MELO.jh006733.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh006733.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr03: 28734708 .. 28736571 (-)
RNA-Seq ExpressionMELO.jh006733.1
SyntenyMELO.jh006733.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCCAAGCTTTTTTGTGTCTGTTCCTTTGCACTTGGCTCTTCGGGAGCTGGAGAATCAGCTTGCTCATCAGCCGTTGATTCTTTTACCTCAAAGCTTGTCCTTGGACTTGTTGTAGGACTTGCTACTTCTTGGCTAGATTTCTCCTCCTTCCTTAGTTGCTCTTGTTCTGTCCTCCATATTCTCAACTCTTGTTCTGCTGCGAACTTTCCTTCCTCGGCCTCGCTTTCCTTATCTGTTGCAGCTTTCAGCACTTCCTGTCTGGCCGCTAGTTCACGACTAACTTCCTCAAGCATTTCCTGACATTTTGCTTCGGATTCCTTAGCGGCCTCGATTTGTGAAATTGCTTCTGTCACCTTGATTCTGGCCTGCTCCTCGGCCTCACGGGCATGTTCGCTGAGTTCATTGTATTCCTCTAGTGAAATAGTTACTGTGGTTGGTGAATCTTCTTTTGTGGTTTCAGATGAATCACTACTTTCTTGTAGTGCTTGGATTGCTGATAATGCTAACATTTTTGAAGCATTTGAAGCTTCAATCTCCTTCTGAGCTGCAAGTAATCTACTTTCAACTGCTTTTGATTCTGCCTTTGCTTGTTCTGCTTCTATCTTTATCTTCTGGAGTTCTTCACGAGCCATCTGAGCAATCGACTTAGCCTTATCAACCTCCTCTTCTGCTTGCTTCAATTGATTAGTCAAGTCTACACTATTTTCTTCAGCTTCTTTTACGTTTCCTTGAACAACTATTTCGGACATGTTCTTATCTAATTCAACTTCCCTTTTCTTAGTGGTGGTCAAAGTAAATTTCTCCACTTCAAGCTCTGATTTTAGTGAAGTAGCAGCCATCTTCAAGCATTCTACCTCAGCAATTGCTTTCTCTATGTTGAGCTTTACTTCTTCCAATTCCATCTTCTTTGAATCTACCGCCGAAAGTGTAGCTGCATCTATTTTCTTAACAATTTCAGAAACATCACCTTCCAAGACATGTTCATCACTTATCTCCTCCCTCATTACCGATTCCATATAGGCCATCATTTCGGCTTTCAGATCCGATAACAAACTCGAGGCAGTATCTACTTTCAATTTAAGATCTTCAATCGACAGAACTTGCAAATTTAGTCTACAGAACTCCTCTTCTGCATCATCAAGCTCCTTCCGCCATTTCAAACAATCCTGCTCTTTCGCCATGGCAGCACTCATCCTTTGTTCTTCTGCTTCTAAATGGGAAGCTTGTGCAGACTGCAATGATTGCTTTAAAGCAACCAGCTCCATTGACAGCTCCTCAAGTGCCTTCGCACCTTCCACAGACGCAGCAAGAGCATCGTCAGCATTTTTTACAGCAGCATCTCTCTCGCACACTAACAAAGCAAACTCATTACGTAGTATTTCCAGTTCTTCTTTAATAGATTTCAGCTCTGAAACAGCAGCAGCATGCCCGGCCATGGCCATCTCAAGCTGTGCCTTAGCAAGAGCATCATCATTCTCCTCAGTCGTTCCTTGCTCCATTTCCTCTAGTCTTAGCTTAGCAAGTTCTGAATCTTGTTTTGCCTGTTGCTCTTCTGTTTGAGCAACCTCCAATGCATGCTTTAGTTCTTCTATGCGTTTTTTTGTGTTTTCGAGCTCCTTCAACACTTGGAATTCTTCCACCACAGCTTGGTCCGACTTTTTCCTAAAATGAAGAATATCATCCTGCACACCCTCAAGTCTTTCATCCACTGTCTTACTTCTCTGTAGCAGCAGAAAACAGAATAACCTATCAATCACCTTAGAACTATTGAAAGATTTTTATATCAAGAAAAAAGCCTAAATTATATGCAATGTGATAGTCAGTCAACAACCAACAAGAAAAAATTCAATTATCTTTCCTCA

