MC11g_new0511 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0511
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Replication protein A subunit
Location	MC11: 19699237 .. 19702380 (+)
RNA-Seq Expression	MC11g_new0511
Synteny	MC11g_new0511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGTGTGGCACGCAGGTGGGTGGACAAACGAGCCGTGGTGGTAGAGTGCATGCTACTCAGGGTATGGCACGCGAGTGGGTGGGCCAATGGTCCGCAGCAACCTTGGACCATGTACATATTACCACGTGGTCATGAGTGGTTAGGCCATTGGGTTGCAGTAGGGCACGCGTGCCACGTGGTTGGGATCGATAGGGGAGTGGGTTTGTTGATAGCCTCGATATGGCTATATTTTATCATCATTATAGTGGAATTAATTGCTAGTTTCCGTTTCTTTATGATAAATTCACATGCATAAATGTTATTTTGTAGAAATAAGATATCAAGAAGAATCAGGACATTGAATTGATCAAATAGAGTGAAAGGTCATAGTCCGAGCAAGTTGAGAAGGCCCTACAACACGATTTAGAGCCAGAAGACCCGAGGGTGTAGGGTTGAGACGCGACCAGAGCATCTCAATGCTCAAATAATGAAGCTCAACCAAATGACTCGTAAGAGTAGTGTCTCAACGTTACATCAAGGCGTCTCAATGCTACGATGAAAAGCGAGACAATTGACGCTTCGCGTTGTAACATCTCAATGTTATACGTAGCATCTTGACGCTACGACGCCATGATTCGTTTTTGCTAGCATTCTAGGGTACATCATTGAGACGATGCCCTAGCGTCTCAACGCTATCCTGAATTTTTCTATAAAATAGAGCCTTCGCAGATCAATTGGAGAGGGAGCACAGAGTGAAATTTGCAGAGTATCTCGATGAAGAAGTCGGGTTTTGAAGATCGATCGTGGAGATTGAGTCGGGGACAATCAATCAATGCAACAGATTCACTTGCTATCTCTTTTCTTTTATTTTGCTAGTTTAATCATGAACATGAGTAGCTAAATTTCATTGTCTTAGGGATTGATGTAGCCATTGACGTTTATGGATTGAATGTTTGATTTTCTTGATCGAAGGCATTTGTTTATTCTATTTATGTTTCTCTTTGCTTCATGCCTTTAATCTACTGGCAACAGATTAATTGATCTTAGACTTACAATCTTACGCTCGAGAGAGGTGGTTGAGAGTTGAGAACTGAGATTCATAATTAGAGAGGTTTTAAGATCGGGAGATTTAGAATTCCTTTAGAGGTTGTTAAGAGACTTGTTCATTAAAGTTTTACCTGTTAGAAAACTAGATAAAGATATTGATTTCATAATTTAATAAGGTGATTTAATTTGGCTTGGCTCGGGGGAGGCAGTTGAGATTTGAGAATTCTTGACTTGTAGAATTGACAGTCTGTCCAATCTTGATTAATTAAATGATTGGTTGATTGATTCAATCAGTGAAATTTATTCCCTAAGATCGTTCTTCCCATTGAATTTACATTCTTTAATCATTTATGTTAATTTGGTTTAATCGTATTACAATTTGATTTTCTAAATAAAATCGGGTAAAAATATCTATTGTACTTGAGACATTTAGAAACTCAATCCTGAGGACGATATTGATATTTACTTACCAACTATATTAAAACTTGACCCGTACACTTGCGGTTAGCAATTTCTACTAAATTTGTGCTTCCACTCGTTCGAACTGTTAGTGGGGTCGGGCGTGAGGCTGGTCTAGCATCCGATCAATGTACGACTGTTTGTGCCGTCCCCCAACAATATAAATCTATAATATATTAAAAAGATAGCATCTCTGAAAAACATTTTTGGACAATGATACCCCTATATATTTTTGATTAATTACATTATTGCCATTAATGGTTACTATTACGTGCCACCTCATTATTTTTACCGATTTACCCTCACTCCGTATTTATAATGGAAACGTTAAATTAAGACATTTATTTGGATTTGGACTTTTCTTCCCTATTACTTTATTAAATTTGGTGGCCACTAGCCATGATTTCATACGTTTTCAGTTATAAATAATTGCAATTTATTAGATTGACCTTTTAATTCCTTTTATGTTACTAATTAAACATGGAAAAAAATGTATAAATATGGTTAAATTAACAATTTCCATATCCGAATTTGGTAATTGAGGAGCTCTCTTTTTGGTAATTCAAATTCTGAAATTTGGTAAATCAATATTCTTAGATTGCAAAGATGAATATGGTGATTGACGACCTTAGGCCTTTTCAAAAGGGTTGGACAATTACGGTTACCATTGTTCGAAAATTTTACATACAAAATGTGACAAACAGAAAAGGGGAACCATTGAGAATCATGAAATTCATAGTGCTCGACACAAAGGTAATTTTTTTATTGAGCAAATTAGTCTTTGTCGTCCAATTTTTGATCTCTCCCACTTATCTATAATAATGTTCCACAATGCAGGGAGTTTGTATTCAAGTCAATCTGTTTAACGACTTGATTGAAAAGTTTGGAGACATGTTGGAAAAGGGAAAAACATATGCGATCAATGATGGAAACATCAAACCAATTGATGTGAGATACATGAATGTTCAATCCAAAATTGAGATATCATTATCTCAAAACAGCAAGGTGAAAGAAATTGAAGGAGAAACATTCTTTCTCACGAAACAAGATTTTTGCAATTTTGAATCGGTTCTCGATTATCAGAGCATAGGTACCTACCTAAATTTTTGTAAAGACATTGTCATAATTATTTTATTATTTAATTAGTTGAAATAATGTTTTTTTTTTCAGATGTGATAGGTGGAGTTGTACAAATAAAACCTATAATTTTCAGAAAGACTCGTGATGGAAATTATTCAAAGAAAAGGGAAGTTCTACTTGTGGACAATAAGTAAGTTTCTATTGTATATTACAAATTTCAAATGATTTAGATACATACTATTTACCTAATCTTTTCTTATTCTTATTACATATATAGGTTGAATACAATAAAATTGACACTGTGGGACGATTTAGCGGAAAATGAAGGGCAATATCTAGAAGAAAATGGCAAGACACAAACCGTGATTCTAATCACAAATGTCAGACCTAACCAATTTGAAGGTACTTATTTGTTTGTAAAGCAATTCAATGTTGTGAACACAAATCTATAAACTAAACACTACAACTTAAAATTACAGGTGAGGTTAGCATATCATCTTCAAATATTAGTGTAGTTGCCATAAATCCATTGTTGAATGAAACTGAGACATTGAAGTGCAGGCAAGTATTTTAA

