MELO.jh018019.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh018019.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Regulatory particle non-ATPase 10
Location	chr08: 7993408 .. 7994379 (-)
RNA-Seq Expression	MELO.jh018019.1
Synteny	MELO.jh018019.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGTAGAAAACTAAGGGCGTTAAGAGCGAGAGAGAACGGAGAGCAAGAATTCTGACGGCAATAACGGAGGTTGCTTATACGCTAACGCTGCACGGCCGCACCAACTGATATTTAACGGCGTTATTACCCACGATAACACCGGCGGTTGGATTTCCGAACATGATAGCCGCGGGACAGTCGACGTTGAGATGGTACCGGCCGGAGATGAAGGTACCGACCTTGAATCGGACGCGACCGTCGAGTTTAATGGACAACTGGACTGTACCAACGGCCTGATCTTGATTAAGGGCGGCGCCGTTGTAGGGGGAGATCGGAACGGAGTTACCGACGAGGAAGGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGCCGGTACGGAGAGTGATCTGTTGGTTACGGTAAACGGCGTAGACGTCGAGGCGGTCGTAATAGACTCCGATCTTGTCGTTGGGGTTGCGGGAAGAGACGGTGACTTGAATACTGGAGGAGATGAAGTTAGCAGCGGTGATATTGAAGAGGTAGACGGTGGCGTCTTGGATGACGAATTTGGGCTTTGTAGGTTGAAGAATGGCCCAAATAAGGAGGATTGTGAGGAGGACGAGGAAGAGAAAAATGAGGATTCCGGCGTAGATTCGACGGATTAGCTTTGGGCGTTTCTTGCTGTGGTGAACGCATTCCTTTGACATGTTGGTGAGGGTGAGGGTGAGGGTGTGAGAGAGAAGATGAGTTTTGAAGTCGTTGATGGTTTTCTTTTCCACTATCTCTCTCTCTCTCTCCGATCAGTAGTATTAGAGAATGATGATTGGAAGTGTTATTTATGGATCATAAATTCTAATTTCTATGGTTCATAATCATTTCTATTATATAAAACATTTAATATTCATATTATTATTATTAATAATAAAATAAATATAACATTGGAAAAAATAATTACCGATATAATAAAATTTTATCT

mRNA sequence

AAAAGTAGAAAACTAAGGGCGTTAAGAGCGAGAGAGAACGGAGAGCAAGAATTCTGACGGCAATAACGGAGGTTGCTTATACGCTAACGCTGCACGGCCGCACCAACTGATATTTAACGGCGTTATTACCCACGATAACACCGGCGGTTGGATTTCCGAACATGATAGCCGCGGGACAGTCGACGTTGAGATGGTACCGGCCGGAGATGAAGGTACCGACCTTGAATCGGACGCGACCGTCGAGTTTAATGGACAACTGGACTGTACCAACGGCCTGATCTTGATTAAGGGCGGCGCCGTTGTAGGGGGAGATCGGAACGGAGTTACCGACGAGGAAGGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGCCGGTACGGAGAGTGATCTGTTGGTTACGGTAAACGGCGTAGACGTCGAGGCGGTCGTAATAGACTCCGATCTTGTCGTTGGGGTTGCGGGAAGAGACGGTGACTTGAATACTGGAGGAGATGAAGTTAGCAGCGGTGATATTGAAGAGGTAGACGGTGGCGTCTTGGATGACGAATTTGGGCTTTGTAGGTTGAAGAATGGCCCAAATAAGGAGGATTGTGAGGAGGACGAGGAAGAGAAAAATGAGGATTCCGGCGTAGATTCGACGGATTAGCTTTGGGCGTTTCTTGCTGTGGTGAACGCATTCCTTTGACATGTTGGTGAGGGTGAGGGTGAGGGTGTGAGAGAGAAGATGAGTTTTGAAGTCGTTGATGGTTTTCTTTTCCACTATCTCTCTCTCTCTCTCCGATCAGTAGTATTAGAGAATGATGATTGGAAGTGTTATTTATGGATCATAAATTCTAATTTCTATGGTTCATAATCATTTCTATTATATAAAACATTTAATATTCATATTATTATTATTAATAATAAAATAAATATAACATTGGAAAAAATAATTACCGATATAATAAAATTTTATCT

Coding sequence (CDS)

