MELO.jh018799.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh018799.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr08: 23535459 .. 23536028 (-)
RNA-Seq Expression	MELO.jh018799.1
Synteny	MELO.jh018799.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGGACGAGCAAGATGATGTTCTGCTGGCTAGATTGTTGAAGAAAGTTTTTATTTTCAATGTCGCTTTTGCAAAATCAGCTGATCCTGTCATATCAGCTCATTCTTAGGAAAGTTCTTCTAAAGATGTGTTTATTCCTACTCCTGGTCTTCACCATGCGTCTAGTGAAGAACTTGGTCCATCGCGACATTCACCACCGGTTAGATCATCGGTTCCAGATGATGTTACTTCTCCTAATCCGCATTCAAAACTTGCACCTGTTCCTGTTGATGAATTTACTGAGACCGAGGGAAGGATTGATGTTTCTGATGATGAGACCTCTGTTAATGATGAAAATGTTGAACCTACTAACACTGGTACAACCAATGCTGTTGAACCAAATGTTCATAATGATTTTCAACTTGGGACTCAACAATCCCCTAAAATATCTAGGCGAATGGGGAAGAAATTTCAGCAGAACCGACGTAACATTACCACCAAGACTGGAAGGAAGAAGATTCCCTCGAACATTCCATCTGTCCCCATAGATGAAATATCTTTTTACCTTGAAGAAAATGTTCAATGA

mRNA sequence

ATGGATTTGGACGAGCAAGATGATGTTCTGCTGGCTAGATTGTTGAAGAAAGTTTTTATTTTCAATGTCGCTTTTGCAAAATCAGCTGATCCTGTCATATCAGCTCATTCTTAGGAAAGTTCTTCTAAAGATGTGTTTATTCCTACTCCTGGTCTTCACCATGCGTCTAGTGAAGAACTTGATGATGTTACTTCTCCTAATCCGCATTCAAAACTTGCACCTGTTCCTGTTGATGAATTTACTGAGACCGAGGGAAGGATTGATGTTTCTGATGATGAGACCTCTGTTAATGATGAAAATGTTGAACCTACTAACACTGGTACAACCAATGCTGTTGAACCAAATGTTCATAATGATTTTCAACTTGGGACTCAACAATCCCCTAAAATATCTAGGCGAATGGGGAAGAAATTTCAGCAGAACCGACGTAACATTACCACCAAGACTGGAAGGAAGAAGATTCCCTCGAACATTCCATCTGTCCCCATAGATGAAATATCTTTTTACCTTGAAGAAAATGTTCAATGA

Coding sequence (CDS)

ATGTCGCTTTTGCAAAATCAGCTGATCCTGTCATATCAGCTCATTCTTAGGAAAGTTCTTCTAAAGATGTGTTTATTCCTACTCCTGGTCTTCACCATGCGTCTAGTGAAGAACTTGATGATGTTACTTCTCCTAATCCGCATTCAAAACTTGCACCTGTTCCTGTTGATGAATTTACTGAGACCGAGGGAAGGATTGATGTTTCTGATGATGAGACCTCTGTTAATGATGAAAATGTTGAACCTACTAACACTGGTACAACCAATGCTGTTGAACCAAATGTTCATAATGATTTTCAACTTGGGACTCAACAATCCCCTAAAATATCTAGGCGAATGGGGAAGAAATTTCAGCAGAACCGACGTAACATTACCACCAAGACTGGAAGGAAGAAGATTCCCTCGAACATTCCATCTGTCCCCATAG

Protein sequence

MSLLQNQLILSYQLILRKVLLKMCLFLLLVFTMRLVKNLMMLLLLIRIQNLHLFLLMNLLRPREGLMFLMMRPLLMMKMLNLLTLVQPMLLNQMFIMIFNLGLNNPLKYLGEWGRNFSRTDVTLPPRLEGRRFPRTFHLSP

Homology

[Close]

BLAST of MELO.jh018799.1 vs. NCBI nr
Match: TYK14542.1 (uncharacterized protein E5676_scaffold552G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 5.68e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 105 NPLKYLGEWGRNFSRTDVTLPPRLEGRRFPRTFHLSP 141
           NPLKYLG+ GRNF+R DVTLPPRLEGRRF R FHLSP
Sbjct: 178 NPLKYLGQRGRNFNRIDVTLPPRLEGRRFSRIFHLSP 214

[Close]

BLAST of MELO.jh018799.1 vs. NCBI nr
Match: KAA0057675.1 (uncharacterized protein E6C27_scaffold126G00220 [Cucumis melo var. makuwa] >TYK27460.1 uncharacterized protein E5676_scaffold970G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 9.30e-07
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 90  LLNQMFIMIFNLGLNNPLKYLGEWGRNFSRTDVTLPPRLEGRRF 133
           LL +MFIMI N  LN+ L+Y G+  RNFSRTD TLPPRLE RRF
Sbjct: 70  LLLKMFIMILNPRLNHSLRYPGQQERNFSRTDATLPPRLEERRF 113

[Close]

BLAST of MELO.jh018799.1 vs. ExPASy TrEMBL
Match: A0A5D3CSZ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00220 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.75e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 105 NPLKYLGEWGRNFSRTDVTLPPRLEGRRFPRTFHLSP 141
           NPLKYLG+ GRNF+R DVTLPPRLEGRRF R FHLSP
Sbjct: 178 NPLKYLGQRGRNFNRIDVTLPPRLEGRRFSRIFHLSP 214

[Close]

BLAST of MELO.jh018799.1 vs. ExPASy TrEMBL
Match: A0A5D3DW04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00070 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.50e-07
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 90  LLNQMFIMIFNLGLNNPLKYLGEWGRNFSRTDVTLPPRLEGRRF 133
           LL +MFIMI N  LN+ L+Y G+  RNFSRTD TLPPRLE RRF
Sbjct: 70  LLLKMFIMILNPRLNHSLRYPGQQERNFSRTDATLPPRLEERRF 113

The following BLAST results are available for this feature:

BLAST of MELO.jh018799.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14542.1	5.68e-11	83.78	uncharacterized protein E5676_scaffold552G00220 [Cucumis melo var. makuwa]	[more]
KAA0057675.1	9.30e-07	68.18	uncharacterized protein E6C27_scaffold126G00220 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of MELO.jh018799.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh018799.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CSZ0	2.75e-11	83.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DW04	4.50e-07	68.18	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO.jh018799.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh018799.1.t1	MELO.jh018799.1.t1	mRNA