mRNA sequence

ATGCTAGGTGTGGCACGCAGGTGGGTGGACAAACGAGCCGTGGTGGTAGAGTGCATGCTACTCAGGGTATGGCACGCGAGTGGGTGGGCCAATGGTCCGCAGCAACCTTGGACCATGTACATATTACCACGTGGTCATGAGTGGTTAGGCCATTGGGTTGCAGTAGGGCACGCGTGCCACGTGGTTGGGATCGATAGGGGAATTGCAAAGATGAATATGGTGATTGACGACCTTAGGCCTTTTCAAAAGGGTTGGACAATTACGGTTACCATTGTTCGAAAATTTTACATACAAAATGTGACAAACAGAAAAGGGGAACCATTGAGAATCATGAAATTCATAGTGCTCGACACAAAGGGAGTTTGTATTCAAGTCAATCTGTTTAACGACTTGATTGAAAAGTTTGGAGACATGTTGGAAAAGGGAAAAACATATGCGATCAATGATGGAAACATCAAACCAATTGATGTGAGATACATGAATGTTCAATCCAAAATTGAGATATCATTATCTCAAAACAGCAAGGTGAAAGAAATTGAAGGAGAAACATTCTTTCTCACGAAACAAGATTTTTGCAATTTTGAATCGGTTCTCGATTATCAGAGCATAGATGTGATAGGTGGAGTTGTACAAATAAAACCTATAATTTTCAGAAAGACTCGTGATGGAAATTATTCAAAGAAAAGGGAAGTTCTACTTGTGGACAATAAGTTGAATACAATAAAATTGACACTGTGGGACGATTTAGCGGAAAATGAAGGGCAATATCTAGAAGAAAATGGCAAGACACAAACCGTGATTCTAATCACAAATGTCAGACCTAACCAATTTGAAGGTGAGGTTAGCATATCATCTTCAAATATTAGTGTAGTTGCCATAAATCCATTGTTGAATGAAACTGAGACATTGAAGTGCAGGCAAGTATTTTAA

Coding sequence (CDS)

