MC11g_new0446 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0446
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ribosomal RNA processing protein 36 homolog
Location	MC11: 17796295 .. 17797922 (+)
RNA-Seq Expression	MC11g_new0446
Synteny	MC11g_new0446

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCGAAGCAGTTCGGTTCCTAGCTCGAGCAAAGAAGTGATGGAAGACAGTGAGGATCTTGAATCTTCTTCCCCAGAAGATTTCGTTGACTCGTATCTTTTGTTAAGTGTATCTCAACAGCTTCTCAACAGTGTATCCTTCAAATCATGTAACCTTTACATGTATATCCCAAGATCATGTAAAACAATTGTATTCCCTATACTATATATACTCTTAATATGAATGAACAAATCATGGGCATTTATTCATTTCTTAAACCTTCTCATGGTATCAGAGCTTTCGACATACGCCTTCTTCCTTCGATCTTAATAGCACAGTCGCCATGTCGACCCTATTCCAAACTTCCCCAATTTTATTAAAAAAAAATTTCTCCCTTTCAAATTTCAGTTTTAATTACCCCACCCAAAATTTCATTACCTTCACCCAAATTTCACTCCTTTCCATTTTTGGCCTCATTCCCACACCATCTTTTACTCAATTCCCACGTCAATTTTCTTTCCCTTTCCCACATACACTTTGGCTTGACCCCACCTTCTATTTTATTTCTCTTTCTCCTTCAGCTCTTAATTACCTCATTCCTTTTCCCACACAGCAAACTACACAATGACCGATACAAATATTCATTCCAAATCGCACACCAAAATCGACCAATTTCCCACATCTTTCACCCTCGATCGTCAATTCTCTCCTTCATCGTGCTTCCTACTCTCAAATATTTGTACTCTTGTTTCTGTCCGGCTTGAGTCCAGTAACTATACTCTTTGGCGTTATCAACTCGACTCCATCTTGAAGGCACACAATCTCTTTGGTTTCATCTTTAACCAATTGAAATTATATTTATGTTACATTTTTTATTATTGAAATTCATGAATTATTTTATTTGCAATTTGAAGTTCACTCCATTTATATAGGAAGAAGAGAATATAGAGCGTGAACTTGCCGATATAACTTTTGAAGAGTTGCAGAGAGTGCGGTCTGATGGGTCGCATTTGACGTATCAAAAGACCAATCAAGAGAAGAAAGGTGGGAGGCCAAACAAGAACAGGTAGCTTATGGGTACTATTTTTCCCCTTATTTTATTTTTGCAAGTTAATTGAGTATATGATTTGTAATTTCTTCGTGAAGGCCAATGGAGGTTAGTAGTAAGAAACCAGTAGATTTAGATAAGTCAATCAGGCTCCTAAGAATGTGAGTTGGTTATTCCTTTTTGTTAGTTTATTGTCAAAATTTCTTGGATTTGCCTATATGGAGTTTAAAGCTAGTGAATTATAATGAGAGTAACATCTCACTTTATAGAGCTCGAATGCGACTTGAGATAATAGTTGCATTTCTCATTGATAATTTGTTGTGTTTCAGGTGGTATGAGATCCATGTTTCGAATCTTTATCTGGCACTTTCGATGTTGAGGGGTGAGTTTTTCTTTATTCGAGGTTTGATTAACTCTTTGACATGTTGTAGAATACTTTTATCTAGATGGATCTGCCAATGGATATGCTCGCCAATGGTGCTCAAATACATGGGCTGTTGCTGGGTATGTCGTGGGTGCACCATTGTCGACTTGCTACATGGGGATCGCCAGCAAACAGTTTATCAAATCGACGTTGGCGAATGTTGTCCACTAA

mRNA sequence

ATGAAGAAGCGAAGCAGTTCGGTTCCTAGCTCGAGCAAAGAAGTGATGGAAGACAGTGAGGATCTTGAATCTTCTTCCCCAGAAGATTTCGTTGACTCGTATCTTTTGTTAAGTGTATCTCAACAGCTTCTCAACAGTGAAGAAGAGAATATAGAGCGTGAACTTGCCGATATAACTTTTGAAGAGTTGCAGAGAGTGCGGTCTGATGGGTCGCATTTGACGTATCAAAAGACCAATCAAGAGAAGAAAGGTGGGAGGCCAAACAAGAACAGGCCAATGGAGGTTAGTAGTAAGAAACCAGTAGATTTAGATAAGTCAATCAGGCTCCTAAGAATGTGGTATGAGATCCATGTTTCGAATCTTTATCTGGCACTTTCGATGTTGAGGGATGGATCTGCCAATGGATATGCTCGCCAATGGTGCTCAAATACATGGGCTGTTGCTGGGTATGTCGTGGGTGCACCATTGTCGACTTGCTACATGGGGATCGCCAGCAAACAGTTTATCAAATCGACGTTGGCGAATGTTGTCCACTAA

