MELO.jh018676.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh018676.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr08: 20463026 .. 20463333 (-)
RNA-Seq Expression	MELO.jh018676.1
Synteny	MELO.jh018676.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAATCAAGGTTTAAACGTGAAATTGGACAAACTGCTTCTAGAGATTGAAGGACCGAAAAATTTGTTGAAAGAGAAGGAAAGTGCAACAGTGGAACCCAATGAAAACATGCAGAGAGATGAGAATGATGAGAATGATAGAGGTCAAGGTGTGAGAAATAATGGTGAAGAAAGTGGAATGGGGGATAAAGGACACCAGGTATTTTACACATATACATATCTATGGTTGTTCTATTCATAACTGTATACTTTACATACTCATTTTATTGATGATCAGGATGGAAAAACTAAAAATGAAAGTGAAGGAAA

mRNA sequence

AACAATCAAGGTTTAAACGTGAAATTGGACAAACTGCTTCTAGAGATTGAAGGACCGAAAAATTTGTTGAAAGAGAAGGAAAGTGCAACAGTGGAACCCAATGAAAACATGCAGAGAGATGAGAATGATGAGAATGATAGAGGTCAAGGTGTGAGAAATAATGGTGAAGAAAGTGGAATGGGGGATAAAGGACACCAGGATGGAAAAACTAAAAATGAAAGTGAAGGAAA

Coding sequence (CDS)

ATGCAGAGAGATGAGAATGATGAGAATGATAGAGGTCAAGGTGTGAGAAATAATGGTGAAGAAAGTGGAATGGGGGATAAAGGACACCAGGATGGAAAAACTAAAAATGAAAGTGAAGGA

Protein sequence

MQRDENDENDRGQGVRNNGEESGMGDKGHQDGKTKNESEG

Homology

[Close]

BLAST of MELO.jh018676.1 vs. NCBI nr
Match: KAA0041214.1 (hypothetical protein E6C27_scaffold128G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.99e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1   MQRDENDENDRGQGVRNNGEESGMGDKGHQ 30
           MQRDENDENDRGQGVRNNGEESGMGDKGHQ
Sbjct: 129 MQRDENDENDRGQGVRNNGEESGMGDKGHQ 158

[Close]

BLAST of MELO.jh018676.1 vs. NCBI nr
Match: TYK27677.1 (uncharacterized protein E5676_scaffold225G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.38e-06
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MQRDENDENDRGQGVRNNGEESGMGDKGHQDGKTKNESEG 40
           +QRDEN+END G+G RNNGEE GM DKG QDGK+ NESEG
Sbjct: 188 IQRDENNENDGGEGHRNNGEEMGMRDKGEQDGKSGNESEG 227

[Close]

BLAST of MELO.jh018676.1 vs. NCBI nr
Match: KAA0055985.1 (uncharacterized protein E6C27_scaffold319G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.53e-06
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MQRDENDENDRGQGVRNNGEESGMGDKGHQDGKTKNESEG 40
           +QRDEN+END G+G RNNGEE GM DKG QDGK+ NESEG
Sbjct: 226 IQRDENNENDGGEGHRNNGEEMGMRDKGEQDGKSGNESEG 265

[Close]

BLAST of MELO.jh018676.1 vs. ExPASy TrEMBL
Match: A0A5A7TCN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001720 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.65e-09
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1   MQRDENDENDRGQGVRNNGEESGMGDKGHQ 30
           MQRDENDENDRGQGVRNNGEESGMGDKGHQ
Sbjct: 129 MQRDENDENDRGQGVRNNGEESGMGDKGHQ 158

[Close]

BLAST of MELO.jh018676.1 vs. ExPASy TrEMBL
Match: A0A5D3DV63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00030 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.70e-07
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MQRDENDENDRGQGVRNNGEESGMGDKGHQDGKTKNESEG 40
           +QRDEN+END G+G RNNGEE GM DKG QDGK+ NESEG
Sbjct: 188 IQRDENNENDGGEGHRNNGEEMGMRDKGEQDGKSGNESEG 227

[Close]

BLAST of MELO.jh018676.1 vs. ExPASy TrEMBL
Match: A0A5A7UQS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001240 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.41e-07
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MQRDENDENDRGQGVRNNGEESGMGDKGHQDGKTKNESEG 40
           +QRDEN+END G+G RNNGEE GM DKG QDGK+ NESEG
Sbjct: 226 IQRDENNENDGGEGHRNNGEEMGMRDKGEQDGKSGNESEG 265

The following BLAST results are available for this feature:

BLAST of MELO.jh018676.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041214.1	1.99e-08	100.00	hypothetical protein E6C27_scaffold128G001720 [Cucumis melo var. makuwa]	[more]
TYK27677.1	1.38e-06	75.00	uncharacterized protein E5676_scaffold225G00030 [Cucumis melo var. makuwa]	[more]
KAA0055985.1	1.53e-06	75.00	uncharacterized protein E6C27_scaffold319G001240 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh018676.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh018676.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCN2	9.65e-09	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DV63	6.70e-07	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQS8	7.41e-07	75.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO.jh018676.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh018676.1.t1	MELO.jh018676.1.t1	mRNA