ATGCTAGGTGTGGCACGCAGGTGGGTGGACAAACGAGCCGTGGTGGTAGAGTGCATGCTACTCAGGGTATGGCACGCGAGTGGGTGGGCCAATGGTCCGCAGCAACCTTGGACCATGTACATATTACCACGTGGTCATGAGTGGTTAGGCCATTGGGTTGCAGTAGGGCACGCGTGCCACGTGGTTGGGATCGATAGGGGAATTGCAAAGATGAATATGGTGATTGACGACCTTAGGCCTTTTCAAAAGGGTTGGACAATTACGGTTACCATTGTTCGAAAATTTTACATACAAAATGTGACAAACAGAAAAGGGGAACCATTGAGAATCATGAAATTCATAGTGCTCGACACAAAGGGAGTTTGTATTCAAGTCAATCTGTTTAACGACTTGATTGAAAAGTTTGGAGACATGTTGGAAAAGGGAAAAACATATGCGATCAATGATGGAAACATCAAACCAATTGATGTGAGATACATGAATGTTCAATCCAAAATTGAGATATCATTATCTCAAAACAGCAAGGTGAAAGAAATTGAAGGAGAAACATTCTTTCTCACGAAACAAGATTTTTGCAATTTTGAATCGGTTCTCGATTATCAGAGCATAGATGTGATAGGTGGAGTTGTACAAATAAAACCTATAATTTTCAGAAAGACTCGTGATGGAAATTATTCAAAGAAAAGGGAAGTTCTACTTGTGGACAATAAGTTGAATACAATAAAATTGACACTGTGGGACGATTTAGCGGAAAATGAAGGGCAATATCTAGAAGAAAATGGCAAGACACAAACCGTGATTCTAATCACAAATGTCAGACCTAACCAATTTGAAGGTGAGGTTAGCATATCATCTTCAAATATTAGTGTAGTTGCCATAAATCCATTGTTGAATGAAACTGAGACATTGAAGTGCAGGCAAGTATTTTAA

Protein sequence

MLGVARRWVDKRAVVVECMLLRVWHASGWANGPQQPWTMYILPRGHEWLGHWVAVGHACHVVGIDRGIAKMNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQDFCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLAENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCRQVF

Homology

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BLAST of MC11g_new0511 vs. ExPASy Swiss-Prot
Match: Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-28
Identity = 80/234 (34.19%), Postives = 126/234 (53.85%), Query Frame = 0


Query: 78  LRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGD 137
           L P+Q  WTI V +  K  ++N  N +GE   +    + D +G  IQ  +FND   KF D
Sbjct: 187 LNPYQGNWTIKVRVTNKGVMRNYKNARGEGC-VFNVELTDEEGTQIQATMFNDAARKFFD 246

Query: 138 MLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNFE 197
             + GK Y I+ G++K  + ++  VQ+  E++L++NS+V+E   E  F+  TK +F   E
Sbjct: 247 RFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIE 306

Query: 198 SVLDY----QSIDVIGGVVQIKPII-FRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLA 257
            +  Y    + ID+IG V  + P +  R+  D     KR++ L D    T+ ++LW+DLA
Sbjct: 307 ELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLA 366

Query: 258 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
              GQ L +      VI I +++   F+G VS+S+ + S V INP   E + LK
Sbjct: 367 TGIGQELLDMADQSPVIAIKSLKVGDFQG-VSLSTISRSNVVINPESPEAKKLK 418

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BLAST of MC11g_new0511 vs. ExPASy Swiss-Prot
Match: Q9SD82 (Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA1B PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.5e-27
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 0


Query: 78  LRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGD 137
           L P+Q  WTI V +  K  ++   N +GE   +    + D +G  IQ  +FN    KF D
Sbjct: 163 LNPYQGSWTIKVRVTNKGVMRTYKNARGEGC-VFNVELTDEEGTQIQATMFNAAARKFYD 222

Query: 138 MLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNFE 197
             E GK Y I+ G++K  + ++  VQ+  E++L++NS+V+E   E  F   TK +F   +
Sbjct: 223 RFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPID 282

Query: 198 SVLDYQS----IDVIGGVVQIKPII-FRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLA 257
            +  Y +    IDVIG V  + P +  R+  D     KR++ L D    T+ ++LW+DLA
Sbjct: 283 ELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLA 342

Query: 258 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
              GQ L +      VI I +++   F+G VS+S+ + S V INP   E   LK
Sbjct: 343 TGIGQELLDMADNHPVIAIKSLKVGAFQG-VSLSTISRSNVVINPNSPEATKLK 394

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BLAST of MC11g_new0511 vs. ExPASy Swiss-Prot
Match: Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-27
Identity = 72/233 (30.90%), Postives = 127/233 (54.51%), Query Frame = 0


Query: 78  LRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGD 137
           L P+Q  W I V +  K  ++   N +GE   +    + D  G  IQ  +FN+  +KF  
Sbjct: 192 LNPYQGNWIIKVRVTSKGNLRTYKNARGEGC-VFNVELTDVDGTQIQATMFNEAAKKFYP 251

Query: 138 MLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQ-DFCNFES 197
           M E GK Y I+ G+++  + ++  V +  E++L++N+ V+E EGETF    Q +F   + 
Sbjct: 252 MFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQIQYNFVKIDQ 311

Query: 198 VLDY----QSIDVIGGVVQIKPII-FRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLAE 257
           +  Y    + +DVIG V  + P +  R+  D     KR++++ D+   T+ ++LW+DLA 
Sbjct: 312 LGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLAT 371

Query: 258 NEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
             GQ L +   +  +I I +++ + F+G +S+S+   S + +NP L E E L+
Sbjct: 372 TTGQELLDMVDSAPIIAIKSLKVSDFQG-LSLSTVGRSTIVVNPDLPEAEQLR 422

[Close]