Coding sequence (CDS)

ATGAAGAAGCGAAGCAGTTCGGTTCCTAGCTCGAGCAAAGAAGTGATGGAAGACAGTGAGGATCTTGAATCTTCTTCCCCAGAAGATTTCGTTGACTCGTATCTTTTGTTAAGTGTATCTCAACAGCTTCTCAACAGTGAAGAAGAGAATATAGAGCGTGAACTTGCCGATATAACTTTTGAAGAGTTGCAGAGAGTGCGGTCTGATGGGTCGCATTTGACGTATCAAAAGACCAATCAAGAGAAGAAAGGTGGGAGGCCAAACAAGAACAGGCCAATGGAGGTTAGTAGTAAGAAACCAGTAGATTTAGATAAGTCAATCAGGCTCCTAAGAATGTGGTATGAGATCCATGTTTCGAATCTTTATCTGGCACTTTCGATGTTGAGGGATGGATCTGCCAATGGATATGCTCGCCAATGGTGCTCAAATACATGGGCTGTTGCTGGGTATGTCGTGGGTGCACCATTGTCGACTTGCTACATGGGGATCGCCAGCAAACAGTTTATCAAATCGACGTTGGCGAATGTTGTCCACTAA

Protein sequence

MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITFEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPVDLDKSIRLLRMWYEIHVSNLYLALSMLRDGSANGYARQWCSNTWAVAGYVVGAPLSTCYMGIASKQFIKSTLANVVH

Homology

[Close]

BLAST of MC11g_new0446 vs. NCBI nr
Match: XP_022141752.1 (ribosomal RNA processing protein 36 homolog [Momordica charantia])

HSP 1 Score: 127 bits (318), Expect = 1.53e-32
Identity = 78/101 (77.23%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITF 60
           MKKRSSS    SK+VME+SEDLESSSPEDFVDS             EEENIERELAD+TF
Sbjct: 1   MKKRSSS----SKQVMEESEDLESSSPEDFVDS-------------EEENIERELADVTF 60

Query: 61  EELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           EELQR RSDGSH TYQKTNQEKKGGR NKNRPMEVSSKKPV
Sbjct: 61  EELQRARSDGSHSTYQKTNQEKKGGRANKNRPMEVSSKKPV 84

[Close]

BLAST of MC11g_new0446 vs. NCBI nr
Match: XP_023535518.1 (ribosomal RNA processing protein 36 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116 bits (290), Expect = 2.55e-28
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDS-EDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK  SSVPSSSK++MED  EDLE SS             S++ L+SEEENIERELAD+T
Sbjct: 1   MKKHCSSVPSSSKQMMEDEREDLEYSS-------------SEESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQRVRSDGSH  YQKTNQEKKG R NKNRPMEVSSKKPV
Sbjct: 61  FEELQRVRSDGSHSMYQKTNQEKKGRRANKNRPMEVSSKKPV 89

[Close]

BLAST of MC11g_new0446 vs. NCBI nr
Match: XP_008456647.1 (PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis melo] >XP_016902001.1 PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis melo] >XP_016902002.1 PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis melo] >KAA0031699.1 ribosomal RNA processing protein 36-like protein [Cucumis melo var. makuwa] >TYK04413.1 ribosomal RNA processing protein 36-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 2.55e-28
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMED-SEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK SSSVPSS K++ME+ SEDLESSS             S + L+SEEENIERELAD+T
Sbjct: 1   MKKYSSSVPSSGKQIMEEESEDLESSS-------------SDESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQR RSDGSH  YQKT QEKKGGR NKNRPMEVSS+KPV
Sbjct: 61  FEELQRARSDGSHSMYQKTKQEKKGGRANKNRPMEVSSRKPV 89

[Close]

BLAST of MC11g_new0446 vs. NCBI nr
Match: XP_022925402.1 (ribosomal RNA processing protein 36 homolog [Cucurbita moschata] >KAG7025163.1 Ribosomal RNA processing protein 36-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116 bits (290), Expect = 2.55e-28
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDS-EDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK  SSVPSSSK++MED  EDLE SS             S++ L+SEEENIERELAD+T
Sbjct: 1   MKKHCSSVPSSSKQMMEDEREDLEYSS-------------SEESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQRVRSDGSH  YQKTNQEKKG R NKNRPMEVSSKKPV
Sbjct: 61  FEELQRVRSDGSHSMYQKTNQEKKGRRANKNRPMEVSSKKPV 89

[Close]

