MELO.jh003386.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh003386.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotrans_gag domain-containing protein
Locationchr02: 6662446 .. 6663279 (+)
RNA-Seq ExpressionMELO.jh003386.1
SyntenyMELO.jh003386.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAGAGACTACGTGCTCCAAACAATAGAACATTAAAAGAAAGCATTTTGAATGAAGCGTATAACTTTACTTATGAAATGCACCCTGGAAGAAAGAAAGCGAGAGGTGAGATATGGTGGGATAAAGAAAGGAACAATATCTACAACTGAATATGGCGGGATAAAGAAAGGAACAATATCTAAGAAGAAAGAAAAGAGAGGTTAATGCAATTGGTTTTCCTAATTCAGGAAAGCACAAATCGATTTTTGGCTAGAGAAAACATAAGCAAAACGTTTCGTCACATATAAGCAATGTTTCTCATATGCCTTATAATAGCTATGTACCAACCTATACCTTCTTTGAAACTCCAAAACCTGTTAACTCAAATTCTCCTCGACCATTTGTACAGGGTCAAGGTAGCAAGACCAATTCAGATACATTGCGATTTGATCTAATTCTCATGACTTATACATAACTTTTACCTCAGCTAATTCAAAATCAACAGTTATACAACCTCCTTATACAAAATGGTATGGTTTAGCTTTTAAAAGAAAGGTGCAATCTCTAATTAATGTTGTATGGTTAAGTTTTAAAAAAGCTTATGAGAAGCCGAATGTCAATGAAAATCCACTACCTAATCATGAAAATCCAAAAGTGAATGCTTTGGATGGCCTTGTTGAAAAGTGCAAAAATGAAATTCATTAGATAATGATGCCTATGGAAACACTTTTTGAAGGTCTTTTTGAAGATGGATATCTTAGTCATGAATATTTAGACCCTAACATAAAATATGAAGGGTATGATGAAAGCAGGCATTGTATATTCTATCAAGGAGTTGTAGGTTATGTTGTCTAA

mRNA sequence

TGAAGAGACTACGTGCTCCAAACAATAGAACATTAAAAGAAAGCATTTTGAATGAAGCGTATAACTTTACTTATGAAATGCACCCTGGAAGAAAGAAAGCGAGAGGTGAGATATGGTGGGATAAAGAAAGGAACAATATCTACAACTGAATATGGCGGGATAAAGAAAGGAACAATATCTAAGAAGAAAGAAAAGAGAGGTTAATGCAATTGGTTTTCCTAATTCAGGAAAGCACAAATCGATTTTTGGCTAGAGAAAACATAAGCAAAACGTTTCGTCACATATAAGCAATGTTTCTCATATGCCTTATAATAGCTATGTACCAACCTATACCTTCTTTGAAACTCCAAAACCTGTTAACTCAAATTCTCCTCGACCATTTGTACAGGGTCAAGGTAGCAAGACCAATTCAGATACATTGCGATTTGATCTAATTCTCATGACTTATACATAACTTTTACCTCAGCTAATTCAAAATCAACAGTTATACAACCTCCTTATACAAAATGGTATGGTTTAGCTTTTAAAAGAAAGGTGCAATCTCTAATTAATGTTGTATGGTTAAGTTTTAAAAAAGCTTATGAGAAGCCGAATGTCAATGAAAATCCACTACCTAATCATGAAAATCCAAAAGTGAATGCTTTGGATGGCCTTGTTGAAAAGTGCAAAAATGAAATTCATTAGATAATGATGCCTATGGAAACACTTTTTGAAGGTCTTTTTGAAGATGGATATCTTAGTCATGAATATTTAGACCCTAACATAAAATATGAAGGGTATGATGAAAGCAGGCATTGTATATTCTATCAAGGAGTTGTAGGTTATGTTGTCTAA

Coding sequence (CDS)

ATGCCTTATAATAGCTATGTACCAACCTATACCTTCTTTGAAACTCCAAAACCTGTTAACTCAAATTCTCCTCGACCATTTGTACAGGGTCAAGGTAGCAAGACCAATTCAGATACATTGCGATTTGATCTAATTCTCATGACTTATACATAA

Protein sequence

MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT
Homology
[Close]
BLAST of MELO.jh003386.1 vs. NCBI nr
Match: KAA0066096.1 (uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 8.42e-19
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 114 IPYNSYVPAHTISETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 163

[Close]
BLAST of MELO.jh003386.1 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.15e-18
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 3   YNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           YNSYVPT+T  ETPKPVNSNSPRPFVQGQGSKT+SDT RFDLI MTYT
Sbjct: 103 YNSYVPTHTVSETPKPVNSNSPRPFVQGQGSKTSSDTWRFDLIPMTYT 150

[Close]
BLAST of MELO.jh003386.1 vs. NCBI nr
Match: KAA0036957.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.15e-18
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 371 IPYNSYVPAHTVSETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 420

[Close]
BLAST of MELO.jh003386.1 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.15e-18
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 908 IPYNSYVPAHTVSETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 957

[Close]
BLAST of MELO.jh003386.1 vs. NCBI nr
Match: KAA0036942.1 (uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.15e-18
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 371 IPYNSYVPAHTVSETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 420

[Close]
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match: A0A5A7VIB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00870 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.08e-19
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 114 IPYNSYVPAHTISETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 163

[Close]
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.56e-19
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0 

Query: 3   YNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           YNSYVPT+T  ETPKPVNSNSPRPFVQGQGSKT+SDT RFDLI MTYT
Sbjct: 103 YNSYVPTHTVSETPKPVNSNSPRPFVQGQGSKTSSDTWRFDLIPMTYT 150

[Close]
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match: A0A5A7T5W6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00370 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.56e-19
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 371 IPYNSYVPAHTVSETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 420

[Close]
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.56e-19
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 908 IPYNSYVPAHTVSETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 957

[Close]
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match: A0A5A7T0H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00180 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.56e-19
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 1   MPYNSYVPTYTFFETPKPVNSNSPRPFVQGQGSKTNSDTLRFDLILMTYT 50
           +PYNSYVP +T  ETPKPVNSNSPRPFVQGQGSKTNSDT RFD I MTYT
Sbjct: 371 IPYNSYVPAHTVSETPKPVNSNSPRPFVQGQGSKTNSDTWRFDPIPMTYT 420

The following BLAST results are available for this feature:
BLAST of MELO.jh003386.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066096.18.42e-1984.00uncharacterized protein E6C27_scaffold21G00870 [Cucumis melo var. makuwa][more]
KAA0037621.11.15e-1887.50uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa][more]
KAA0036957.11.15e-1884.00RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
KAA0036933.11.15e-1884.00uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa][more]
KAA0036942.11.15e-1884.00uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh003386.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VIB24.08e-1984.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T7R45.56e-1987.50Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282... [more]
A0A5A7T5W65.56e-1984.00RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein... [more]
A0A5A7T1W25.56e-1984.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7T0H85.56e-1984.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO.jh003386.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh003386.1.t1MELO.jh003386.1.t1mRNA