BLAST of MC11g_new0511 vs. ExPASy Swiss-Prot
Match: F4JSG3 (Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=3702 GN=RPA1E PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-20
Identity = 65/238 (27.31%), Postives = 121/238 (50.84%), Query Frame = 0


Query: 75  IDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEK 134
           ++ L P+   WTI   +  K  ++  +N +GE  ++  F +LD  G  I+V  FN + ++
Sbjct: 231 VNALSPYSGRWTIKARVTNKAALKQYSNPRGEG-KVFNFDLLDADGGEIRVTCFNAVADQ 290

Query: 135 FGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQDFCNF 194
           F D +  G  Y I+ G+++P    + ++++  EI L   S +K+   E   + +  F +F
Sbjct: 291 FYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQF-HF 350

Query: 195 ESVLDYQS------IDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDD 254
            ++ D +S      +DVIG V  I P +    ++G  + KR + L D    ++++T+W D
Sbjct: 351 RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGD 410

Query: 255 LAENEGQYLEE--NGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
               EGQ L+   +     V+ +   R ++F G+ ++S+   S + I+P   E E LK
Sbjct: 411 FCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGK-TVSTIGSSQLFIDPDFVEAEKLK 465

[Close]

BLAST of MC11g_new0511 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-20
Identity = 67/238 (28.15%), Postives = 120/238 (50.42%), Query Frame = 0


Query: 75  IDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEK 134
           I  L P+Q  W I   +  K  I+   N KG+  ++  F +LD+ G  I+V  FN L+++
Sbjct: 214 ISALNPYQGRWAIKARVTAKGDIRRYHNAKGDG-KVFSFDLLDSDGGEIRVTCFNALLDR 273

Query: 135 FGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQ--DFC 194
           F +++E GK Y ++ GN++P    Y ++ ++ EI L   S V     E   +  Q  DF 
Sbjct: 274 FYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDENSSIPTQRFDFR 333

Query: 195 NFESVLDYQS---IDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDL 254
               + D Q+   +D+IG V  + P    + ++G  ++KR + L D    ++++T+W D 
Sbjct: 334 PINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKDMSGRSVEVTMWGDF 393

Query: 255 AENEGQYLE---ENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
              EG  L+   E G    V+ +   + + F G+ S+ + + + + INP   E  +L+
Sbjct: 394 CNREGSQLQGMVERG-IFPVLAVKAGKVSDFSGK-SVGTISSTQLFINPDSAEAHSLR 448

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BLAST of MC11g_new0511 vs. NCBI nr
Match: XP_022155232.1 (replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia])

HSP 1 Score: 470 bits (1210), Expect = 2.50e-165
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 71  MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND 130
           MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND
Sbjct: 1   MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND 60

Query: 131 LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQD 190
           LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNV SKIEISLSQNSKVKEIEGETFFLTKQD
Sbjct: 61  LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVHSKIEISLSQNSKVKEIEGETFFLTKQD 120

Query: 191 FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLA 250
           FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLL+DNKLNTIKLTLWDDLA
Sbjct: 121 FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLMDNKLNTIKLTLWDDLA 180

Query: 251 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCR 306
           ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCR
Sbjct: 181 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCR 236

[Close]

BLAST of MC11g_new0511 vs. NCBI nr
Match: ONK81712.1 (uncharacterized protein A4U43_C01F32110, partial [Asparagus officinalis])

HSP 1 Score: 130 bits (326), Expect = 3.99e-32
Identity = 78/245 (31.84%), Postives = 136/245 (55.51%), Query Frame = 0


Query: 70  KMNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFN 129
           + N+ I +L+ +QK W+I V ++R   I +  N +G      K I++D +G  IQ  LFN
Sbjct: 11  QANIAIRELKIYQKQWSINVRVLRNT-IDSFKNGEGNK---QKLILIDEEGTLIQAILFN 70

Query: 130 DLIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEG-------E 189
            LIEKF  +L KG+TY I +G +KP +++Y  +  + E++L+  + ++E +        +
Sbjct: 71  KLIEKFSGLLIKGETYTITNGEVKPSNLKYPTINPEKELALTTKTIIRETKKIVSLEKLK 130

Query: 190 TFFLTKQDFCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIK 249
             FL+ +D   F++ +     DV+G V  +KPI          SK+REV++++ + + I 
Sbjct: 131 PTFLSFKDASAFDNGI--MPFDVVGFVTTVKPIFTNPK-----SKRREVIIMNKEFDQIS 190

Query: 250 LTLWDDLAENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETET 307
           +TLW DLAE EG  LE     + V+ + +V   ++ GE   S+ + ++V +NP     E 
Sbjct: 191 VTLWGDLAEIEGSSLENLKDAKPVVALLSVIGRRYLGEFQSSTKSSTLVLVNP-----EI 239

[Close]

BLAST of MC11g_new0511 vs. NCBI nr
Match: XP_010258039.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nelumbo nucifera])

