MC11g_new0405 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g_new0405
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC11: 16628195 .. 16629856 (+)
RNA-Seq ExpressionMC11g_new0405
SyntenyMC11g_new0405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTATCCAAAACTTAGGAGTTCTTTATAACCCTAGAATTTAATTAATTCCATGTACATATTTATGTTTCTCTCTCTTAGAATGAATTAGAATCCACCGTAACATTTACATGCATTTAAAATGTACTAATGATTGCATAAAGAATTTATTATATTCTTGGGGGCAATCTATAGTATATTTAGATAAGTTTTTTCCTTCTCCTAAAAAAACAAATCTCTATCTTTCCCATACAAACATTTATTATCATAAATTTTAAAAATAAATAAATAAAAAAATTTATCTTTCCCACGTATCATTTCCCATGTGTCGATATCATAAAAAGGTATCTCGCATGCATCATTTCATATGTTCATAATCATTTAAAAAATTCCTACAATTTGTGATCCAACATTTGCATAACGTCGTCACATGCGTACCAAATTCTATCCTAAGAAAAAACCTGTGTATTTTCCATTACAACATCAACACGACCTCTTAGAAAAAATAGTTCAACAACCACATATTCATCATTCTTTATATACAAGGTACATAAAGCAAAATGCTGAGCTAAACAAAATTAGAGACGAAATTCACGAGCAAGTCATGGAAGAATTGAATGCCGAGCTAAAGAAAATGAGAGACAAGGTCCAAGAACATGTCACAGAGATGCAGAATAAGATGAGGCAAGAGATCAATAAGATTCAAGAGCAAATAAAAAAGATTTGCAATATCTTAGAGAAGAATATCACAGTCGGGGGCATTTCTCAACCTAACAGTTTATTTGAACTTCATAATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAACCAATAGAAGACTCCCTCCAGCATAATTCGTCACATGACACTCAACAAACTCCTACAATATGTTAGGCTGAATTTACATTCCAAGATGGACAAACATCAAAGGCCAATTATCTAAATAATTTAAAAGGCAAAGAAAAAGACAATGTTACCAATGGAAATGTTGAAGAAACCGAGGAAATTTTTGTTATAAATCGATTCAAGCATGACATAGGTATGGCCCAAGCTCAATAGAGAATGGAAAGGGAAAGTATAGGGAAATAATATGCTCAAAGATAGAAAGAAGCAACTGAACAAGTGCCAGTGCCTTTAATTGATAAAGAGCTACATCTTGAAAAGAATAGAAGCTCTATTAAAAGAAAAATAAAATCCAGACAGTAATTTCAAAGCACAAATGGAAGTACCAACAAGGATTCATGGCATACAATCCTTCTACAGTACCCATAAACTCATTGACTCTGCTTAATGGCCCACATCTAAGATTGCCCGCATTACCTGACAATTATAATAGTCGGAGGTAACTAAAGTGAGAAAGCTTTCATCCAATTCCAATATCCTATACTGAGTTGTTACCACAATTATTTCAAAGTCATCTATTAGCTCTAGTACCCGTAGAACCATTGCAGCCACCTTATCCAAAGTGGTACGACCCGCAAGTCCGCTGTGATTACCATGTAGGAGCTGTAGGTCATTCAATCGAGAATTGTACTTCACTAAAGCATAAAGTGCAAGTTCTAATGAAGGCAGGATGACTAAAGTTTTCAAAGGAAGATGGTCAGCACATGAAGCACTAGAATCATGAGTGTACAAGATTATGAAAATCAATGTTGACCTATTGCTTTGCTTTATCAATA

mRNA sequence

ATGCGTACCAAATTCTATCCTAAGAAAAAACCTGTGTATTTTCCATTACAACATCAACACGACCTCTTAGAAAAAATAGTTCAACAACCACATATTCATCATTCTTTATATACAAGGTACATAAAGCAAAATGCTGAGCTAAACAAAATTAGAGACGAAATTCACGAGCAAGTCATGGAAGAATTGAATGCCGAGCTAAAGAAAATGAGAGACAAGGTCCAAGAACATGTCACAGAGATGCAGAATAAGATGAGGCAAGAGATCAATAAGATTCAAGAGCAAATAAAAAAGATTTGCAATATCTTAGAGAAGAATATCACAGTCGGGGGCATTTCTCAACCTAACAGTTTATTTGAACTTCATAATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAACCAATAGAAGACTCCCTCCAGCATAATTCGTCACATGACACTCAACAAACTCCTACAATATGTTAG

Coding sequence (CDS)

ATGCGTACCAAATTCTATCCTAAGAAAAAACCTGTGTATTTTCCATTACAACATCAACACGACCTCTTAGAAAAAATAGTTCAACAACCACATATTCATCATTCTTTATATACAAGGTACATAAAGCAAAATGCTGAGCTAAACAAAATTAGAGACGAAATTCACGAGCAAGTCATGGAAGAATTGAATGCCGAGCTAAAGAAAATGAGAGACAAGGTCCAAGAACATGTCACAGAGATGCAGAATAAGATGAGGCAAGAGATCAATAAGATTCAAGAGCAAATAAAAAAGATTTGCAATATCTTAGAGAAGAATATCACAGTCGGGGGCATTTCTCAACCTAACAGTTTATTTGAACTTCATAATAATTCATCACCTAGGGTGGACCCACCTCTTTGTCAACCAATAGAAGACTCCCTCCAGCATAATTCGTCACATGACACTCAACAAACTCCTACAATATGTTAG