mRNA sequence

TACCCAAGCTTTTTTGTGTCTGTTCCTTTGCACTTGGCTCTTCGGGAGCTGGAGAATCAGCTTGCTCATCAGCCGTTGATTCTTTTACCTCAAAGCTTGTCCTTGGACTTGTTGTAGGACTTGCTACTTCTTGGCTAGATTTCTCCTCCTTCCTTAGTTGCTCTTGTTCTGTCCTCCATATTCTCAACTCTTGTTCTGCTGCGAACTTTCCTTCCTCGGCCTCGCTTTCCTTATCTGTTGCAGCTTTCAGCACTTCCTGTCTGGCCGCTAGTTCACGACTAACTTCCTCAAGCATTTCCTGACATTTTGCTTCGGATTCCTTAGCGGCCTCGATTTGTGAAATTGCTTCTGTCACCTTGATTCTGGCCTGCTCCTCGGCCTCACGGGCATGTTCGCTGAGTTCATTGTATTCCTCTAGTGAAATAGTTACTGTGGTTGGTGAATCTTCTTTTGTGGTTTCAGATGAATCACTACTTTCTTGTAGTGCTTGGATTGCTGATAATGCTAACATTTTTGAAGCATTTGAAGCTTCAATCTCCTTCTGAGCTGCAAGTAATCTACTTTCAACTGCTTTTGATTCTGCCTTTGCTTGTTCTGCTTCTATCTTTATCTTCTGGAGTTCTTCACGAGCCATCTGAGCAATCGACTTAGCCTTATCAACCTCCTCTTCTGCTTGCTTCAATTGATTAGTCAAGTCTACACTATTTTCTTCAGCTTCTTTTACGTTTCCTTGAACAACTATTTCGGACATGTTCTTATCTAATTCAACTTCCCTTTTCTTAGTGGTGGTCAAAGTAAATTTCTCCACTTCAAGCTCTGATTTTAGTGAAGTAGCAGCCATCTTCAAGCATTCTACCTCAGCAATTGCTTTCTCTATGTTGAGCTTTACTTCTTCCAATTCCATCTTCTTTGAATCTACCGCCGAAAGTGTAGCTGCATCTATTTTCTTAACAATTTCAGAAACATCACCTTCCAAGACATGTTCATCACTTATCTCCTCCCTCATTACCGATTCCATATAGGCCATCATTTCGGCTTTCAGATCCGATAACAAACTCGAGGCAGTATCTACTTTCAATTTAAGATCTTCAATCGACAGAACTTGCAAATTTAGTCTACAGAACTCCTCTTCTGCATCATCAAGCTCCTTCCGCCATTTCAAACAATCCTGCTCTTTCGCCATGGCAGCACTCATCCTTTGTTCTTCTGCTTCTAAATGGGAAGCTTGTGCAGACTGCAATGATTGCTTTAAAGCAACCAGCTCCATTGACAGCTCCTCAAGTGCCTTCGCACCTTCCACAGACGCAGCAAGAGCATCGTCAGCATTTTTTACAGCAGCATCTCTCTCGCACACTAACAAAGCAAACTCATTACGTAGTATTTCCAGTTCTTCTTTAATAGATTTCAGCTCTGAAACAGCAGCAGCATGCCCGGCCATGGCCATCTCAAGCTGTGCCTTAGCAAGAGCATCATCATTCTCCTCAGTCGTTCCTTGCTCCATTTCCTCTAGTCTTAGCTTAGCAAGTTCTGAATCTTGTTTTGCCTGTTGCTCTTCTGTTTGAGCAACCTCCAATGCATGCTTTAGTTCTTCTATGCGTTTTTTTGTGTTTTCGAGCTCCTTCAACACTTGGAATTCTTCCACCACAGCTTGGTCCGACTTTTTCCTAAAATGAAGAATATCATCCTGCACACCCTCAAGTCTTTCATCCACTGTCTTACTTCTCTGTAGCAGCAGAAAACAGAATAACCTATCAATCACCTTAGAACTATTGAAAGATTTTTATATCAAGAAAAAAGCCTAAATTATATGCAATGTGATAGTCAGTCAACAACCAACAAGAAAAAATTCAATTATCTTTCCTCA