HSP 1 Score: 135 bits (340), Expect = 1.37e-31
Identity = 76/235 (32.34%), Postives = 132/235 (56.17%), Query Frame = 0


Query: 77  DLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFG 136
            L P+Q  WTI V +  K  ++   N +GE   +    + D  G  IQ  +FND  +KF 
Sbjct: 187 SLNPYQGNWTIKVRVTNKGIMRTYRNARGEGC-VFNVELTDEDGTQIQATMFNDAAKKFF 246

Query: 137 DMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNF 196
           D  E GK Y I+ G +K  + ++  V++  E++L++NS+V+E  GE  F+  TK +F   
Sbjct: 247 DKFELGKVYYISRGTLKVANKQFKTVENDYEMTLNENSEVEEAAGEKAFVPETKFNFVPI 306

Query: 197 ESVLDY----QSIDVIGGVVQIKPIIFRKTRDGNYS-KKREVLLVDNKLNTIKLTLWDDL 256
           + +  Y    + +D+IG V  + P +  + +  N +  KR++ + D    T+ ++LW++L
Sbjct: 307 DQLGPYVNGKEFVDIIGVVQNVSPTLSVRRKSNNENIPKRDITIADESKKTVVVSLWNEL 366

Query: 257 AENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 304
           A N GQ L +  +T  ++ + +++   F+G VS+SS N SVV +NP + E++ LK
Sbjct: 367 ATNVGQELLDMAETSPIVALKSLKVGDFQG-VSLSSLNRSVVLVNPDIPESKKLK 419

[Close]

BLAST of MC11g_new0511 vs. NCBI nr
Match: KAG1341940.1 (replication protein A 70 kDa DNA-binding subunit B [Cocos nucifera])

HSP 1 Score: 132 bits (333), Expect = 1.14e-30
Identity = 76/234 (32.48%), Postives = 131/234 (55.98%), Query Frame = 0


Query: 77  DLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFG 136
            L P+Q  WTI V +  K  +++  N +GE L +    + D  G  IQ  +FN+   KF 
Sbjct: 176 SLNPYQGNWTIKVRVTNKGSLRSYKNARGEGL-VFNIELTDEDGTQIQATMFNEAASKFY 235

Query: 137 DMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL-TKQDFCNFE 196
              E GK Y I+ G+++  + ++  VQ+  E++L++NS V+E +GE F   TK +F   +
Sbjct: 236 PKFELGKVYYISKGSLRVANRQFRTVQNDYEMNLNENSMVEEADGEAFIPETKYNFVKID 295

Query: 197 SVLDY----QSIDVIGGVVQIKPIIFRKTRDGNYS-KKREVLLVDNKLNTIKLTLWDDLA 256
            +  Y    + +D+IG V  + P +  + +  N +  KR++++ D+   T+ ++LW++LA
Sbjct: 296 QLGSYVNGRELVDIIGIVQNVSPTLSVRRKSNNETIPKRDIIVADDSSKTVTVSLWNELA 355

Query: 257 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 304
            N GQ L +   T  V+ I  ++   F+G VS+S+ + S V INP L E+E L+
Sbjct: 356 TNVGQELLDMADTTPVVAIKCLKVGDFQG-VSLSTLSRSTVLINPDLPESEKLR 407

[Close]

BLAST of MC11g_new0511 vs. NCBI nr
Match: KAA8522676.1 (hypothetical protein F0562_009162 [Nyssa sinensis])

HSP 1 Score: 132 bits (332), Expect = 2.92e-30
Identity = 75/272 (27.57%), Postives = 141/272 (51.84%), Query Frame = 0


Query: 43  PRGHEWLG----HWVAVGHACHVVGIDRGIAKMNMVIDDLRPFQKGWTITVTIVRKFYIQ 102
           P  + W      HW    H   +      I  +N     L+P QK WTI   ++R+  I+
Sbjct: 45  PEAYTWTAGIRFHWRLSSHLQSLTMSVESIIPIN----SLQPNQKIWTIEAMVLRQGTIE 104

Query: 103 NVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGDMLEKGKTYAINDGNIKPIDVR 162
              N +    RI K I++D  G  IQ  +FN+ + KF  + +  K Y I++G +K  + +
Sbjct: 105 TFNNVQNNG-RIWKMILVDNMGTKIQAVMFNEAVRKFEGIFQHSKAYLISNGTVKKPNEK 164

Query: 163 YMNVQSKIEISLSQNSKVKEIEGETF--FLTKQDFCNFESVLDYQSID----VIGGVVQI 222
           + NV   +E+ L  ++ V+E    TF   +   +F  F+ V  +  I+    + G V  +
Sbjct: 165 FTNVHPSLELVLQPHTDVRETTS-TFDAHIFAHEFVKFKKVQKHIEINSYVVIFGFVSNV 224