Protein sequence

MRTKFYPKKKPVYFPLQHQHDLLEKIVQQPHIHHSLYTRYIKQNAELNKIRDEIHEQVMEELNAELKKMRDKVQEHVTEMQNKMRQEINKIQEQIKKICNILEKNITVGGISQPNSLFELHNNSSPRVDPPLCQPIEDSLQHNSSHDTQQTPTIC
Homology
[Close]
BLAST of MC11g_new0405 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 134 bits (336), Expect = 1.86e-35
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 0 

Query: 44  NAELNKIRDEIHEQVMEELNAELKKMRDKVQEHVTEMQN----KMRQEINKIQEQIKKIC 103
           NAEL  I DEIHE+V+EELN ELKK+RD++QE V E+QN    KMRQ+I+ IQ+Q+ KI 
Sbjct: 5   NAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQVMKIL 64

Query: 104 NILEKNITVGGISQPNSLFELHNNSSPRVDPPLCQPIEDSLQHNSSHDTQ------QTPT 155
           N+L+  +TVGG SQPN+L E +NNSSPRVDPPLCQ  E   QH+SSHD Q      Q PT
Sbjct: 65  NVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQQVPT 124

[Close]
BLAST of MC11g_new0405 vs. NCBI nr
Match: XP_022143515.1 (uncharacterized protein LOC111013388 [Momordica charantia])

HSP 1 Score: 110 bits (274), Expect = 3.02e-27
Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 0 

Query: 32  IHHSLYTRYIKQ------NAELNKIRDEIHEQVMEELNAELKKMRDKVQEHVTEMQN--- 91
           +HHS    YIKQ      NAEL KIRDEIHE+V+EELN ELK++RD++QEHV E+ N   
Sbjct: 33  LHHS-GDWYIKQYNMEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVHNVEL 92

Query: 92  -KMRQEINKIQEQIKKICNILEKNITVGGISQPNSLFELHNNSSPRVDPPL-----CQPI 145
            KMRQ+I+KIQ Q+  I N+L+K +TVG ISQPN+L E HNNSS RV P L     C  +
Sbjct: 93  KKMRQDIDKIQGQVTGILNVLKKIVTVGDISQPNNLVEPHNNSSLRVGPSLFRKRKCTEM 152

[Close]
BLAST of MC11g_new0405 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 9.02e-36
Identity = 74/122 (60.66%), Postives = 90/122 (73.77%), Query Frame = 0 

Query: 44  NAELNKIRDEIHEQVMEELNAELKKMRDKVQEHVTEMQN----KMRQEINKIQEQIKKIC 103
           NAEL  I DEIHE+V+EELN ELKK+RD++QE V E+QN    KMRQ+I+ IQ+Q+ KI 
Sbjct: 5   NAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQVMKIL 64

Query: 104 NILEKNITVGGISQPNSLFELHNNSSPRVDPPLCQPIEDSLQHNSSHDTQ------QTPT 155
           N+L+  +TVGG SQPN+L E +NNSSPRVDPPLCQ  E   QH+SSHD Q      Q PT
Sbjct: 65  NVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQQVPT 124

[Close]
BLAST of MC11g_new0405 vs. ExPASy TrEMBL
Match: A0A6J1CP05 (uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013388 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 1.46e-27
Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 0 

Query: 32  IHHSLYTRYIKQ------NAELNKIRDEIHEQVMEELNAELKKMRDKVQEHVTEMQN--- 91
           +HHS    YIKQ      NAEL KIRDEIHE+V+EELN ELK++RD++QEHV E+ N   
Sbjct: 33  LHHS-GDWYIKQYNMEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVHNVEL 92

Query: 92  -KMRQEINKIQEQIKKICNILEKNITVGGISQPNSLFELHNNSSPRVDPPL-----CQPI 145
            KMRQ+I+KIQ Q+  I N+L+K +TVG ISQPN+L E HNNSS RV P L     C  +
Sbjct: 93  KKMRQDIDKIQGQVTGILNVLKKIVTVGDISQPNNLVEPHNNSSLRVGPSLFRKRKCTEM 152

The following BLAST results are available for this feature:
BLAST of MC11g_new0405 vs.
Match NameE-valueIdentityDescription
BLAST of MC11g_new0405 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153553.11.86e-3560.66uncharacterized protein LOC111021029 [Momordica charantia][more]
XP_022143515.13.02e-2755.04uncharacterized protein LOC111013388 [Momordica charantia][more]
BLAST of MC11g_new0405 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DHS79.02e-3660.66uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1CP051.46e-2755.04uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
BLAST of MC11g_new0405 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..155
NoneNo IPR availableSUPERFAMILY58113Apolipoprotein A-Icoord: 45..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g_new0405.1MC11g_new0405.1mRNA