MELO.jh013165.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh013165.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr06: 12324311 .. 12324656 (+)
RNA-Seq ExpressionMELO.jh013165.1
SyntenyMELO.jh013165.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAGAGGAAAAATCCAAAGGTTGAAGAAGGAACAAAAGTGTGAAACGAAACAACTCACCGATACTTTGGGTGGTGCAAACCGATTAAAAAAGGAAGGGCGTGCAAACGGTGGAAAAGTGACGGAAGAGAAATCGATGGAGGAAAAGTGTCGAAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTAGAAAAGCGACGGTGGAAATGCGCCGGAAAGCCTTTAAAAAACGGAAGAACAAATACGCCGGAAAGTTTTACAGAAAGTTTTACAGAAGATGGTTTATTTTTTTGGGAGGAAAATTAGAAAATTGAAGGGAATGCATAACATGTATTAA

mRNA sequence

AAAACAGAGGAAAAATCCAAAGGTTGAAGAAGGAACAAAAGTGTGAAACGAAACAACTCACCGATACTTTGGGTGGTGCAAACCGATTAAAAAAGGAAGGGCGTGCAAACGGTGGAAAAGTGACGGAAGAGAAATCGATGGAGGAAAAGTGTCGAAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTAGAAAAGCGACGGTGGAAATGCGCCGGAAAGCCTTTAAAAAACGGAAGAACAAATACGCCGGAAAGTTTTACAGAAAGTTTTACAGAAGATGGTTTATTTTTTTGGGAGGAAAATTAGAAAATTGAAGGGAATGCATAACATGTATTAA

Coding sequence (CDS)

ATGGAGGAAAAGTGTCGAAAGAGAAAGCGACGGTGGAAAAACGGAAGAGAAAGCTACGGTAGAAAAGCGACGGTGGAAATGCGCCGGAAAGCCTTTAAAAAACGGAAGAACAAATACGCCGGAAAGTTTTACAGAAAGTTTTACAGAAGATGGTTTATTTTTTTGGGAGGAAAATTAGAAAATTGA

Protein sequence

MEEKCRKRKRRWKNGRESYGRKATVEMRRKAFKKRKNKYAGKFYRKFYRRWFIFLGGKLEN
Homology
BLAST of MELO.jh013165.1 vs. NCBI nr
Match: TYK07333.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 2.21e-08
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 6  RKRKRRWKNGRESYGRKATVEMRRKAFKKRKNKYAGK 42
          RKRKRRWKNG+ESYG KATVEMR+KAFKKRKNK  GK
Sbjct: 11 RKRKRRWKNGKESYGGKATVEMRQKAFKKRKNKCTGK 47

BLAST of MELO.jh013165.1 vs. NCBI nr
Match: KAA0025432.1 (uncharacterized protein E6C27_scaffold417G00170 [Cucumis melo var. makuwa] >TYK04751.1 uncharacterized protein E5676_scaffold68G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.31e-07
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 1  MEEKCRKRKRRWKNGRESYGRKATVEMR----RKAFKKRKNKYAGKFYRKFYRRWFIFLG 60
          M EK RKRKRRWKNGRESYG KA  E R    R+  K+R  + +G      YRRWFIFLG
Sbjct: 1  MVEKRRKRKRRWKNGRESYGGKAMEEKRMVKKRRKRKRRWKRDSGNVLESLYRRWFIFLG 60

BLAST of MELO.jh013165.1 vs. ExPASy TrEMBL
Match: A0A5D3C603 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00490 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.07e-08
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 6  RKRKRRWKNGRESYGRKATVEMRRKAFKKRKNKYAGK 42
          RKRKRRWKNG+ESYG KATVEMR+KAFKKRKNK  GK
Sbjct: 11 RKRKRRWKNGKESYGGKATVEMRQKAFKKRKNKCTGK 47

BLAST of MELO.jh013165.1 vs. ExPASy TrEMBL
Match: A0A5A7SJS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00530 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.33e-08
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 1  MEEKCRKRKRRWKNGRESYGRKATVEMR----RKAFKKRKNKYAGKFYRKFYRRWFIFLG 60
          M EK RKRKRRWKNGRESYG KA  E R    R+  K+R  + +G      YRRWFIFLG
Sbjct: 1  MVEKRRKRKRRWKNGRESYGGKAMEEKRMVKKRRKRKRRWKRDSGNVLESLYRRWFIFLG 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07333.12.21e-0886.49putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0025432.11.31e-0756.92uncharacterized protein E6C27_scaffold417G00170 [Cucumis melo var. makuwa] >TYK0... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C6031.07e-0886.49Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SJS06.33e-0856.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh013165.1.t1MELO.jh013165.1.t1mRNA