Query: 223 KPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLAENEGQYLEENGKTQTVILITNV 282
           +     K + G  + KRE+ +++ +L+++ +TLW D+A NEGQ LEEN   + +I+++++
Sbjct: 225 EQTYIIKKKTGGETHKREISIMNKELDSLPITLWGDMAVNEGQMLEENSDKKQIIIVSSL 284

Query: 283 RPNQFEGEVSISSSNISVVAINPLLNETETLK 304
             + ++G+  +S++N+S +  +P   + + LK
Sbjct: 285 NGSTYQGQFQLSTTNMSTIQFDPDFIQAQKLK 310

[Close]

BLAST of MC11g_new0511 vs. ExPASy TrEMBL
Match: A0A6J1DNS8 (replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia OX=3673 GN=LOC111022373 PE=4 SV=1)

HSP 1 Score: 470 bits (1210), Expect = 1.21e-165
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 71  MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND 130
           MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND
Sbjct: 1   MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND 60

Query: 131 LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQD 190
           LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNV SKIEISLSQNSKVKEIEGETFFLTKQD
Sbjct: 61  LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVHSKIEISLSQNSKVKEIEGETFFLTKQD 120

Query: 191 FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLA 250
           FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLL+DNKLNTIKLTLWDDLA
Sbjct: 121 FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLMDNKLNTIKLTLWDDLA 180

Query: 251 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCR 306
           ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCR
Sbjct: 181 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLKCR 236

[Close]

BLAST of MC11g_new0511 vs. ExPASy TrEMBL
Match: A0A5P1FUD9 (DUF223 domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=A4U43_C01F32110 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 1.93e-32
Identity = 78/245 (31.84%), Postives = 136/245 (55.51%), Query Frame = 0


Query: 70  KMNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFN 129
           + N+ I +L+ +QK W+I V ++R   I +  N +G      K I++D +G  IQ  LFN
Sbjct: 11  QANIAIRELKIYQKQWSINVRVLRNT-IDSFKNGEGNK---QKLILIDEEGTLIQAILFN 70

Query: 130 DLIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEG-------E 189
            LIEKF  +L KG+TY I +G +KP +++Y  +  + E++L+  + ++E +        +
Sbjct: 71  KLIEKFSGLLIKGETYTITNGEVKPSNLKYPTINPEKELALTTKTIIRETKKIVSLEKLK 130

Query: 190 TFFLTKQDFCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIK 249
             FL+ +D   F++ +     DV+G V  +KPI          SK+REV++++ + + I 
Sbjct: 131 PTFLSFKDASAFDNGI--MPFDVVGFVTTVKPIFTNPK-----SKRREVIIMNKEFDQIS 190

Query: 250 LTLWDDLAENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETET 307
           +TLW DLAE EG  LE     + V+ + +V   ++ GE   S+ + ++V +NP     E 
Sbjct: 191 VTLWGDLAEIEGSSLENLKDAKPVVALLSVIGRRYLGEFQSSTKSSTLVLVNP-----EI 239

[Close]

BLAST of MC11g_new0511 vs. ExPASy TrEMBL
Match: A0A1U7ZUH6 (Replication protein A subunit OS=Nelumbo nucifera OX=4432 GN=LOC104597938 PE=3 SV=1)

HSP 1 Score: 135 bits (340), Expect = 6.64e-32
Identity = 76/235 (32.34%), Postives = 132/235 (56.17%), Query Frame = 0


Query: 77  DLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFG 136
            L P+Q  WTI V +  K  ++   N +GE   +    + D  G  IQ  +FND  +KF 
Sbjct: 187 SLNPYQGNWTIKVRVTNKGIMRTYRNARGEGC-VFNVELTDEDGTQIQATMFNDAAKKFF 246

Query: 137 DMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNF 196
           D  E GK Y I+ G +K  + ++  V++  E++L++NS+V+E  GE  F+  TK +F   
Sbjct: 247 DKFELGKVYYISRGTLKVANKQFKTVENDYEMTLNENSEVEEAAGEKAFVPETKFNFVPI 306

Query: 197 ESVLDY----QSIDVIGGVVQIKPIIFRKTRDGNYS-KKREVLLVDNKLNTIKLTLWDDL 256
           + +  Y    + +D+IG V  + P +  + +  N +  KR++ + D    T+ ++LW++L
Sbjct: 307 DQLGPYVNGKEFVDIIGVVQNVSPTLSVRRKSNNENIPKRDITIADESKKTVVVSLWNEL 366

Query: 257 AENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 304
           A N GQ L +  +T  ++ + +++   F+G VS+SS N SVV +NP + E++ LK
Sbjct: 367 ATNVGQELLDMAETSPIVALKSLKVGDFQG-VSLSSLNRSVVLVNPDIPESKKLK 419

[Close]

BLAST of MC11g_new0511 vs. ExPASy TrEMBL
Match: A0A1J3I9V8 (Replication protein A subunit (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR16707_c3_g1_i1_g.53319 PE=3 SV=1)