BLAST of MC11g_new0446 vs. NCBI nr
Match: XP_022973531.1 (ribosomal RNA processing protein 36 homolog [Cucurbita maxima])

HSP 1 Score: 115 bits (287), Expect = 7.13e-28
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDS-EDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK  +SVPSSSK++MED  EDLE SS             S++ L+SEEENIERELAD+T
Sbjct: 1   MKKHCNSVPSSSKQMMEDEREDLEYSS-------------SEESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQRVRSDGSH  YQKTNQEKKG R NKNRPMEVSSKKPV
Sbjct: 61  FEELQRVRSDGSHSMYQKTNQEKKGRRANKNRPMEVSSKKPV 89

[Close]

BLAST of MC11g_new0446 vs. ExPASy TrEMBL
Match: A0A6J1CKR1 (ribosomal RNA processing protein 36 homolog OS=Momordica charantia OX=3673 GN=LOC111012036 PE=3 SV=1)

HSP 1 Score: 127 bits (318), Expect = 7.39e-33
Identity = 78/101 (77.23%), Postives = 81/101 (80.20%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITF 60
           MKKRSSS    SK+VME+SEDLESSSPEDFVDS             EEENIERELAD+TF
Sbjct: 1   MKKRSSS----SKQVMEESEDLESSSPEDFVDS-------------EEENIERELADVTF 60

Query: 61  EELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           EELQR RSDGSH TYQKTNQEKKGGR NKNRPMEVSSKKPV
Sbjct: 61  EELQRARSDGSHSTYQKTNQEKKGGRANKNRPMEVSSKKPV 84

[Close]

BLAST of MC11g_new0446 vs. ExPASy TrEMBL
Match: A0A1S3C3C0 (ribosomal RNA processing protein 36 homolog OS=Cucumis melo OX=3656 GN=LOC103496541 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.24e-28
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMED-SEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK SSSVPSS K++ME+ SEDLESSS             S + L+SEEENIERELAD+T
Sbjct: 1   MKKYSSSVPSSGKQIMEEESEDLESSS-------------SDESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQR RSDGSH  YQKT QEKKGGR NKNRPMEVSS+KPV
Sbjct: 61  FEELQRARSDGSHSMYQKTKQEKKGGRANKNRPMEVSSRKPV 89

[Close]

BLAST of MC11g_new0446 vs. ExPASy TrEMBL
Match: A0A5A7SR00 (Ribosomal RNA processing protein 36-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00090 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.24e-28
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMED-SEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK SSSVPSS K++ME+ SEDLESSS             S + L+SEEENIERELAD+T
Sbjct: 1   MKKYSSSVPSSGKQIMEEESEDLESSS-------------SDESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQR RSDGSH  YQKT QEKKGGR NKNRPMEVSS+KPV
Sbjct: 61  FEELQRARSDGSHSMYQKTKQEKKGGRANKNRPMEVSSRKPV 89

[Close]

BLAST of MC11g_new0446 vs. ExPASy TrEMBL
Match: A0A6J1EBL5 (ribosomal RNA processing protein 36 homolog OS=Cucurbita moschata OX=3662 GN=LOC111432703 PE=3 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.24e-28
Identity = 73/102 (71.57%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDS-EDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK  SSVPSSSK++MED  EDLE SS             S++ L+SEEENIERELAD+T
Sbjct: 1   MKKHCSSVPSSSKQMMEDEREDLEYSS-------------SEESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQRVRSDGSH  YQKTNQEKKG R NKNRPMEVSSKKPV
Sbjct: 61  FEELQRVRSDGSHSMYQKTNQEKKGRRANKNRPMEVSSKKPV 89

[Close]

BLAST of MC11g_new0446 vs. ExPASy TrEMBL
Match: A0A6J1I8W9 (ribosomal RNA processing protein 36 homolog OS=Cucurbita maxima OX=3661 GN=LOC111472062 PE=3 SV=1)

HSP 1 Score: 115 bits (287), Expect = 3.45e-28
Identity = 72/102 (70.59%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDS-EDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADIT 60
           MKK  +SVPSSSK++MED  EDLE SS             S++ L+SEEENIERELAD+T
Sbjct: 1   MKKHCNSVPSSSKQMMEDEREDLEYSS-------------SEESLDSEEENIERELADVT 60

Query: 61  FEELQRVRSDGSHLTYQKTNQEKKGGRPNKNRPMEVSSKKPV 101
           FEELQRVRSDGSH  YQKTNQEKKG R NKNRPMEVSSKKPV
Sbjct: 61  FEELQRVRSDGSHSMYQKTNQEKKGRRANKNRPMEVSSKKPV 89

[Close]

