGCCAAATATTGGTACAGTACCGACAAGAAGACCTGTCACTACCTGCCTAATGGGATCAAGAAGTTCATTGTTCATAATGTCAAGGAGCTCAAACTGTTGATGATGCACAACAGGATATACTGTGCCGAGATTGCTCATGATGTTTCAATAGAGAATAGGAAAGAGATTCTAGAGAGGGCAGCTCAACTTGATGTTGCAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAAGATGAATGAACAATTTAGGTCCTTAAATGCCAGTTTTCTTCATGCTACAATAAGACTTCGTTATTATATATCCTTTTTTGGTTCA

Coding sequence (CDS)

ATGATGCACAACAGGATATACTGTGCCGAGATTGCTCATGATGTTTCAATAGAGAATAGGAAAGAGATTCTAGAGAGGGCAGCTCAACTTGATGTTGCAGTTACCAACAAGCTTGCTAGGTTGCACAGCCAAGAAGATGAATGA

Protein sequence

MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE

Homology

[Close]

BLAST of MELO.jh019644.1 vs. NCBI nr
Match: KAB2021925.1 (hypothetical protein ES319_D07G173500v1 [Gossypium barbadense])

HSP 1 Score: 81.6 bits (200), Expect = 3.61e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
          MMHNR YCAEIAHDVS + RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 1  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQEDE 47

[Close]

BLAST of MELO.jh019644.1 vs. NCBI nr
Match: XP_021600018.1 (60S ribosomal protein L32-1 [Manihot esculenta] >KAG8634628.1 hypothetical protein MANES_17G064800v8 [Manihot esculenta] >OAY25061.1 hypothetical protein MANES_17G064800v8 [Manihot esculenta])

HSP 1 Score: 83.2 bits (204), Expect = 8.31e-19
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
           MMHNRIYCAEIAHDVS   RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 87  MMHNRIYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. NCBI nr
Match: MBA0700629.1 (hypothetical protein [Gossypium aridum] >MBA0739792.1 hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 81.6 bits (200), Expect = 8.49e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
          MMHNR YCAEIAHDVS + RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 35 MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQEDE 81

[Close]

BLAST of MELO.jh019644.1 vs. NCBI nr
Match: MBA0560458.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 81.6 bits (200), Expect = 8.49e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
          MMHNR YCAEIAHDVS + RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 35 MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQEDE 81

[Close]

BLAST of MELO.jh019644.1 vs. NCBI nr
Match: VFQ95944.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 82.8 bits (203), Expect = 1.18e-18
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
           MMHNR YCAEIAHDVS   RKEI+ERAAQLDVAVTNKLARL SQEDE
Sbjct: 87  MMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVAVTNKLARLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy Swiss-Prot
Match: P49211 (60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 4.0e-13
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS + RK I+ERA+QLDV VTN+LARL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy Swiss-Prot
Match: Q9FHG2 (60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH++S + RK I+ERA+QLDV V+NKL RL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy Swiss-Prot
Match: P51421 (60S ribosomal protein L32 (Fragment) OS=Zea mays OX=4577 GN=RPL32 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-09
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 7  YCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
          YCAEIAH+VS + RKEI+ERAAQLD+ V  KLAR  SQEDE
Sbjct: 2  YCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy Swiss-Prot
Match: Q962T1 (60S ribosomal protein L32 OS=Spodoptera frugiperda OX=7108 GN=RpL32 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-09
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MM NR YCAEIAH VS + RK I+ERA QL + VTN  ARL SQE+E
Sbjct: 88  MMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIRVTNSAARLRSQENE 134

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy Swiss-Prot
Match: Q90YT6 (60S ribosomal protein L32 OS=Ictalurus punctatus OX=7998 GN=rpl32 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-09
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           +M N+ YCAEIAH+VS +NRK I+ERAAQL + VTN  ARL S+E+E
Sbjct: 89  LMSNKSYCAEIAHNVSSKNRKVIVERAAQLAIKVTNPNARLRSEENE 135

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy TrEMBL
Match: A0A0A0KXQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644575 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.09e-20
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
           MMHN IYCAEIAHDVSIEN KEILERAAQLDV VTNKLARL+SQ+DE
Sbjct: 56  MMHNSIYCAEIAHDVSIENGKEILERAAQLDVVVTNKLARLYSQDDE 102

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy TrEMBL
Match: A0A5J5QRY2 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G173500v1 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.75e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
          MMHNR YCAEIAHDVS + RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 1  MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQEDE 47