HSP 1 Score: 131 bits (330), Expect = 3.59e-31
Identity = 81/235 (34.47%), Postives = 127/235 (54.04%), Query Frame = 0


Query: 77  DLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFG 136
            L P+Q  WTI V +  K  ++N  N KG+   +    + D +G  IQ  +FND   KF 
Sbjct: 20  SLNPYQGNWTIKVRVTNKGLMRNYRNAKGQGC-VFNVELTDEEGTQIQATMFNDAARKFF 79

Query: 137 DMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNF 196
           DM + GK Y I+ G++K  + ++  VQ+  E++L++NS+V+E   E  F+  TK +F   
Sbjct: 80  DMFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPI 139

Query: 197 ESVLDY----QSIDVIGGVVQIKPII-FRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDL 256
           E +  Y    + ID+IG V  + P +  R+  D     KR++ L D    T+ ++LW+DL
Sbjct: 140 EELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESNKTVVVSLWNDL 199

Query: 257 AENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 304
           A   GQ L +      VI I +++   F+G VS+S+ + S V INP   E + LK
Sbjct: 200 ATGIGQELLDMADMSPVIAIKSLKVGDFQG-VSLSTISRSNVMINPESPEAKKLK 252

[Close]

BLAST of MC11g_new0511 vs. ExPASy TrEMBL
Match: A0A1J3JP20 (Replication protein A subunit OS=Noccaea caerulescens OX=107243 GN=MP_TR14231_c0_g1_i1_g.41180 PE=3 SV=1)

HSP 1 Score: 132 bits (331), Expect = 9.27e-31
Identity = 87/263 (33.08%), Postives = 137/263 (52.09%), Query Frame = 0


Query: 58  ACHVVGIDRG----IAKMNMV-----IDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPL 117
           A  ++   RG     A+M M      +  L P+Q  WTI V +  K  ++N  N KG+  
Sbjct: 126 ASQIINEQRGNAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGLMRNYRNAKGQGC 185

Query: 118 RIMKFIVLDTKGVCIQVNLFNDLIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEI 177
            +    + D +G  IQ  +FND   KF DM + GK Y I+ G++K  + ++  VQ+  E+
Sbjct: 186 -VFNVELTDEEGTQIQATMFNDAARKFFDMFQLGKVYYISRGSLKLANKQFKTVQNDYEM 245

Query: 178 SLSQNSKVKEIEGETFFL--TKQDFCNFESVLDY----QSIDVIGGVVQIKPII-FRKTR 237
           +L++NS+V+E   E  F+  TK +F   E +  Y    + ID+IG V  + P +  R+  
Sbjct: 246 TLNENSEVEEASSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRT 305

Query: 238 DGNYSKKREVLLVDNKLNTIKLTLWDDLAENEGQYLEENGKTQTVILITNVRPNQFEGEV 297
           D     KR++ L D    T+ ++LW+DLA   GQ L +      VI I +++   F+G V
Sbjct: 306 DNEMIPKRDITLADESNKTVVVSLWNDLATGIGQELLDMADMSPVIAIKSLKVGDFQG-V 365

Query: 298 SISSSNISVVAINPLLNETETLK 304
           S+S+ + S V INP   E + LK
Sbjct: 366 SLSTISRSNVMINPESPEAKKLK 386

[Close]

BLAST of MC11g_new0511 vs. TAIR 10
Match: AT5G61000.1 (Replication factor-A protein 1-related )

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-29
Identity = 80/234 (34.19%), Postives = 126/234 (53.85%), Query Frame = 0


Query: 78  LRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGD 137
           L P+Q  WTI V +  K  ++N  N +GE   +    + D +G  IQ  +FND   KF D
Sbjct: 187 LNPYQGNWTIKVRVTNKGVMRNYKNARGEGC-VFNVELTDEEGTQIQATMFNDAARKFFD 246

Query: 138 MLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNFE 197
             + GK Y I+ G++K  + ++  VQ+  E++L++NS+V+E   E  F+  TK +F   E
Sbjct: 247 RFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIE 306

Query: 198 SVLDY----QSIDVIGGVVQIKPII-FRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLA 257
            +  Y    + ID+IG V  + P +  R+  D     KR++ L D    T+ ++LW+DLA
Sbjct: 307 ELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLA 366

Query: 258 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
              GQ L +      VI I +++   F+G VS+S+ + S V INP   E + LK
Sbjct: 367 TGIGQELLDMADQSPVIAIKSLKVGDFQG-VSLSTISRSNVVINPESPEAKKLK 418

[Close]

BLAST of MC11g_new0511 vs. TAIR 10
Match: AT5G08020.1 (RPA70-kDa subunit B )

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-28
Identity = 79/234 (33.76%), Postives = 122/234 (52.14%), Query Frame = 0


Query: 78  LRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEKFGD 137
           L P+Q  WTI V +  K  ++   N +GE   +    + D +G  IQ  +FN    KF D
Sbjct: 163 LNPYQGSWTIKVRVTNKGVMRTYKNARGEGC-VFNVELTDEEGTQIQATMFNAAARKFYD 222