BLAST of MC11g_new0446 vs. TAIR 10
Match: AT1G12650.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-09
Identity = 50/103 (48.54%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITF 60
           MK       SSSK V EDSE+ E             LS S    + EEE  E+EL   TF
Sbjct: 1   MKGAGKFEGSSSKIVFEDSEEDED------------LSCSSVSSSDEEEETEKEL---TF 60

Query: 61  EELQRVRSDGSHLTYQKTNQEKKGG--RPNKNRPMEVSSKKPV 102
           EE+ ++R+DGS     K NQ KK G  R NKNRPMEVSSKKPV
Sbjct: 61  EEIHKLRADGSKAVPWKPNQVKKTGRARANKNRPMEVSSKKPV 88

[Close]

BLAST of MC11g_new0446 vs. TAIR 10
Match: AT1G12650.2 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-09
Identity = 50/103 (48.54%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITF 60
           MK       SSSK V EDSE+ E             LS S    + EEE  E+EL   TF
Sbjct: 1   MKGAGKFEGSSSKIVFEDSEEDED------------LSCSSVSSSDEEEETEKEL---TF 60

Query: 61  EELQRVRSDGSHLTYQKTNQEKKGG--RPNKNRPMEVSSKKPV 102
           EE+ ++R+DGS     K NQ KK G  R NKNRPMEVSSKKPV
Sbjct: 61  EEIHKLRADGSKAVPWKPNQVKKTGRARANKNRPMEVSSKKPV 88

[Close]

BLAST of MC11g_new0446 vs. TAIR 10
Match: AT1G12650.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-09
Identity = 50/103 (48.54%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITF 60
           MK       SSSK V EDSE+ E             LS S    + EEE  E+EL   TF
Sbjct: 1   MKGAGKFEGSSSKIVFEDSEEDED------------LSCSSVSSSDEEEETEKEL---TF 60

Query: 61  EELQRVRSDGSHLTYQKTNQEKKGG--RPNKNRPMEVSSKKPV 102
           EE+ ++R+DGS     K NQ KK G  R NKNRPMEVSSKKPV
Sbjct: 61  EEIHKLRADGSKAVPWKPNQVKKTGRARANKNRPMEVSSKKPV 88

[Close]

BLAST of MC11g_new0446 vs. TAIR 10
Match: AT1G12650.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.6e-09
Identity = 50/103 (48.54%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MKKRSSSVPSSSKEVMEDSEDLESSSPEDFVDSYLLLSVSQQLLNSEEENIERELADITF 60
           MK       SSSK V EDSE+ E             LS S    + EEE  E+EL   TF
Sbjct: 1   MKGAGKFEGSSSKIVFEDSEEDED------------LSCSSVSSSDEEEETEKEL---TF 60

Query: 61  EELQRVRSDGSHLTYQKTNQEKKGG--RPNKNRPMEVSSKKPV 102
           EE+ ++R+DGS     K NQ KK G  R NKNRPMEVSSKKPV
Sbjct: 61  EEIHKLRADGSKAVPWKPNQVKKTGRARANKNRPMEVSSKKPV 88

The following BLAST results are available for this feature:

BLAST of MC11g_new0446 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0446 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141752.1	1.53e-32	77.23	ribosomal RNA processing protein 36 homolog [Momordica charantia]	[more]
XP_023535518.1	2.55e-28	71.57	ribosomal RNA processing protein 36 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_008456647.1	2.55e-28	70.59	PREDICTED: ribosomal RNA processing protein 36 homolog [Cucumis melo] >XP_016902...	[more]
XP_022925402.1	2.55e-28	71.57	ribosomal RNA processing protein 36 homolog [Cucurbita moschata] >KAG7025163.1 R...	[more]
XP_022973531.1	7.13e-28	70.59	ribosomal RNA processing protein 36 homolog [Cucurbita maxima]	[more]

BLAST of MC11g_new0446 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKR1	7.39e-33	77.23	ribosomal RNA processing protein 36 homolog OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A1S3C3C0	1.24e-28	70.59	ribosomal RNA processing protein 36 homolog OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A5A7SR00	1.24e-28	70.59	Ribosomal RNA processing protein 36-like protein OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1EBL5	1.24e-28	71.57	ribosomal RNA processing protein 36 homolog OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1I8W9	3.45e-28	70.59	ribosomal RNA processing protein 36 homolog OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MC11g_new0446 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12650.1	3.6e-09	48.54	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 ...	[more]
AT1G12650.2	3.6e-09	48.54	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 ...	[more]
AT1G12650.3	3.6e-09	48.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G12650.4	3.6e-09	48.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..98
IPR009292	rRNA biogenesis protein RRP36	PANTHER	PTHR21738	UNCHARACTERIZED	coord: 21..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0446.1	MC11g_new0446.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0030686	90S preribosome
cellular_component	GO:0005730	nucleolus