Coding sequence (CDS)

ATGGCAGCACTCATCCTTTGTTCTTCTGCTTCTAAATGGGAAGCTTGTGCAGACTGCAATGATTGCTTTAAAGCAACCAGCTCCATTGACAGCTCCTCAAGTGCCTTCGCACCTTCCACAGACGCAGCAAGAGCATCGTCAGCATTTTTTACAGCAGCATCTCTCTCGCACACTAACAAAGCAAACTCATTACGTAGTATTTCCAGTTCTTCTTTAATAGATTTCAGCTCTGAAACAGCAGCAGCATGCCCGGCCATGGCCATCTCAAGCTGTGCCTTAGCAAGAGCATCATCATTCTCCTCAGTCGTTCCTTGCTCCATTTCCTCTAGTCTTAGCTTAGCAAGTTCTGAATCTTGTTTTGCCTGTTGCTCTTCTGTTTGA

Protein sequence

MAALILCSSASKWEACADCNDCFKATSSIDSSSSAFAPSTDAARASSAFFTAASLSHTNKANSLRSISSSSLIDFSSETAAACPAMAISSCALARASSFSSVVPCSISSSLSLASSESCFACCSSV
Homology
[Close]
BLAST of MELO.jh006733.1 vs. NCBI nr
Match: BAT82663.1 (hypothetical protein VIGAN_03270900 [Vigna angularis var. angularis])

HSP 1 Score: 71.2 bits (173), Expect = 5.75e-13
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 0 

Query: 5   ILCSSASKWEACADCNDCFKATSSIDSSSSAFAPSTDAARASSAFFTAASLSHTNKANSL 64
           ILCSSAS   ACA  +  F A SS+  SS  F+   D A ASS F TA+S S T +A S 
Sbjct: 5   ILCSSASMCAACALSSASFVAISSMVKSSIVFSTCFDEAIASSDFLTASSFSTTKEAYSP 64

Query: 65  RSISSSSLIDFSSETAAACPAMAISSCALARASSFSSVVPCSISSSLSLASSESCFA 121
           R+ S+SS ID +S TA    A+A SSCA A A+  SS +PCSISS+LS ASSESC A
Sbjct: 65  RNESNSSFIDVNSMTADEYLALATSSCAFA-ATLESSAMPCSISSTLSFASSESCLA 120

[Close]
BLAST of MELO.jh006733.1 vs. ExPASy TrEMBL
Match: A0A0S3RPX2 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G270900 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.78e-13
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 0 

Query: 5   ILCSSASKWEACADCNDCFKATSSIDSSSSAFAPSTDAARASSAFFTAASLSHTNKANSL 64
           ILCSSAS   ACA  +  F A SS+  SS  F+   D A ASS F TA+S S T +A S 
Sbjct: 5   ILCSSASMCAACALSSASFVAISSMVKSSIVFSTCFDEAIASSDFLTASSFSTTKEAYSP 64

Query: 65  RSISSSSLIDFSSETAAACPAMAISSCALARASSFSSVVPCSISSSLSLASSESCFA 121
           R+ S+SS ID +S TA    A+A SSCA A A+  SS +PCSISS+LS ASSESC A
Sbjct: 65  RNESNSSFIDVNSMTADEYLALATSSCAFA-ATLESSAMPCSISSTLSFASSESCLA 120

The following BLAST results are available for this feature:
BLAST of MELO.jh006733.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BAT82663.15.75e-1354.70hypothetical protein VIGAN_03270900 [Vigna angularis var. angularis][more]
BLAST of MELO.jh006733.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh006733.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0S3RPX22.78e-1354.70Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G... [more]
BLAST of MELO.jh006733.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh006733.1.t1MELO.jh006733.1.t1mRNA