Query: 138 MLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFL--TKQDFCNFE 197
             E GK Y I+ G++K  + ++  VQ+  E++L++NS+V+E   E  F   TK +F   +
Sbjct: 223 RFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPID 282

Query: 198 SVLDYQS----IDVIGGVVQIKPII-FRKTRDGNYSKKREVLLVDNKLNTIKLTLWDDLA 257
            +  Y +    IDVIG V  + P +  R+  D     KR++ L D    T+ ++LW+DLA
Sbjct: 283 ELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLA 342

Query: 258 ENEGQYLEENGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
              GQ L +      VI I +++   F+G VS+S+ + S V INP   E   LK
Sbjct: 343 TGIGQELLDMADNHPVIAIKSLKVGAFQG-VSLSTISRSNVVINPNSPEATKLK 394

[Close]

BLAST of MC11g_new0511 vs. TAIR 10
Match: AT4G19130.1 (Replication factor-A protein 1-related )

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-21
Identity = 65/238 (27.31%), Postives = 121/238 (50.84%), Query Frame = 0


Query: 75  IDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFNDLIEK 134
           ++ L P+   WTI   +  K  ++  +N +GE  ++  F +LD  G  I+V  FN + ++
Sbjct: 231 VNALSPYSGRWTIKARVTNKAALKQYSNPRGEG-KVFNFDLLDADGGEIRVTCFNAVADQ 290

Query: 135 FGDMLEKGKTYAINDGNIKPIDVRYMNVQSKIEISLSQNSKVKEIEGETFFLTKQDFCNF 194
           F D +  G  Y I+ G+++P    + ++++  EI L   S +K+   E   + +  F +F
Sbjct: 291 FYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQF-HF 350

Query: 195 ESVLDYQS------IDVIGGVVQIKPIIFRKTRDGNYSKKREVLLVDNKLNTIKLTLWDD 254
            ++ D +S      +DVIG V  I P +    ++G  + KR + L D    ++++T+W D
Sbjct: 351 RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGD 410

Query: 255 LAENEGQYLEE--NGKTQTVILITNVRPNQFEGEVSISSSNISVVAINPLLNETETLK 305
               EGQ L+   +     V+ +   R ++F G+ ++S+   S + I+P   E E LK
Sbjct: 411 FCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGK-TVSTIGSSQLFIDPDFVEAEKLK 465

The following BLAST results are available for this feature:

BLAST of MC11g_new0511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME0	2.0e-28	34.19	Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=37...	[more]
Q9SD82	6.5e-27	33.76	Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=37...	[more]
Q10Q08	8.5e-27	30.90	Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japoni...	[more]
F4JSG3	3.5e-20	27.31	Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=37...	[more]
Q6YZ49	5.9e-20	28.15	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]

BLAST of MC11g_new0511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155232.1	2.50e-165	99.15	replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]	[more]
ONK81712.1	3.99e-32	31.84	uncharacterized protein A4U43_C01F32110, partial [Asparagus officinalis]	[more]
XP_010258039.1	1.37e-31	32.34	PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nelumbo nuci...	[more]
KAG1341940.1	1.14e-30	32.48	replication protein A 70 kDa DNA-binding subunit B [Cocos nucifera]	[more]
KAA8522676.1	2.92e-30	27.57	hypothetical protein F0562_009162 [Nyssa sinensis]	[more]

BLAST of MC11g_new0511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNS8	1.21e-165	99.15	replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia O...	[more]
A0A5P1FUD9	1.93e-32	31.84	DUF223 domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=...	[more]
A0A1U7ZUH6	6.64e-32	32.34	Replication protein A subunit OS=Nelumbo nucifera OX=4432 GN=LOC104597938 PE=3 S...	[more]
A0A1J3I9V8	3.59e-31	34.47	Replication protein A subunit (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE...	[more]
A0A1J3JP20	9.27e-31	33.08	Replication protein A subunit OS=Noccaea caerulescens OX=107243 GN=MP_TR14231_c0...	[more]

BLAST of MC11g_new0511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61000.1	1.4e-29	34.19	Replication factor-A protein 1-related	[more]
AT5G08020.1	4.6e-28	33.76	RPA70-kDa subunit B	[more]
AT4G19130.1	2.5e-21	27.31	Replication factor-A protein 1-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 72..181 e-value: 8.5E-23 score: 82.6
None	No IPR available	GENE3D	2.40.50.140		coord: 186..307 e-value: 1.2E-21 score: 78.9
None	No IPR available	PANTHER	PTHR23273:SF32	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED	coord: 77..305
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 77..305
IPR031657	Replication protein A, OB domain	PFAM	PF16900	REPA_OB_2	coord: 195..292 e-value: 2.7E-10 score: 40.1
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 75..181
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 190..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0511.1	MC11g_new0511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003677	DNA binding