MELO.jh015076.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh015076.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr07: 3442209 .. 3442915 (-)
RNA-Seq ExpressionMELO.jh015076.1
SyntenyMELO.jh015076.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATAGAAGTTTCGATTCAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGCCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTTTTTTACAATTTACATAGATCGAACAACGTAAGACTTCGTGATGTAGCAGATGATCCGCAACAAGTCCTTGATTTATTTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGATGAACTCGATGAAGTTTACCATAATGTGGAAGAAATGCCTCATACGACACAAACATAGAGCCAAACTGGTTATGGTAGTCCGATGAAGATGATGTCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAAGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGA

mRNA sequence

ATGACAATAGAAGTTTCGATTCAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGCCATCTGATCGAACAACGTAAGACTTCGTGATGTAGCAGATGATCCGCAACAAGTCCTTGATTTATTTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGATGAACTCGATGAAGTTTACCATAATGTGGAAGAAATGCCTCATACGACACAAACATAGAGCCAAACTGGTTATGGTAGTCCGATGAAGATGATGTCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAAGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGA

Coding sequence (CDS)

ATGATGCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTC

Protein sequence

MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDV
Homology
[Close]
BLAST of MELO.jh015076.1 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 5.03e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1   MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN 60
           MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN
Sbjct: 114 MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN 173

Query: 61  NIEFRVDV 68
           NIEFRVDV
Sbjct: 174 NIEFRVDV 181

[Close]
BLAST of MELO.jh015076.1 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 6.86e-33
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 2   MQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENN 61
           M  S+HRLHTWMSVH +LTCMD DVAMGNI NICIMKHLQMYQIDKSTNKNQRTKRTENN
Sbjct: 138 MMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENN 197

Query: 62  IEFRVDV 68
           IE RVDV
Sbjct: 198 IELRVDV 204

[Close]
BLAST of MELO.jh015076.1 vs. NCBI nr
Match: KAA0065673.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 9.32e-31
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 3   QGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNI 62
           +GS+H LHTWMSVH +LTCMDMDV MGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN+I
Sbjct: 83  EGSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 142

[Close]
BLAST of MELO.jh015076.1 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 1.04e-30
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 3   QGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNI 62
           +GS+H LHTWMSVH +LTCMDMDV MGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN+I
Sbjct: 87  EGSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

[Close]
BLAST of MELO.jh015076.1 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 8.22e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 27  AMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDV 68
           A+GNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRV+V
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNV 393

[Close]
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 2.43e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1   MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN 60
           MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN
Sbjct: 114 MMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN 173

Query: 61  NIEFRVDV 68
           NIEFRVDV
Sbjct: 174 NIEFRVDV 181

[Close]
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 3.32e-33
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 2   MQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENN 61
           M  S+HRLHTWMSVH +LTCMD DVAMGNI NICIMKHLQMYQIDKSTNKNQRTKRTENN
Sbjct: 138 MMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENN 197

Query: 62  IEFRVDV 68
           IE RVDV
Sbjct: 198 IELRVDV 204

[Close]
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match: A0A5A7VBU8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G001370 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 4.51e-31
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 3   QGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNI 62
           +GS+H LHTWMSVH +LTCMDMDV MGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN+I
Sbjct: 83  EGSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 142

[Close]
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 5.06e-31
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 0 

Query: 3   QGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNI 62
           +GS+H LHTWMSVH +LTCMDMDV MGNITNICIMKHLQMYQIDKSTNKNQRTKRTEN+I
Sbjct: 87  EGSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

[Close]
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.98e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 0 

Query: 27  AMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDV 68
           A+GNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRV+V
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNV 393

The following BLAST results are available for this feature:
BLAST of MELO.jh015076.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066693.15.03e-40100.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0040602.16.86e-3388.06mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0065673.19.32e-3188.33GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK08229.11.04e-3088.33GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0041168.18.22e-1795.24serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
BLAST of MELO.jh015076.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VF642.43e-40100.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3C2V93.32e-3388.06Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7VBU84.51e-3188.33GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3CD185.06e-3188.33GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TDY53.98e-1795.24Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
BLAST of MELO.jh015076.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh015076.1.t1MELO.jh015076.1.t1mRNA