ATGGTACCGGCCGGAGATGAAGGTACCGACCTTGAATCGGACGCGACCGTCGAGTTTAATGGACAACTGGACTGTACCAACGGCCTGATCTTGATTAAGGGCGGCGCCGTTGTAGGGGGAGATCGGAACGGAGTTACCGACGAGGAAGGGAGACCAGATGTTGAGATCGTTGTGGCCTTGGTAGGTAGGTTGAATGCCGGTACGGAGAGTGATCTGTTGGTTACGGTAAACGGCGTAGACGTCGAGGCGGTCGTAATAGACTCCGATCTTGTCGTTGGGGTTGCGGGAAGAGACGGTGACTTGAATACTGGAGGAGATGAAGTTAGCAGCGGTGATATTGAAGAGGTAGACGGTGGCGTCTTGGATGACGAATTTGGGCTTTGTAGGTTGAAGAATGGCCCAAATAAGGAGGATTGTGAGGAGGACGAGGAAGAGAAAAATGAGGATTCCGGCGTAGATTCGACGGATTAG

Protein sequence

MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVALVGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGVLDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD

Homology

[Close]

BLAST of MELO.jh018019.1 vs. NCBI nr
Match: TYK04331.1 (hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (760), Expect = 3.37e-101
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL
Sbjct: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDL+TGGDEVSSGDIEEVDGGV
Sbjct: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD 156
           LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD
Sbjct: 121 LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD 156

[Close]

BLAST of MELO.jh018019.1 vs. NCBI nr
Match: GER45898.1 (regulatory particle non-ATPase 10 [Striga asiatica])

HSP 1 Score: 129 bits (325), Expect = 2.85e-34
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           +V AGDEG D   DA V+F+G+ D   GL+L +G AVVG D + V  +EG PDVEI+VAL
Sbjct: 70  VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           V   + G  SDLLV V   D EAVV+D D  V V   DGDL  GGD+V  GD+E+ DGGV
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEEK 146
           L+DE G   L++GP+ ED +E++EE+
Sbjct: 190 LEDESGFSGLEDGPHDEDDKEEQEEE 215

[Close]

BLAST of MELO.jh018019.1 vs. NCBI nr
Match: RXH76386.1 (hypothetical protein DVH24_019274 [Malus domestica])

HSP 1 Score: 120 bits (300), Expect = 2.38e-31
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MVP GDEG DL  D  V  + Q +    L+L +   VV  D +    +E RPDV+++VAL
Sbjct: 1   MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           V R +   E DLL TV  VDVE VV+D+DLVV V+G DGDL  GG++V  G +E  DG V
Sbjct: 61  VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEE 144
           L+DE GL  L++GP+ EDC++++E
Sbjct: 121 LEDEAGLGGLEDGPHDEDCDKEDE 144

[Close]

BLAST of MELO.jh018019.1 vs. NCBI nr
Match: GER41841.1 (hypothetical protein STAS_18573 [Striga asiatica])

HSP 1 Score: 117 bits (294), Expect = 2.94e-29
Identity = 73/145 (50.34%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MV AGDEGTD   D   + +G+ D   GL+L +G AVVG D + V  EE  PDVE++VAL
Sbjct: 70  MVAAGDEGTDPPLDPAGDLDGEADGAGGLVLAEGEAVVGCDGDVVAVEERGPDVEVMVAL 129

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           V   + G   DLL  V GV  EAVV+D+D  VGV G       GGD+V  GD+E  DGGV
Sbjct: 130 VDGRDGGGVGDLLAVVGGVGGEAVVVDADSGVGVVGG------GGDDVWGGDVEGEDGGV 189

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEE 145
           L+DE GL  L++GP+ ED E+++EE
Sbjct: 190 LEDESGLVGLEDGPDYEDEEDEDEE 208

[Close]

BLAST of MELO.jh018019.1 vs. NCBI nr
Match: KZM99200.1 (hypothetical protein DCAR_013438 [Daucus carota subsp. sativus])

HSP 1 Score: 117 bits (294), Expect = 3.01e-29
Identity = 73/157 (46.50%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           M+P   EG++  S  ++  + Q     GL+L +   VV   R+     + RPDV + VAL
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSG-DIEEVDGG 120
           VG  + G  SDLL  V G DVE VV+DSD  VGV+G DGDL  GG+EV  G D+E VDGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD 156
           VL+ E GL  L+NGP+ E+ EE +EE +E+ G D+ D
Sbjct: 176 VLEGEAGLFGLENGPDDEEGEEADEEDDEEDGADAAD 212

[Close]

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL
Match: A0A5D3BXB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21333G00010 PE=4 SV=1)

HSP 1 Score: 297 bits (760), Expect = 1.63e-101
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL
Sbjct: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDL+TGGDEVSSGDIEEVDGGV
Sbjct: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLDTGGDEVSSGDIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD 156
           LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD
Sbjct: 121 LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD 156

[Close]

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL
Match: A0A0A0KKM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 254 bits (650), Expect = 9.60e-85
Identity = 138/156 (88.46%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MV AGDEGTD ESDA VEFNGQLD TNGLILIKGGAVVG D N VTDEEGRPDV+IVVAL
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           VG LNAGTESDLLV VNGVDVEAVVIDSDLVV V G DGDL+TGGDEVS G+IEEVDGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEEKNEDSGVDSTD 156
           LDDEFGLC LKNGPNKEDCEEDEEEKNEDSGVDS D
Sbjct: 121 LDDEFGLCGLKNGPNKEDCEEDEEEKNEDSGVDSAD 156

[Close]

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL
Match: A0A5A7QLV4 (Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 1.38e-34
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           +V AGDEG D   DA V+F+G+ D   GL+L +G AVVG D + V  +EG PDVEI+VAL
Sbjct: 70  VVSAGDEGADPPLDAAVDFDGEADGAGGLVLGEGDAVVGCDGDVVGVDEGGPDVEILVAL 129

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           V   + G  SDLLV V   D EAVV+D D  V V   DGDL  GGD+V  GD+E+ DGGV
Sbjct: 130 VHGGDGGGVSDLLVVVVRADGEAVVVDPDAGVRVVRGDGDLECGGDDVRGGDVEDEDGGV 189

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEEK 146
           L+DE G   L++GP+ ED +E++EE+
Sbjct: 190 LEDESGFSGLEDGPHDEDDKEEQEEE 215

[Close]

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL
Match: A0A498HYB9 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 1.15e-31
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MVP GDEG DL  D  V  + Q +    L+L +   VV  D +    +E RPDV+++VAL
Sbjct: 1   MVPTGDEGADLPPDPAVHLDEQKNRPGILVLPQSDGVVRSDGDVGAVDERRPDVDVLVAL 60

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           V R +   E DLL TV  VDVE VV+D+DLVV V+G DGDL  GG++V  G +E  DG V
Sbjct: 61  VYRRDERRERDLLRTVGRVDVEPVVVDADLVVRVSGGDGDLEAGGEDVGGGGVEVEDGDV 120

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEE 144
           L+DE GL  L++GP+ EDC++++E
Sbjct: 121 LEDEAGLGGLEDGPHDEDCDKEDE 144

[Close]

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL
Match: A0A5A7QCZ2 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_18573 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 1.42e-29
Identity = 73/145 (50.34%), Postives = 93/145 (64.14%), Query Frame = 0


Query: 1   MVPAGDEGTDLESDATVEFNGQLDCTNGLILIKGGAVVGGDRNGVTDEEGRPDVEIVVAL 60
           MV AGDEGTD   D   + +G+ D   GL+L +G AVVG D + V  EE  PDVE++VAL
Sbjct: 70  MVAAGDEGTDPPLDPAGDLDGEADGAGGLVLAEGEAVVGCDGDVVAVEERGPDVEVMVAL 129

Query: 61  VGRLNAGTESDLLVTVNGVDVEAVVIDSDLVVGVAGRDGDLNTGGDEVSSGDIEEVDGGV 120
           V   + G   DLL  V GV  EAVV+D+D  VGV G       GGD+V  GD+E  DGGV
Sbjct: 130 VDGRDGGGVGDLLAVVGGVGGEAVVVDADSGVGVVGG------GGDDVWGGDVEGEDGGV 189

Query: 121 LDDEFGLCRLKNGPNKEDCEEDEEE 145
           L+DE GL  L++GP+ ED E+++EE
Sbjct: 190 LEDESGLVGLEDGPDYEDEEDEDEE 208

The following BLAST results are available for this feature:

BLAST of MELO.jh018019.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04331.1	3.37e-101	99.36	hypothetical protein E5676_scaffold21333G00010 [Cucumis melo var. makuwa]	[more]
GER45898.1	2.85e-34	52.74	regulatory particle non-ATPase 10 [Striga asiatica]	[more]
RXH76386.1	2.38e-31	48.61	hypothetical protein DVH24_019274 [Malus domestica]	[more]
GER41841.1	2.94e-29	50.34	hypothetical protein STAS_18573 [Striga asiatica]	[more]
KZM99200.1	3.01e-29	46.50	hypothetical protein DCAR_013438 [Daucus carota subsp. sativus]	[more]

BLAST of MELO.jh018019.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXB8	1.63e-101	99.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KKM0	9.60e-85	88.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454480 PE=4 SV=1	[more]
A0A5A7QLV4	1.38e-34	52.74	Regulatory particle non-ATPase 10 OS=Striga asiatica OX=4170 GN=STAS_22889 PE=4 ...	[more]
A0A498HYB9	1.15e-31	48.61	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_019274 PE=4 SV=1	[more]
A0A5A7QCZ2	1.42e-29	50.34	Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_18573 PE=4 SV=1	[more]

BLAST of MELO.jh018019.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh018019.1.t1	MELO.jh018019.1.t1	mRNA