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy TrEMBL
Match: A0A2C9U6K5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G064800 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.02e-19
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
           MMHNRIYCAEIAHDVS   RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 87  MMHNRIYCAEIAHDVSTRKRKEIVERAAQLDVVVTNKLARLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy TrEMBL
Match: A0A7J9BUB1 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_013028 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.11e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
          MMHNR YCAEIAHDVS + RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 35 MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQEDE 81

[Close]

BLAST of MELO.jh019644.1 vs. ExPASy TrEMBL
Match: A0A7J8YNQ9 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_005673 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.11e-19
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 1  MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 47
          MMHNR YCAEIAHDVS + RKEI+ERAAQLDV VTNKLARL SQEDE
Sbjct: 35 MMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNKLARLRSQEDE 81

[Close]

BLAST of MELO.jh019644.1 vs. TAIR 10
Match: AT4G18100.1 (Ribosomal protein L32e )

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-14
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH+VS + RK I+ERA+QLDV VTN+LARL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLARLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. TAIR 10
Match: AT5G46430.1 (Ribosomal protein L32e )

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH++S + RK I+ERA+QLDV V+NKL RL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

[Close]

BLAST of MELO.jh019644.1 vs. TAIR 10
Match: AT5G46430.2 (Ribosomal protein L32e )

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-13
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MMHNRIYCAEIAHDVSIENRKEILERAAQLDVAVTNKLARLHSQEDE 48
           MMHNR YCAEIAH++S + RK I+ERA+QLDV V+NKL RL SQEDE
Sbjct: 87  MMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGRLRSQEDE 133

The following BLAST results are available for this feature:

BLAST of MELO.jh019644.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB2021925.1	3.61e-19	85.11	hypothetical protein ES319_D07G173500v1 [Gossypium barbadense]	[more]
XP_021600018.1	8.31e-19	87.23	60S ribosomal protein L32-1 [Manihot esculenta] >KAG8634628.1 hypothetical prote...	[more]
MBA0700629.1	8.49e-19	85.11	hypothetical protein [Gossypium aridum] >MBA0739792.1 hypothetical protein [Goss...	[more]
MBA0560458.1	8.49e-19	85.11	hypothetical protein [Gossypium lobatum]	[more]
VFQ95944.1	1.18e-18	87.23	unnamed protein product [Cuscuta campestris]	[more]

BLAST of MELO.jh019644.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49211	4.0e-13	76.60	60S ribosomal protein L32-1 OS=Arabidopsis thaliana OX=3702 GN=RPL32A PE=2 SV=2	[more]
Q9FHG2	2.0e-12	72.34	60S ribosomal protein L32-2 OS=Arabidopsis thaliana OX=3702 GN=RPL32B PE=2 SV=1	[more]
P51421	4.6e-09	73.17	60S ribosomal protein L32 (Fragment) OS=Zea mays OX=4577 GN=RPL32 PE=2 SV=1	[more]
Q962T1	4.6e-09	65.96	60S ribosomal protein L32 OS=Spodoptera frugiperda OX=7108 GN=RpL32 PE=2 SV=1	[more]
Q90YT6	7.9e-09	63.83	60S ribosomal protein L32 OS=Ictalurus punctatus OX=7998 GN=rpl32 PE=2 SV=1	[more]

BLAST of MELO.jh019644.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXQ5	3.09e-20	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G644575 PE=3 SV=1	[more]
A0A5J5QRY2	1.75e-19	85.11	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G173500v1 PE...	[more]
A0A2C9U6K5	4.02e-19	87.23	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G064800 PE=3 SV=...	[more]
A0A7J9BUB1	4.11e-19	85.11	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_013028 PE=3 ...	[more]
A0A7J8YNQ9	4.11e-19	85.11	Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_005673 PE=3 SV=1	[more]

BLAST of MELO.jh019644.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18100.1	2.9e-14	76.60	Ribosomal protein L32e	[more]
AT5G46430.1	1.4e-13	72.34	Ribosomal protein L32e	[more]
AT5G46430.2	1.4e-13	72.34	Ribosomal protein L32e	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001515	Ribosomal protein L32e	PFAM	PF01655	Ribosomal_L32e	coord: 1..36 e-value: 2.3E-10 score: 40.8
IPR001515	Ribosomal protein L32e	PANTHER	PTHR23413	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	coord: 1..47
None	No IPR available	PANTHER	PTHR23413:SF4	SUBFAMILY NOT NAMED	coord: 1..47
IPR036351	Ribosomal protein L32e superfamily	SUPERFAMILY	52042	Ribosomal protein L32e	coord: 2..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh019644.1.t1	MELO.jh019644.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome